Gene

KWMTBOMO00910

Pre Gene Modal

BGIBMGA009781

Annotation

Myosin-Vb_[Papilio_machaon]

Location

Bomo_Chr2(+):6197007-6236556      View in EpiBrowser

Full name

Sodium/nucleoside cotransporter      

Location in the cell

PlasmaMembrane   Reliability : 4.964

CDS

ATGGACGCCGCTTACCTTCCGCCTGACAAGTCTCAATCCCAAAATGGAGACGTCGAAATGACAGACGTGAAACCGAAAAATGAACAAATCGTCCTCGATCAGTTGGAGTATGAGCCGTCTGGTTGCTTGGAGACCTCGCTAGCCAGGGTTGGCAGTTCCACTGAGGTGTTCCTCAAAAGAAATGGACCATCTATTAAGATCATAAGCCTTTTCGTGCTGAACGGCTTGGTGATCGGGTTCTTCTTCGGATGCTTATATTATCATTTGTATCATAATAACCAACCGTTGATGCTGTGCGAAGGCTTCGGAAGCTTGATAGCCTTGCTGTCGATAGTCTACTTCTTCGTCATATATTACTTGGTGGTCAAGAGGTACTTCGGGGACTGGTTCGAAGCTAACGTCTGGAATAAAGCCGAACGTGTGGCTTTAAAGCTCTGGGAATATGCTTTGTTTCGCTGGTCGTTCTGCTTGCTCGTGCTCGGTGGGATCCTGGTCTTCTTGGTCTTAGACGCGACAGACACACCCGAACGGCTTATATCCTTGCTCGGACTGTTTTTACTCATGGGATTAGGGTTTATATTCTCTTCGCATCCCGGCCGAGTGAAATGGCGCACCGTCTTATCCGGGCTCCTGTTGCAGTTCGTGTTTGGGCTGATCTTCATTAGGTGGGACCATGGAAGGATTGCTCTCCACTGCATTTCCGATAAGGTGGCGACATTCCTGCTATACGGCCAGGAAGGTGCCGCCTTCGCGTTTGGCAATCTGCTGGTCAGAGAAGAAGGAGTGTTTGCTTTTAGCTCTCTGCCAGTGATCTTCTTCTTCAGCATGTTAGTGGAGATATTGTTCTTTTGGGGCGCCCTGCAGGCGTTCTGTCTGACCCTGGGGAGGGTGTTGCGAGCCGCCACCAGCACCACGGTGGTCGAGAGTGTTATCGCCATTGGAAATGTCTTTCTTGGAATGACTGAATCAGTCCTGTTGGTGAAGCCGTATCTAGCTTTGCTGACGCCTTCGGAGATGCACGTCGTGATGGCTTCGGGTTTCGCCACCGTATCGGGTACGATCTTGGCGACGTATATTAATTTCGGGGCCAAAGCGACGCATCTCGTCACGGCTAGCGTGATGTCCGCCCCGGCCGCGGTGTGCTACGCGAAGCTGTTGATGCCGGAGACAAAAAGATCGCTCACGACCGTCGATAATATACAGCCGGTCGTCAGCGAAGATCAATCTGTTTTGTCGGCTGCGACCCGCGGCGCCACGAATGGGATCGCACTGATTCTGAACATAATAGCCAATATTGTGGCGTTTGTCGCGTTTGTGGCCTTCATAAATGGTGTGTTCGGGTATTGCGGCGGTCTACTGGGCTTTCCGGAGCTCAACCTGGAGTGGATCATGGGCAAAGTCTTCATTCCGCTCTGCTACGTCATGGGTGTACCTTGGGAGGAGTGCGAGCTGGTCGGGTCGTTAATCGGCCTGAAGACCATCGTGAATGAGTTCGTTGCGTATCAGAGGATGGGGGAGATGCTGAAGGATGGTCTCCTATCGCCTCGAGCTGAGCTGATAGCGACGTATGCTCTATGCGGCTTCACCAACCCAGGGTCAGCGGGGATCATGATCGGAGCTATAGCAGCAATGGCGCCAAATCAACGGGAGACATTGTCCAGTATCGCGTTGAGGGCTTTCTTCGCTGGCTGCGGGATATGCTTCATGACCGCTTGTATAGCTGCGCTACTCATGCCGGACGGAGCATTTATTTGA

Protein

MDAAYLPPDKSQSQNGDVEMTDVKPKNEQIVLDQLEYEPSGCLETSLARVGSSTEVFLKRNGPSIKIISLFVLNGLVIGFFFGCLYYHLYHNNQPLMLCEGFGSLIALLSIVYFFVIYYLVVKRYFGDWFEANVWNKAERVALKLWEYALFRWSFCLLVLGGILVFLVLDATDTPERLISLLGLFLLMGLGFIFSSHPGRVKWRTVLSGLLLQFVFGLIFIRWDHGRIALHCISDKVATFLLYGQEGAAFAFGNLLVREEGVFAFSSLPVIFFFSMLVEILFFWGALQAFCLTLGRVLRAATSTTVVESVIAIGNVFLGMTESVLLVKPYLALLTPSEMHVVMASGFATVSGTILATYINFGAKATHLVTASVMSAPAAVCYAKLLMPETKRSLTTVDNIQPVVSEDQSVLSAATRGATNGIALILNIIANIVAFVAFVAFINGVFGYCGGLLGFPELNLEWIMGKVFIPLCYVMGVPWEECELVGSLIGLKTIVNEFVAYQRMGEMLKDGLLSPRAELIATYALCGFTNPGSAGIMIGAIAAMAPNQRETLSSIALRAFFAGCGICFMTACIAALLMPDGAFI

Similarity

Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family.

Uniprot

H9JJT0   A0A0N1PIP6   A0A2A4JCV9   A0A194PZM9   A0A2H1V8E8   A0A2A4J2X3   + More
A0A2H1VEF3   A0A0C9R7V7   A0A2J7QUX5   A0A154P1H2   B0WVA2   A0A1S4G7K8   A0A0C9RUF3   A0A026X0B0   A0A0C9QDE9   A0A182GPF5   A0A023ESL5   Q17C78   A0A182H8G7   E2C0T8   A0A084W0V7   A0A067QR39   Q7Q682   A0A1S4GRI6   A0A2C9GRP7   A0A182U820   A0A182KPI6   W5JFX0   A0A151I0B3   A0A182FEE6   A0A195EXE3   A0A310SHZ5   A0A0L7RCS0   A0A158NST6   A0A088AMA0   E9IQ02   A0A182S4J4   A0A182NIJ4   A0A182WKL5   E2A818   A0A084W0V6   A0A1Y1MTQ5   A0A182JIM2   A0A1L8DEH6   A0A1L8DEC2   A0A1L8DEJ9   A0A182S784   A0A182P5K3   A0A182X750   A0A182MDH2   A0A2C9GRY3   A0A182VKV2   A0A182YCY9   A0A182KPI5   Q5TR91   A0A0P5B537   A0A0P5BEM5   A0A067R0S4   A0A0P5YY67   A0A0P5QM79   A0A1B6M760   B4J5F4   A0A182S9M3   A0A0P5PTQ6   A0A0P6IJA9   E9FYL5   B4N641  

Pubmed

19121390    26354079    24508170    30249741    26483478    24945155    + More
17510324    20798317    24438588    24845553    12364791    20966253    20920257    23761445    21347285    21282665    28004739    25244985    17994087    21292972   

EMBL

BABH01017769    BABH01017770    KQ460280    KPJ16326.1    NWSH01001970    PCG69528.1    + More
KQ459593    KPI96620.1    ODYU01001212    SOQ37118.1    NWSH01003827    PCG65790.1    ODYU01002096    SOQ39171.1    GBYB01012464    JAG82231.1    NEVH01010480    PNF32375.1    KQ434796    KZC05789.1    DS232121    EDS35445.1    GBYB01012460    JAG82227.1    KK107054    QOIP01000004    EZA61523.1    RLU23349.1    GBYB01012463    JAG82230.1    JXUM01015209    JXUM01015210    KQ560424    KXJ82481.1    GAPW01001323    JAC12275.1    CH477311    EAT43913.1    JXUM01118348    KQ566175    KXJ70346.1    GL451846    EFN78482.1    ATLV01019160    KE525263    KFB43851.1    KK853123    KDR11084.1    AAAB01008960    EAA10846.4    APCN01000092    ADMH02001340    ETN62956.1    KQ976619    KYM79095.1    KQ981923    KYN32950.1    KQ762882    OAD55339.1    KQ414615    KOC68551.1    ADTU01025155    GL764659    EFZ17322.1    GL437468    EFN70413.1    KFB43850.1    GEZM01024209    JAV87870.1    GFDF01009350    JAV04734.1    GFDF01009349    JAV04735.1    GFDF01009191    JAV04893.1    AXCM01002735    EAL39973.3    GDIP01189869    JAJ33533.1    GDIP01189870    JAJ33532.1    KDR11085.1    GDIP01051544    JAM52171.1    GDIQ01230434    GDIQ01122193    JAK21291.1    JAL29533.1    GEBQ01008244    JAT31733.1    CH916367    EDW01796.1    GDIQ01130437    JAL21289.1    GDIQ01020973    JAN73764.1    GL732527    EFX87550.1    CH964154    EDW79830.1   

Proteomes

UP000005204    UP000053240    UP000218220    UP000053268    UP000235965    UP000076502    + More
UP000002320    UP000053097    UP000279307    UP000069940    UP000249989    UP000008820    UP000008237    UP000030765    UP000027135    UP000007062    UP000075840    UP000075902    UP000075882    UP000000673    UP000078540    UP000069272    UP000078541    UP000053825    UP000005205    UP000005203    UP000075900    UP000075884    UP000075920    UP000000311    UP000075880    UP000075901    UP000075885    UP000075883    UP000075903    UP000076408    UP000001070    UP000000305    UP000007798   

PRIDE

H9JJT0   

Pfam

PF07662   Nucleos_tra2_C        + More
PF01773   Nucleos_tra2_N
PF00063   Myosin_head
PF01843   DIL
PF07670   Gate

Interpro

IPR011657   CNT_C_dom        + More
IPR008276   C_nuclsd_transpt       
IPR002668   CNT_N_dom       
IPR002710   Dilute_dom       
IPR027417   P-loop_NTPase       
IPR001609   Myosin_head_motor_dom       
IPR036961   Kinesin_motor_dom_sf       
IPR013087   Znf_C2H2_type       
IPR018270   C_nuclsd_transpt_met_bac       
IPR011642   Gate_dom       

SUPFAM

SSF52540   SSF52540       

Gene 3D

3.40.850.10    

ProteinModelPortal

H9JJT0   A0A0N1PIP6   A0A2A4JCV9   A0A194PZM9   A0A2H1V8E8   A0A2A4J2X3   + More
A0A2H1VEF3   A0A0C9R7V7   A0A2J7QUX5   A0A154P1H2   B0WVA2   A0A1S4G7K8   A0A0C9RUF3   A0A026X0B0   A0A0C9QDE9   A0A182GPF5   A0A023ESL5   Q17C78   A0A182H8G7   E2C0T8   A0A084W0V7   A0A067QR39   Q7Q682   A0A1S4GRI6   A0A2C9GRP7   A0A182U820   A0A182KPI6   W5JFX0   A0A151I0B3   A0A182FEE6   A0A195EXE3   A0A310SHZ5   A0A0L7RCS0   A0A158NST6   A0A088AMA0   E9IQ02   A0A182S4J4   A0A182NIJ4   A0A182WKL5   E2A818   A0A084W0V6   A0A1Y1MTQ5   A0A182JIM2   A0A1L8DEH6   A0A1L8DEC2   A0A1L8DEJ9   A0A182S784   A0A182P5K3   A0A182X750   A0A182MDH2   A0A2C9GRY3   A0A182VKV2   A0A182YCY9   A0A182KPI5   Q5TR91   A0A0P5B537   A0A0P5BEM5   A0A067R0S4   A0A0P5YY67   A0A0P5QM79   A0A1B6M760   B4J5F4   A0A182S9M3   A0A0P5PTQ6   A0A0P6IJA9   E9FYL5   B4N641  

PDB

5L26     E-value=1.28428e-50,     Score=506

KEGG

101738281    K11536 pyrimidine nucleoside transport protein | (RefSeq) solute carrier family 28 member 3-like

GO

GO:0016021   GO:0005337   GO:0016459   GO:0005524   GO:0003774   GO:0003779   GO:0003676   GO:0005415   GO:0005887   GO:1901642  

PANTHER

PTHR10590  

Length:

584

Number of predicted TMHs:

11

Exp number of AAs in TMHs:

251.28503

Exp number, first 60 AAs:

0.00021

Total prob of N-in:

0.90126

inside

1  -  67

TMhelix

68  -  90

outside

91  -  99

TMhelix

100  -  122

inside

123  -  149

TMhelix

150  -  172

outside

173  -  176

TMhelix

177  -  199

inside

200  -  205

TMhelix

206  -  223

outside

224  -  261

TMhelix

262  -  284

inside

285  -  296

TMhelix

297  -  319

outside

320  -  338

TMhelix

339  -  361

inside

362  -  423

TMhelix

424  -  446

outside

447  -  519

TMhelix

520  -  542

inside

543  -  554

TMhelix

555  -  577

outside

578  -  584

 

 

Pi

199.639889

Theta

154.561724

Tajima's D

0.868914

CLR

0.204073

CSRT

0.623918804059797

Interpretation

Uncertain