Gene

KWMTBOMO00916

Pre Gene Modal

BGIBMGA007320

Annotation

PREDICTED:_late_histone_H2B.L4-like_[Bombyx_mori]

Location

Bomo_Chr2(+):6330627-6331248      View in EpiBrowser

Full name

Histone H2B       + More
Histone H2B type 1-M      
Histone H2B type 1-D      

Alternative Name

H2B 291B
HIRA-interacting protein 2
Histone H2B.1 B
Histone H2B.b

Location in the cell

Mitochondrial   Reliability : 2.005 Nuclear   Reliability : 1.952

CDS

ATGGCGCCAACGAAAGTACCCAAGAAACCTTTGAAGTCTATGGAGAAGGTCGTGGACAAGCCGATATCGAAAACGAAAAAAATCAAAAAAAAAAAGAACTATCAAAGCTTCTCGATCTATCTTTACAAATTACTGAGGGCCGTCACGCAAGACAACCTGGGCATCTCGAGGAAGTCGATGTTGATCATGAATAACTTCGTTAACGATATGCTGGAGAAGATCGCCGTGGAAGCCGGAAGGCTGGTCGCCCACGGCAAGAAGAATACTCTGGGCAGCAGAGAAATCCAATCTGCCGTCAAGTTACTAGTACCGGGAGAGCTGGCCACACACGCCAACTCCGAGGGCATGAAGGCCATAAGCATGTACCATTTGAGCAAAAAGAAAGACTCCAAAAGCAACGACTCGGAATGA

Protein

MAPTKVPKKPLKSMEKVVDKPISKTKKIKKKKNYQSFSIYLYKLLRAVTQDNLGISRKSMLIMNNFVNDMLEKIAVEAGRLVAHGKKNTLGSREIQSAVKLLVPGELATHANSEGMKAISMYHLSKKKDSKSNDSE

Subunit

The nucleosome is a histone octamer containing two molecules each of H2A, H2B, H3 and H4 assembled in one H3-H4 heterotetramer and two H2A-H2B heterodimers.
The nucleosome is a histone octamer containing two molecules each of H2A, H2B, H3 and H4 assembled in one H3-H4 heterotetramer and two H2A-H2B heterodimers. The octamer wraps approximately 147 bp of DNA.

Miscellaneous

The mouse orthologous protein seems not to exist.

Similarity

Belongs to the histone H2B family.

Keywords

Acetylation   ADP-ribosylation   Chromosome   Complete proteome   DNA-binding   Glycoprotein   Hydroxylation   Isopeptide bond   Methylation   Nucleosome core   Nucleus   Phosphoprotein   Reference proteome   Ubl conjugation   Direct protein sequencing  

Feature

chain  Histone H2B type 1-M

Uniprot

H9JCS3   A0A212ERC6   A0A2H1V4H3   A0A2A4ITZ7   A0A0N0PDA2   A0A194PT82   + More
A0A194PZN3   A0A0N1IPT4   A0A1S3AG84   A0A2P4S5Y8   A0A1U7TD89   A0A091DS07   A0A250Y9H5   U3FTV6   K7DSF7   I2CXT1   A0A0R3W3H9   A0BQ72   I3MUG9   B2RTK3   A0A2K6B1R7   A0A2K6KH29   A0A384C8P4   L5JTM7   A0A2I2YZY0   A0A2I3H8R1   A0A341BZX3   L8IS67   F2Z584   A0A2K5XTB7   A0A0D9R6C1   G3U0S2   F7E1X9   A0A2U3V275   A0A2R8ZBV1   A0A340YEA0   A0A2K5C6W9   A0A096NAC1   A0A2K6NPE8   A0A2K5KMA9   H0WXH8   A0A2Y9MLF3   A0A1U7THA5   A0A2U3WDG7   A0A2K5HBW9   A0A1D5R0R7   S9X6I9   A0A2Y9RRC3   A0A2J8S4W3   A0A2Y9FSH5   A0A2U3XWX4   G7P2M4   Q2KII5   A0A2J8JQF4   A0A024QZZ7   P10854   P58876   I2CTI8   A0A2U3WW17   K7BEC2   Q5KR83   F7A4V1   A0A2K6G7Q4   A0A0P6J793   G7MR28   S4S0X6   A0CP18   A0A384DHN8   L7N0L5   A0A341BUQ9   L8IMB9   A0A287AWZ3   A0A2Y9RT50   A0A2U4BI75   A0A2Y9F8S4   M3X164   A0A2U3Y5P4   A0A2Y9IMT7   H0XN37   W5NTP1   A0A1S3AHH1   A0A2Y9MPL9   A0A1U7TTR0   A0A2U3WEU2   L9KXB8   M3Z4A9   A0A212D0W4   A0A2K6EHN2   A0A383Z520   A0A2F0B1D3   A0A340X941   A0A0Q3X516   A0D6B2  

Pubmed

19121390    22118469    26354079    28087693    25243066    25319552    + More
17086204    12040188    15489334    23806337    23258410    22398555    22751099    30723633    22722832    25362486    17431167    23149746    17194215    22002653    19393038    16136131    11181995    3562244    12408966    19468303    15197225    16039583    20647423    21925322    22389435    24681537    27105115    9710638    1916825    14574404    16627869    12757711    16307923    16283522    16713563    16457587    16319397    19608861    21726816    22814378    23824326    25755297    27105113    27723750    28112733    17408886    19892987    24813606    16341006    17975172    20809919    23385571   

EMBL

BABH01040891    AGBW02013077    OWR44004.1    ODYU01000629    SOQ35738.1    NWSH01007454    + More
PCG62966.1    KQ460280    KPJ16321.1    KQ459593    KPI96626.1    KPI96625.1    KPJ16322.1    PPHD01099645    POI19532.1    KN122054    KFO33882.1    GFFW01004506    JAV40282.1    GAMR01000959    GAMP01005005    JAB32973.1    JAB47750.1    GABE01003302    JAA41437.1    JV636426    AFJ71766.1    UYRS01018350    VDK33481.1    CT868008    CAK60689.1    AGTP01091238    BC139381    BC139382    CH466561    AAI39382.1    EDL32633.1    KB031119    ELK02690.1    CABD030043837    ADFV01016337    JH880788    ELR58903.1    AEMK02000051    DQIR01142780    DQIR01142783    DQIR01330507    HDA98256.1    AQIB01159582    AJFE02010591    AHZZ02024302    AAQR03059044    JSUE03030466    KB016868    EPY83104.1    ABGA01197356    NDHI03003609    PNJ15817.1    AQIA01052460    AB171147    CM001279    BAE88210.1    EHH52793.1    BC112625    AAI12626.1    AACZ04065844    NBAG03000433    PNI25006.1    CH471087    EAW55536.1    X05863    AY158928    AL589651    AJ223353    M60751    AF531287    AL353759    BC002842    JV527817    AFJ70273.1    GABC01000948    GABD01002110    JAA10390.1    JAA30990.1    AB195237    BAD84179.1    GEBF01005133    JAN98499.1    CM001256    EHH18022.1    CT868130    CAK72535.1    AAEX03009169    JH880956    ELR57685.1    AEMK02000010    AANG04001781    AAQR03184104    AMGL01090601    KB320619    ELW67358.1    AEYP01100781    MKHE01000009    OWK11873.1    NTJE010045785    MBV96796.1    LMAW01000414    KQL57786.1    CT868318    CAK78579.1   

Proteomes

UP000005204    UP000007151    UP000218220    UP000053240    UP000053268    UP000079721    + More
UP000189704    UP000028990    UP000046400    UP000282613    UP000000600    UP000005215    UP000233120    UP000233180    UP000261680    UP000010552    UP000001519    UP000001073    UP000252040    UP000008227    UP000233140    UP000029965    UP000007646    UP000245320    UP000240080    UP000265300    UP000233020    UP000028761    UP000233200    UP000233060    UP000005225    UP000248483    UP000245340    UP000233080    UP000006718    UP000248480    UP000001595    UP000248484    UP000245341    UP000009130    UP000233100    UP000009136    UP000002277    UP000000589    UP000005640    UP000002281    UP000233160    UP000245300    UP000291021    UP000002254    UP000011712    UP000248482    UP000002356    UP000011518    UP000000715    UP000261681    UP000051836   

PRIDE

H9JCS3    F2Z584    P10854    P58876   

Pfam

PF00125   Histone

Interpro

IPR000558   Histone_H2B        + More
IPR009072   Histone-fold       
IPR007125   Histone_H2A/H2B/H3       

SUPFAM

SSF47113   SSF47113       

Gene 3D

1.10.20.10    

ProteinModelPortal

H9JCS3   A0A212ERC6   A0A2H1V4H3   A0A2A4ITZ7   A0A0N0PDA2   A0A194PT82   + More
A0A194PZN3   A0A0N1IPT4   A0A1S3AG84   A0A2P4S5Y8   A0A1U7TD89   A0A091DS07   A0A250Y9H5   U3FTV6   K7DSF7   I2CXT1   A0A0R3W3H9   A0BQ72   I3MUG9   B2RTK3   A0A2K6B1R7   A0A2K6KH29   A0A384C8P4   L5JTM7   A0A2I2YZY0   A0A2I3H8R1   A0A341BZX3   L8IS67   F2Z584   A0A2K5XTB7   A0A0D9R6C1   G3U0S2   F7E1X9   A0A2U3V275   A0A2R8ZBV1   A0A340YEA0   A0A2K5C6W9   A0A096NAC1   A0A2K6NPE8   A0A2K5KMA9   H0WXH8   A0A2Y9MLF3   A0A1U7THA5   A0A2U3WDG7   A0A2K5HBW9   A0A1D5R0R7   S9X6I9   A0A2Y9RRC3   A0A2J8S4W3   A0A2Y9FSH5   A0A2U3XWX4   G7P2M4   Q2KII5   A0A2J8JQF4   A0A024QZZ7   P10854   P58876   I2CTI8   A0A2U3WW17   K7BEC2   Q5KR83   F7A4V1   A0A2K6G7Q4   A0A0P6J793   G7MR28   S4S0X6   A0CP18   A0A384DHN8   L7N0L5   A0A341BUQ9   L8IMB9   A0A287AWZ3   A0A2Y9RT50   A0A2U4BI75   A0A2Y9F8S4   M3X164   A0A2U3Y5P4   A0A2Y9IMT7   H0XN37   W5NTP1   A0A1S3AHH1   A0A2Y9MPL9   A0A1U7TTR0   A0A2U3WEU2   L9KXB8   M3Z4A9   A0A212D0W4   A0A2K6EHN2   A0A383Z520   A0A2F0B1D3   A0A340X941   A0A0Q3X516   A0D6B2  

PDB

4KHA     E-value=1.1761e-22,     Score=256

KEGG

101735384    K11252 histone H2B | (RefSeq) late histone H2B.L4-like

GO

GO:0003677   GO:0000786   GO:0005634   GO:0046982   GO:0005829   GO:0005654   GO:0006334   GO:0070062   GO:0016567   GO:0019001   GO:0031683   GO:0007165   GO:0000166   GO:0004887   GO:0003707   GO:0016021  

PANTHER

PTHR23428  

Subcellular location

Chromosome  
Nucleus  

Length:

136

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0783200000000001

Exp number, first 60 AAs:

0.07726

Total prob of N-in:

0.22151

outside

1  -  136

 

 

Pi

254.405545

Theta

183.272484

Tajima's D

1.235939

CLR

0.012941

CSRT

0.728363581820909

Interpretation

Uncertain