SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO00897  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA009776
Annotation
cuticular_protein_hypothetical_4_precursor_[Bombyx_mori]
Location in the cell
Extracellular   Reliability : 1.133
 

Sequence

CDS
ATGAGATTCCTGATCGCTTTTGTTGCCATCATCGGCTATGCTTCGGCTGGAGCCATCCTCTCCCATCTTGCGTACGGCGTGAACCCTGGTGACGCACAGGCCGCCGCCATTGACGCCACCGTCGCAGCCCAGGACACCGCCCGCGCCATCAACGAGGGACACGCCCGCGCCGCTGAAGCTGTCGTCCAACATAATACTGAAGCCGTCCGCCAGGCCGCCGAAGCCTCCCGCGAGATTCACGAAACCGCCTACTGGAACGGCGTCGCCGCTAACCAGAACGCTGTCGCCGCCGCCCAGTCCCACTCCGCCGCTATCAGCGGTGCCGCCGCCGCCGTGCGGGCTGCCCACCTCGCCTCTCCCTTGGTCACTGCCCCCTATGGCATCGCCGCACCTTACGGAATCGCCGCTCCCTACACCGCTTACGGCGCTTACGGCGTCGCCCCCTACGGCCTCGGCGTCCACGCTTGGTAA
Protein
MRFLIAFVAIIGYASAGAILSHLAYGVNPGDAQAAAIDATVAAQDTARAINEGHARAAEAVVQHNTEAVRQAAEASREIHETAYWNGVAANQNAVAAAQSHSAAISGAAAAVRAAHLASPLVTAPYGIAAPYGIAAPYTAYGAYGVAPYGLGVHAW

Summary

Ontologies

Topology

SignalP
Position:   1 - 16,         Likelihood:  0.967202
 
 
Length:
156
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
40.20378
Exp number, first 60 AAs:
22.05598
Total prob of N-in:
0.53164
POSSIBLE N-term signal
sequence
outside
1  -  3
TMhelix
4  -  26
inside
27  -  156
 
 

Population Genetic Test Statistics

Pi
263.330807
Theta
186.509047
Tajima's D
1.357555
CLR
0.167939
CSRT
0.751562421878906
Interpretation
Uncertain
Peptides ×
Source Sequence Identity Evalue
21761556 AAEAVVQHNTEAVR 100.00 5e-19
23174119 -.AAEAVVQHNTEAVR.- 100.00 0.012
23174119 -.ALAYIEAHPPSPSVVER.- 100.00 0.012
26822097 INRIPAAGSGDMIVATVK 100.00 0.012
26280517 YIFDFTK 100.00 0.012
25044914 AADWNIQEPQWTGR 100.00 0.012
24093152 AADSCDFAR 100.00 0.012
24402669 AAAVDVEPYWPGIFAK 100.00 0.012
27102218 QADVEVAVRDCIR 100.00 0.012
28467696 AAEASEVEQIK 100.00 0.012
21761556 VVGLQLEGVRQAIQVAQYEQSGHGSGGSGGYPGR 100.00 0.012
29197581 VAIQGEEMQIQQAK 100.00 0.012
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