SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO00882
Pre Gene Modal
BGIBMGA009772
Annotation
PREDICTED:_uncharacterized_protein_LOC106129493_isoform_X1_[Amyelois_transitella]
Location in the cell
Cytoplasmic   Reliability : 1.762 PlasmaMembrane   Reliability : 1.239
 

Sequence

CDS
ATGGAAGATACGATCGATAGTTCGGAGTCCTTGGAGGATCTCTTGAAACATGGCGGCGATCCCTCGAAGATGCCTTCGACGAAAGAGATCCTCAAAATGCTGGACACTTCCAACATACCTGAAGAGCTGAGGGAGAATATGCGGATAATGCTAACGGGAAATACGCCTCAAGTGTTCTCTGGATACGGTTCGATATTAGCGGTCGCATTCGTGTTTTTAATATTCACTATTATATGCGGCGCTTTCTCCGAAAAGGTGTCCGAGATCGTTGATAATATGGACATAAAGACGGTTTTGAAGAAAATGATTGACATGCCACCCGAGGGACAGGACAATGGTGAAACGAAGGAGCAATTGCAGGGGATCTTAGAGAAAATCGAAGCAATGTCCGACGAGGAAAGGGAAGAGTTCATGGCTAAAATCAAGCAAGGATTGATGCAAAAGCTTAATTTTAATCTAGGCCAAAACATTGATCTGTCCGGCTTGGAGACGGCCATCAAGGAAGCTATCGTACAAAAGCTCTATATGGTCGGTGCTATCGTGGCGTTCATAGTGTTCTTATTGCTTGTGTTCTTCGGTTACAAACTGTACAAGTCGATAAAGGACAAAGAAGTCAAGAGGGAAGAAAAGAAAAAGGCTAAACAATTAAAAAAGAAAAAGTAG
Protein
MEDTIDSSESLEDLLKHGGDPSKMPSTKEILKMLDTSNIPEELRENMRIMLTGNTPQVFSGYGSILAVAFVFLIFTIICGAFSEKVSEIVDNMDIKTVLKKMIDMPPEGQDNGETKEQLQGILEKIEAMSDEEREEFMAKIKQGLMQKLNFNLGQNIDLSGLETAIKEAIVQKLYMVGAIVAFIVFLLLVFFGYKLYKSIKDKEVKREEKKKAKQLKKKK

Summary

Uniprot
ProteinModelPortal

Ontologies

GO

Topology

Length:
220
Number of predicted TMHs:
2
Exp number of AAs in TMHs:
44.23738
Exp number, first 60 AAs:
2.347
Total prob of N-in:
0.75253
inside
1  -  57
TMhelix
58  -  80
outside
81  -  174
TMhelix
175  -  197
inside
198  -  220
 
 

Population Genetic Test Statistics

Pi
270.559658
Theta
155.459461
Tajima's D
1.428165
CLR
0.060961
CSRT
0.775711214439278
Interpretation
Uncertain
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