Gene

KWMTBOMO00927  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA009794

Annotation

PREDICTED:_aspartate--tRNA_ligase?_cytoplasmic_[Papilio_xuthus]

Location

Bomo_Chr2(+):6456657-6473081      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 2.047

CDS

ATGGTTAAATCGGAAGATCCATCTATAGTTGTTGGGGATGCGGCGGCCAGTAAGAAGGCAGCCAAAAAAGCTGCCAAAACCGCTGAGAAACAACAAAAGAAAGCCGAGCATAAGGCTTCATCAGCTCAGCCATCAACGGAATCAGAGCCTGACTTCTCAGAAGGACTTTATGGGAATATGAAAATGATCCAATCGTCAGGTGAACATCGTGACAGGGTTTACACTGATGTTGAAAATTTGAGTATCAAAATGGACGGTCAAACTGTTTGGGTTAGAGCTCGTCTACAAACTTCTCGAGCTAAAGGCAAGCAGTGCTTCGCTGTGCTGAGGCAGACCTCGAGCACAGTTCAGCTGCTGGTTAGCGTTAACGAGCAACGGAAGATCAGCAAACAGATGGTCAAATTCACCGGCAACATCACGAGAGAGTCGATAGTCGACGTGGAGGCTTCGGTCGTGAGGACGGCCGCCCCAGTCGAATCGTGCACAATTAAGGACGTGGAACTGGTGGCTCATCAGATATGGACGGTATCGAGCGCCAGATCCCAGCTTCCTCTGCAGATCGAGGACGCGGCCAGACCGGAGAAGAGTGATGAGCCGGAAGCCTTGAAGATCCGCGTGAACCAGGACACCCGGCTCGACAATCGGGTTTTGGATCTGCGCACGCCGGCTAACCAGGCCGTCTTCAGGATCGAGGCCGGGGTCTGCAGGCTCTTCAGGGATATCCTCACGAAGAAAGGCTTCGTCGAGATCCACACGCCGAAGATTATATCTGCCGCGTCCGAGGGCGGCGCTAACGTGTTCACCGTCTCCTACTTCAAGTCCTCGGCGTATCTCGCGCAGAGCCCTCAGCTATACAAGCAGATGGCGATCGCGGCGGACTTCGACAAGGTGTTCACGGTTGGGGCTGTGTTCAGAGCCGAAGACTCGAACACCCACCGTCACCTCACCGAGTTTGTGGGGCTCGACCTAGAGATGTCCTTCAAGCAGCACTACCACGAGGTCCTGGACACCATAGGGGGCACATTCACGGAGATGTTCCGGGGGCTAAGGGACCAGTTTGCCTCCGAGATAGCGACTGTGGGTCAACAGTACCGGGTGGAACCCTTCAAATTCTTGGATCCTCCCCTGAAGCTGGAGTTTCCGCAGGCCGTCCAGATGCTGAAGGAAGCTGGAGTGTCTGTTGGAGACGAGGACGACCTGTCCACTCCGGACGAGAAGCTCCTGGGCAGGCTGGTGCGGGCCAAGTACGACACGGACTTCTATATCCTGGACAAATATCCTCTCGCCGTCCGACCCTTCTACACCATGCCGGATCCCGGGAACCCTAAATATTCGAATTCGTACGACATGTTCATGCGCGGAGAGGAGATACTTAGCGGCGCCCAGCGGATCCACGACCCGGACCTCCTCGCCGAGCGCGCGCGCCTCCACGGCGTCGACACGAGCAAGATAGCGGCGTACATCGAGTCGTTCCGGCTGGGCTGCCCCCCGCACGCAGGAATCCATAAGGCTCTCTGTGTGATCTCTCTCTCCTCTGTGACGTCAGGTGGCGGGATAGGTCTGGAGCGCGTCGTGATGCTGTATCTGGGTCTGGACAACATCAGAAAGACCTCAATGTTCCCGAGAGACCCGAAACGCGTCACGCCGTAA

Protein

MVKSEDPSIVVGDAAASKKAAKKAAKTAEKQQKKAEHKASSAQPSTESEPDFSEGLYGNMKMIQSSGEHRDRVYTDVENLSIKMDGQTVWVRARLQTSRAKGKQCFAVLRQTSSTVQLLVSVNEQRKISKQMVKFTGNITRESIVDVEASVVRTAAPVESCTIKDVELVAHQIWTVSSARSQLPLQIEDAARPEKSDEPEALKIRVNQDTRLDNRVLDLRTPANQAVFRIEAGVCRLFRDILTKKGFVEIHTPKIISAASEGGANVFTVSYFKSSAYLAQSPQLYKQMAIAADFDKVFTVGAVFRAEDSNTHRHLTEFVGLDLEMSFKQHYHEVLDTIGGTFTEMFRGLRDQFASEIATVGQQYRVEPFKFLDPPLKLEFPQAVQMLKEAGVSVGDEDDLSTPDEKLLGRLVRAKYDTDFYILDKYPLAVRPFYTMPDPGNPKYSNSYDMFMRGEEILSGAQRIHDPDLLAERARLHGVDTSKIAAYIESFRLGCPPHAGIHKALCVISLSSVTSGGGIGLERVVMLYLGLDNIRKTSMFPRDPKRVTP

Cofactor

Mn(2+)

Similarity

Belongs to the glycosyltransferase 2 family. GalNAc-T subfamily.

Uniprot

A0A2A4J368   A0A2A4JE81   A0A194PZP3   B0X7J5   Q17H99   Q16PV1   + More
A0A1Q3F378   B0XJB1   A0A182Y144   A0A182RMI3   A0A336MEG7   A0A182MIZ2   A0A182WKG0   T1DE45   A0A182JPY7   A0A182V6W6   A0A182TU77   A0A182X511   A0A182PHG6   A0A182NHR2   A0A182HLV7   Q7PNQ9   U5EXR9   A0A182LJC5   A0A084WKN7   A0A182Q122   A0A182S7S8   A0A1Q3F2Z1   W5J8U8   A0A2M4A3L9   A0A2M4BJU8   A0A0C9QI47   A0A182FEI4   A0A0C9RLY9   A0A182JBL6   A0A2M4BJJ6   A0A1L8DRH9   A0A1L8DRM5   A0A232ENR4   T1DPZ8   A0A1L8EE42   A0A154P1N9   K7J6A8   A0A1I8N0C3   T1PCU1   A0A1J1HJL7   A0A2P8XDH4   B4MJQ9   A0A0L7RC54   A0A195AZP3   A0A0K8VJM4   A0A151K020   F4W4B8   A0A0L0C7N3   A0A1I8NRK8   A0A034W273   A0A0A1WNI3   B4P4X4   A0A158NMJ0   B4HPX8   A0A1W4VQ18   Q7K0E6   B4QDI5   A0A195CW33   Q9XYM1   A0A1A9X3S2   A0A0M9A8R0   B4KRH1   A0A067R146   B4LQ62   A0A310SDA8   A0A1B6H532   B3NRT9   A0A1B6GII5   A0A151WJ78   A0A1B6JV67   A0A2J7Q1S0   A0A0M4E520   B3MDB5   A0A088AMB2   A0A1B6C9A9   A0A0R3NQ24   Q28XU5   B4J8Y1   A0A1B0A9G5   D6WHW1   A0A3B0JQH5   A0A1A9USQ6   E9ICF4   D3TLE4   A0A1A9XN79   S4PTA7   A0A1B0BE57   H9JJU3   A0A1Y1L876   A0A023F5B1   A0A1D2N1U5   A0A069DUZ9   A0A2S2QF06   A0A1Q3F368  

Pubmed

26354079    17510324    25244985    24330624    12364791    14747013    + More
17210077    20966253    24438588    20920257    23761445    28648823    20075255    25315136    29403074    17994087    21719571    26108605    25348373    25830018    17550304    21347285    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    22936249    10071220    24845553    15632085    18362917    19820115    21282665    20353571    23622113    19121390    28004739    25474469    27289101    26334808   

EMBL

NWSH01003763    PCG65843.1    NWSH01001899    PCG69750.1    KQ459593    KPI96635.1    + More
DS232452    EDS42007.1    CH477251    EAT46044.1    CH477771    EAT36397.1    GFDL01013066    JAV21979.1    DS233473    EDS30148.1    UFQT01001036    SSX28576.1    AXCM01019571    GALA01001197    JAA93655.1    APCN01004264    AAAB01008960    EAA11760.4    GANO01000808    JAB59063.1    ATLV01024126    KE525349    KFB50781.1    AXCN02000375    GFDL01013125    JAV21920.1    ADMH02002097    ETN59224.1    GGFK01002095    MBW35416.1    GGFJ01004090    MBW53231.1    GBYB01014383    JAG84150.1    GBYB01014382    JAG84149.1    GGFJ01004089    MBW53230.1    GFDF01004996    JAV09088.1    GFDF01004995    JAV09089.1    NNAY01003104    OXU19971.1    GAMD01002889    JAA98701.1    GFDG01001885    JAV16914.1    KQ434796    KZC05753.1    KA646602    AFP61231.1    CVRI01000006    CRK88231.1    PYGN01002725    PSN30049.1    CH963846    EDW72348.1    KQ414615    KOC68572.1    KQ976697    KYM77512.1    GDHF01013594    JAI38720.1    KQ981360    KYN42448.1    GL887503    EGI70962.1    JRES01000780    KNC28388.1    GAKP01010510    JAC48442.1    GBXI01014222    JAD00070.1    CM000158    EDW90695.1    ADTU01020618    CH480816    EDW47641.1    AE013599    AY070532    AAF58445.1    AAL48003.1    AGB93463.1    AGB93464.1    CM000362    CM002911    EDX06850.1    KMY93367.1    KQ977231    KYN04747.1    AF113612    AAD21582.1    KQ435711    KOX79545.1    CH933808    EDW10397.1    KK853011    KDR12536.1    CH940648    EDW61347.1    KQ762882    OAD55314.1    GECU01037930    JAS69776.1    CH954179    EDV56241.1    GECZ01007534    JAS62235.1    KQ983044    KYQ47912.1    GECU01004637    JAT03070.1    NEVH01019380    PNF22530.1    CP012524    ALC41278.1    CH902619    EDV36363.1    GEDC01027236    JAS10062.1    CM000071    KRT02924.1    EAL26221.2    CH916367    EDW01330.1    KQ971321    EFA00049.1    OUUW01000001    SPP75596.1    GL762282    EFZ21742.1    EZ422246    ADD18522.1    GAIX01012368    JAA80192.1    JXJN01012807    BABH01017797    BABH01017798    BABH01017799    BABH01017800    GEZM01062263    JAV69909.1    GBBI01002419    JAC16293.1    LJIJ01000293    ODM99228.1    GBGD01001129    JAC87760.1    GGMS01007111    MBY76314.1    GFDL01013040    JAV22005.1   

Proteomes

UP000218220    UP000053268    UP000002320    UP000008820    UP000076408    UP000075900    + More
UP000075883    UP000075920    UP000075881    UP000075903    UP000075902    UP000076407    UP000075885    UP000075884    UP000075840    UP000007062    UP000075882    UP000030765    UP000075886    UP000075901    UP000000673    UP000069272    UP000075880    UP000215335    UP000076502    UP000002358    UP000095301    UP000183832    UP000245037    UP000007798    UP000053825    UP000078540    UP000078541    UP000007755    UP000037069    UP000095300    UP000002282    UP000005205    UP000001292    UP000192221    UP000000803    UP000000304    UP000078542    UP000091820    UP000053105    UP000009192    UP000027135    UP000008792    UP000008711    UP000075809    UP000235965    UP000092553    UP000007801    UP000005203    UP000001819    UP000001070    UP000092445    UP000007266    UP000268350    UP000078200    UP000092443    UP000092460    UP000005204    UP000094527   

PRIDE

Q7K0E6    Q9XYM1    H9JJU3   

Pfam

PF00152   tRNA-synt_2        + More
PF01336   tRNA_anti-codon
PF00652   Ricin_B_lectin
PF00535   Glycos_transf_2
PF04420   CHD5

Interpro

IPR012340   NA-bd_OB-fold        + More
IPR004364   aa-tRNA-synt_II       
IPR004523   Asp-tRNA_synthase_2       
IPR006195   aa-tRNA-synth_II       
IPR002312   Asp/Asn-tRNA-synth_IIb       
IPR004365   NA-bd_OB_tRNA       
IPR001173   Glyco_trans_2-like       
IPR029044   Nucleotide-diphossugar_trans       
IPR000772   Ricin_B_lectin       
IPR035992   Ricin_B-like_lectins       
IPR028945   WRB/Get1       

SUPFAM

SSF50249   SSF50249        + More
SSF50370   SSF50370       
SSF53448   SSF53448       

Gene 3D

3.90.550.10    

CDD

cd00161  RICIN

ProteinModelPortal

A0A2A4J368   A0A2A4JE81   A0A194PZP3   B0X7J5   Q17H99   Q16PV1   + More
A0A1Q3F378   B0XJB1   A0A182Y144   A0A182RMI3   A0A336MEG7   A0A182MIZ2   A0A182WKG0   T1DE45   A0A182JPY7   A0A182V6W6   A0A182TU77   A0A182X511   A0A182PHG6   A0A182NHR2   A0A182HLV7   Q7PNQ9   U5EXR9   A0A182LJC5   A0A084WKN7   A0A182Q122   A0A182S7S8   A0A1Q3F2Z1   W5J8U8   A0A2M4A3L9   A0A2M4BJU8   A0A0C9QI47   A0A182FEI4   A0A0C9RLY9   A0A182JBL6   A0A2M4BJJ6   A0A1L8DRH9   A0A1L8DRM5   A0A232ENR4   T1DPZ8   A0A1L8EE42   A0A154P1N9   K7J6A8   A0A1I8N0C3   T1PCU1   A0A1J1HJL7   A0A2P8XDH4   B4MJQ9   A0A0L7RC54   A0A195AZP3   A0A0K8VJM4   A0A151K020   F4W4B8   A0A0L0C7N3   A0A1I8NRK8   A0A034W273   A0A0A1WNI3   B4P4X4   A0A158NMJ0   B4HPX8   A0A1W4VQ18   Q7K0E6   B4QDI5   A0A195CW33   Q9XYM1   A0A1A9X3S2   A0A0M9A8R0   B4KRH1   A0A067R146   B4LQ62   A0A310SDA8   A0A1B6H532   B3NRT9   A0A1B6GII5   A0A151WJ78   A0A1B6JV67   A0A2J7Q1S0   A0A0M4E520   B3MDB5   A0A088AMB2   A0A1B6C9A9   A0A0R3NQ24   Q28XU5   B4J8Y1   A0A1B0A9G5   D6WHW1   A0A3B0JQH5   A0A1A9USQ6   E9ICF4   D3TLE4   A0A1A9XN79   S4PTA7   A0A1B0BE57   H9JJU3   A0A1Y1L876   A0A023F5B1   A0A1D2N1U5   A0A069DUZ9   A0A2S2QF06   A0A1Q3F368  

PDB

5Y6L     E-value=0,     Score=1638

KEGG

101739619    K22503 aspartyl-tRNA synthetase [EC:6.1.1.12] | (RefSeq) aspartate--tRNA ligase, cytoplasmic

PATHWAY

00970    Aminoacyl-tRNA biosynthesis - Bombyx mori (domestic silkworm)

GO

GO:0006422   GO:0005737   GO:0005524   GO:0004815   GO:0003676   GO:0003723   GO:0017101   GO:0005829   GO:0030246   GO:0016757   GO:0006486   GO:0005794   GO:0016021   GO:0071816   GO:0000166   GO:0004812   GO:0006418   GO:0004887   GO:0003707  

PANTHER

PTHR43450  

Length:

549

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.29673

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00104

outside

1  -  549

 

 

Pi

244.360036

Theta

177.019388

Tajima's D

1.289508

CLR

0.019731

CSRT

0.733413329333533

Interpretation

Uncertain