SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO00914
Pre Gene Modal
BGIBMGA009783
Annotation
PREDICTED:_zinc_finger_protein_62_homolog_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 4.572
 

Sequence

CDS
ATGGCCAACGAGCTGCAACCATTGATGCTGTGCACAGAGAACTCTGCAGGTGAAGAGGTTACATTTAGGATTGAACCTGAAGACGACTTCCAATCCTTTCTGGATAAAGCCAAAGCTGTCCTCGGCTACGACATAGATATAAACTCCATAACACAGAATCAACCCGTTTCGCTGCACGATAGTATATATCAATTCCTTGCGAATGCGGAATGTAATCCGACACGTCCGACATACGATCAGGGCTTGAATAGTGCCGGCCTAGAGTATATTCTCGATGACGGTACAGAAATCAGAGCATCACAGATACATTTCGACAATGAGGATTCTGTGTTAGATTTATCAGTTGAAGCTCTTCCGTTTGTTCGCTTTAAAGATGACGAGGAAGACCGCAATGATGCTGTTTTCGGGGATACCGTTAAATATAATATTGTTGGGAGTCCAACATTAAGGCTGGATCAGAGCGCCAACCTCAAAGACTTTGCCAATTCGTTACCGTTCAGATTGGTTCGTGACAGCACTTTGAATTTGGAATCGCATTACCAGATTTATTCAGATGTGACCGCTATGCGCAACTTTTCTGGAGCAATCCCCAGCGATAGTTATATGAATACCGATAATAGCTTTAAAAGAAACGACAGTTATCGGCAAAAGTCCGATAATTTCGCGTACCGTGATGAGATACTCGATATATTTAAGAATTCACCAGTAACTTCGTTGCCCTGCGAAGGTTACAGCGAAAGGAAACACGTGAGGAAAACGGATCCATCTCGGATCCACAAAAGGAAATCTGTATACGAATTCGACGGGGTTTTAATCAATGAGAATGCCAGAGAAATGTGCACAATATGCGCTCGTAAAGTAAACAAGGACAAAGCTTATTTATTTGATAACGAGGACCAGAAAAAGCACAGGTTTTCGCCGTGCAAGAAATCGGAGACCCAACTAAAAATAATCTGTGAGCTTTGTCTTAACGAATATTTTAAAACGTGCCGGATGAAAGGCGCCAACCAATTCTTGAATGCCGACGAATATTTGATCATCAAAAACAATCAACAGTACATTTATAAGAAGATTAAAGAGTTTCGTTTTCTGATCAACAAAAAAGAATGCAAAAAACAGAATAGTAATACAGCTATTGATGAGTACGTTAAAGTGGAAATCGGTTCTGATGGCGAGATAATAACGAAACCTCTAGAGGGGGGACCTGATGAGGTGGCGATGATGAAAGGCGGTGATGCCAGTGAGTCCTCGAGCGAAGTAGAGATTATTGAACAGAATGAACCCGAAACTGAGATAGATTCGATTATAGAGAACTTGGAGAATGCTGATGATGATGTTAAGGCGTTTTTGGGGAAATACCAGATTGACGATGGGGTATCGGAGCTTAAGTGCAGGTTTTGCGACACCGCATTTCCTGGTATACCCGGCGTGATTGAGCACGGAGATGCTCATAAGCACGAGATGGACAGTGAAATGGTTTACCCGTGTCCGCTCTGCGATTACGGTTACACTCATTTCAAATGGCTGAAAGGGCACATAATGGCGGCACACCAACGAAGACCAGAAACTGGCGTCAAAATTGAGAATACCAACGATTTAAACGGATCAGAGAAAACGGAAAATAAATCGCCAGAAAAAAGCGTTTGCGAAACCACAAACACTGCGCACCAAGCCATGCAGCTGAAGACGGAAGTGAAACAGGAGTGTCTGAACAGCAGCGACGATGAGATCTGGATCGTGCAGACCAACGACGCCGAAGCCACCAGCCCGGTCAGGAAGCTGATAGACGCTGTGCAGGTCGTCGAAAATCGAGATGGCGTAACGAAAAGGAAGCCAAAATGCTACAATTGCAGGTAG
Protein
MANELQPLMLCTENSAGEEVTFRIEPEDDFQSFLDKAKAVLGYDIDINSITQNQPVSLHDSIYQFLANAECNPTRPTYDQGLNSAGLEYILDDGTEIRASQIHFDNEDSVLDLSVEALPFVRFKDDEEDRNDAVFGDTVKYNIVGSPTLRLDQSANLKDFANSLPFRLVRDSTLNLESHYQIYSDVTAMRNFSGAIPSDSYMNTDNSFKRNDSYRQKSDNFAYRDEILDIFKNSPVTSLPCEGYSERKHVRKTDPSRIHKRKSVYEFDGVLINENAREMCTICARKVNKDKAYLFDNEDQKKHRFSPCKKSETQLKIICELCLNEYFKTCRMKGANQFLNADEYLIIKNNQQYIYKKIKEFRFLINKKECKKQNSNTAIDEYVKVEIGSDGEIITKPLEGGPDEVAMMKGGDASESSSEVEIIEQNEPETEIDSIIENLENADDDVKAFLGKYQIDDGVSELKCRFCDTAFPGIPGVIEHGDAHKHEMDSEMVYPCPLCDYGYTHFKWLKGHIMAAHQRRPETGVKIENTNDLNGSEKTENKSPEKSVCETTNTAHQAMQLKTEVKQECLNSSDDEIWIVQTNDAEATSPVRKLIDAVQVVENRDGVTKRKPKCYNCR

Summary

Pfam
PF00096   zf-C2H2        + More
PF00503   G-alpha
Interpro
IPR013087   Znf_C2H2_type        + More
IPR036236   Znf_C2H2_sf       
IPR011025   GproteinA_insert       
IPR027417   P-loop_NTPase       
IPR001019   Gprotein_alpha_su       
SUPFAM
SSF57667   SSF57667        + More
SSF52540   SSF52540       
SSF47895   SSF47895       
Gene 3D
PDB
6DFB     E-value=0.0244242,     Score=90

Ontologies

Topology

Length:
618
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00018
outside
1  -  618
 
 

Population Genetic Test Statistics

Pi
249.156087
Theta
173.89753
Tajima's D
1.266229
CLR
0.021028
CSRT
0.733863306834658
Interpretation
Uncertain
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