Silkworm Genome Informatics Database

Gene

KWMTBOMO00899

Pre Gene Modal

BGIBMGA009777

Annotation

PREDICTED:_putative_leucine-rich_repeat-containing_protein_DDB_G0290503_[Amyelois_transitella]

Location

Bomo_Chr2(+):5979335-5981471 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.789

CDS

ATGACAGGTGAAAATAACGAATTACGCAAATGTGTTTACACAAAGGATCAAGAAATAAAAGAACTTAACAAAACCATAAAAGATTTGAATCAAAGAATCCGGGATCTCATATCCGGTAGCGGTCCTGCAATTTCTTCGAAATCAGCCGGAGTCATAAGTGCCAAAATAACGGACTTATGCAAACAGAACAGACATTTAGTTGCAGAGTTAGAAGGATATAAAACAAAAAATGCAGCCTTGGAACGTAAAATCATGCAACTGGACATTTTAAACAAAGAAAACGAAAAATTAGAGGCATGTCTGTGCAAAGAAGATTTTCAAGACGGTAGTTCTGATGAACTGAAAGAATTGAACACTAAATTAGCGGCAGTCAACAAAAAACTATATGACAGTAAAAACAGAAATCTAGAATTGAAGAATGACATATTAGTTGCAACGAAAATCTTGCAACAGGAGCTGGGTGATAAGTTTACTAGCATAAAAGAACTGCAGAATGACCTGGCTGGATGGAAAGGGAGGGCCCAGCAAATATTACTTCTGCAGAGTAGAGTAAATGAGCTAGAGGAGAAATTGAACGGGAAGCAAAAGGATATGATTGAGGTTAAAAGAAAAGACCAGAGTCAGATAATAAGAGAATTAGAAATGAAGAGAAAAAAGGACGTAGATTTAGCAATGAAAGAGCTAGAAGTTCTAAAAGAGGAGAACCAAGATTTGAAGAGGAAATTGGACGGATCTCGTTGCAGAATTAGAAATTTAGAATGTGACGTTACCACTATTAGGCAGAAGATGCAAACGTTTGTGGAAAAGAGCAAGCATGATGATATGTTGATAAATGAACAAAGGAATCAGTTAAAAAATTCCGAACTCTATTATCAAGAGATATTAAAAGAGAACTCTTCGAAAATGAACAAAATGAATACTGAAATTAGTGAATATCAGAAACAGATAAAAAATACTGATGCTAAAATTCATGCATTGCGTAAACAAGCGAACGAAAAAGCAGCAAAAATAGAAGAATTGCGAGCCCAATTATTGAGATATGAAGAATGTTCACTACAAAGTGTGTTTTTCACTCCGATGAAAACCGCTACTGATAACGAAATAAAAAAACTAAGCGAGTTAATCATAACACTAAATACGAGAATAGACAACGAAAGACACAAATGGGAAGAACAAGAATCGGCAAACAGAAAACTTAAAGAAAAGAAGAAACGCCTAGAAAGAAAGATTAATAATTTAGAAGAAGAGCTTAAGACCTACAAAGAAACCAGGAGAACTTCAAGGCTTTCAAGGACATCCATGCAAAAGGAGACAACTTTTGACGCTTTAGGTACCAATACTGTGACCAAAAAACAGTCTTCGATTACAGCTGTTGAAAAACCAAGCGAGACTTCTTCTGAATCTCAACCAGCTGCAGACTATGAAACTTTAGATAAAGAAGAATTGAAATTCAAACTTGAATTAGCTGAAGAAAAATTAAAAATTATGGAGGACAAATTAAGGATGATTGAAGAAGAAAAACAAGATGACTTCAAAAATTTAACGGAAATGATACAAACATCAAAACAGTTGTTCAATGAAGCACTAGCGGTGTTGCAACGAGAGAAGTGTAACTGTTCCTGA

Protein

MTGENNELRKCVYTKDQEIKELNKTIKDLNQRIRDLISGSGPAISSKSAGVISAKITDLCKQNRHLVAELEGYKTKNAALERKIMQLDILNKENEKLEACLCKEDFQDGSSDELKELNTKLAAVNKKLYDSKNRNLELKNDILVATKILQQELGDKFTSIKELQNDLAGWKGRAQQILLLQSRVNELEEKLNGKQKDMIEVKRKDQSQIIRELEMKRKKDVDLAMKELEVLKEENQDLKRKLDGSRCRIRNLECDVTTIRQKMQTFVEKSKHDDMLINEQRNQLKNSELYYQEILKENSSKMNKMNTEISEYQKQIKNTDAKIHALRKQANEKAAKIEELRAQLLRYEECSLQSVFFTPMKTATDNEIKKLSELIITLNTRIDNERHKWEEQESANRKLKEKKKRLERKINNLEEELKTYKETRRTSRLSRTSMQKETTFDALGTNTVTKKQSSITAVEKPSETSSESQPAADYETLDKEELKFKLELAEEKLKIMEDKLRMIEEEKQDDFKNLTEMIQTSKQLFNEALAVLQREKCNCS

Uniprot

H9JJS6 A0A212F7H8 A0A2H1V2P5 A0A194PZL9 A0A0L7LPI2 A0A194R1A6 + More
W5P0Y5 F6VVS2 A0A0L7RBX8 A0A2Y9L136 A0A2U9BIP8 A0A151PDN1 A0A151PDH3 A0A3Q0GWQ3 A0A3P8Z6P8 A0A2A3E809 A0A3L7HMX9 F6ZK30

Pubmed

19121390 22118469 26354079 26227816 20809919 17495919 + More
22293439 25069045 29704459 18464734

EMBL

BABH01017742 AGBW02009870 OWR49686.1 ODYU01000398 SOQ35117.1 KQ459593 + More
KPI96610.1 JTDY01000414 KOB77299.1 KQ460890 KPJ11030.1 AMGL01044403 KQ414617 KOC68310.1 CP026249 AWP03928.1 AKHW03000487 KYO47049.1 KYO47048.1 KZ288338 PBC27830.1 RAZU01000168 RLQ67314.1

Proteomes

UP000005204 UP000007151 UP000053268 UP000037510 UP000053240 UP000002356 + More
UP000002280 UP000053825 UP000248482 UP000246464 UP000050525 UP000189705 UP000265140 UP000242457 UP000273346 UP000002279

PRIDE

H9JJS6

Pfam

PF00880 Nebulin + More
PF14604 SH3_9

Interpro

IPR038929   CCDC13        + More
IPR036028   SH3-like_dom_sf
IPR001452   SH3_domain
IPR000900   Nebulin_repeat

SUPFAM

SSF50044 SSF50044

ProteinModelPortal

H9JJS6 A0A212F7H8 A0A2H1V2P5 A0A194PZL9 A0A0L7LPI2 A0A194R1A6 + More
W5P0Y5 F6VVS2 A0A0L7RBX8 A0A2Y9L136 A0A2U9BIP8 A0A151PDN1 A0A151PDH3 A0A3Q0GWQ3 A0A3P8Z6P8 A0A2A3E809 A0A3L7HMX9 F6ZK30

KEGG

101735850 no KO assigned | (RefSeq) coiled-coil domain-containing protein 13-like

GO

GO:1905515 GO:0034451 GO:0031122

PANTHER

PTHR31935

Length:

540

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00258

Exp number, first 60 AAs:

0.00258

Total prob of N-in:

0.00348

outside

1 - 540

Pi

303.187449

Theta

213.979218

Tajima's D

1.319381

CLR

0

CSRT

0.747812609369532

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics