Gene

KWMTBOMO00881  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA009770

Annotation

PREDICTED:_ced-6_protein_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr2(+):5467961-5528218      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.251

CDS

ATGTCGACCCTGCTCTTCTGGCAGGGTAAGGGCAAAGGGAACGGGGCACCGAACGGCCGCAACTGGATCCACGCTCCGGACTCGCTCGTCAAGGGCCACGTCGCCTATCTCGTTAAGTTCCTCGGCTGCACCCAAGTAGACCAGCCGAAAGGCATCGAGGTGGTCAAAGATGCAATCAAGAAACTACAGTTCACACAGCAACTGAAGAAGTCCGAAGCGAAAGATGGCGCGAAATGCAAGAAAGTCGAAATAACGATATCTGTGGACGGTGTTGCCATACAGGAACCACGTTCGAACAATATAATGTACCAGTTCCCTCTCCACCGGATATCGTACTGCGCGGACGATAAAGGCGCCAAGAAATATTTCTCGTTCATCGCGAAAGGTGGCAGCACCGTTAACGGGGTCAACGGCCACGACGCTGGCAACACCGAGAGGCACGAGTGCTTCGTGTTCATTTCCACTAAACTCGCGTCCGAGATCACGCTCACCATCGGACAGGCCTTCGATCTGGCCTACAGGAGATTCTTAAACGACAACGGCAAATACATCGAAATGCAGAAGCTTTCGTTGCAAAACAAAAAGCTTGAACTGCAAATGAAAGCGTACAGGACTAGACTTCAGGAGCTGTCGAAGGTCACGTATAAAGACGACCTCTCCGCCTACCTGGCCAGGAACAGTCTCTCCGACATAACAGAGTTCAAGGTACCCCAGGAGTTGGAGAAGCAGCTCGCCTCGCTGACCTTAGCGAACGGCTTCAGCGCCATGAACGGGAACAAGACCCCTGAAATCGGCACAGACTCCACATCAAACAACTCAACGGACACGTTCAATTCAAGCGACAACAATCTGCTTCTCCCCACCCCGCCGCCGACACATAATGGGAAGATGAGCGCCGGTAAGGGACTCCTCGATCTGCCAAAGAATCCCGTCGTAGGTCCGAGACTTGAGGAGCTAATACTCAACTCAGATTCGGACAGCGATTTTGATCCTCGCGCCCACGAATCGGACCCCGTCCTCCGCTACCCAGGTCTGACCATGGACAGCACGGTGTCACCGGCGCCTCCGTTACTGGCGCCGCCGCCTAAGGCGTCGAAACGTCAAACGCCGCCGCACAACCCGGCGACGCCGCCGCACCAGCCGACGACGCCGCGGCGAGCGCCCGCCGCGAACCCGAGCGACCTGTTCGGCTCGGCGCCGTTCGTGCACAGCTCTACGCCCGCGCAAGCTCCGTTCGCGCCGACGCCCAACTACAACATAAGCGACTTCAACCTCCAAACATCGGTGTTCACGGCGAACCTCACCGGCTACGATCCGTTCGAAGCTCAGAAGACGGGCGCGAACATATTCGGGAACGATTACGCGAACGCGTTCGCCGGCTTCGGGAATCTGAGCGACAAACAGACGGTCGAATTGAACAGCAGCTTCAACGGGTTCCTAGATAAGACCATATCGGAGATGAAGGACGGATTCACGAGGGGCATAACGTTCGGAAACGACGATTTCTCAATAGACAATCTCGATCCTTTAAAGAAAAATTAA

Protein

MSTLLFWQGKGKGNGAPNGRNWIHAPDSLVKGHVAYLVKFLGCTQVDQPKGIEVVKDAIKKLQFTQQLKKSEAKDGAKCKKVEITISVDGVAIQEPRSNNIMYQFPLHRISYCADDKGAKKYFSFIAKGGSTVNGVNGHDAGNTERHECFVFISTKLASEITLTIGQAFDLAYRRFLNDNGKYIEMQKLSLQNKKLELQMKAYRTRLQELSKVTYKDDLSAYLARNSLSDITEFKVPQELEKQLASLTLANGFSAMNGNKTPEIGTDSTSNNSTDTFNSSDNNLLLPTPPPTHNGKMSAGKGLLDLPKNPVVGPRLEELILNSDSDSDFDPRAHESDPVLRYPGLTMDSTVSPAPPLLAPPPKASKRQTPPHNPATPPHQPTTPRRAPAANPSDLFGSAPFVHSSTPAQAPFAPTPNYNISDFNLQTSVFTANLTGYDPFEAQKTGANIFGNDYANAFAGFGNLSDKQTVELNSSFNGFLDKTISEMKDGFTRGITFGNDDFSIDNLDPLKKN

Uniprot

D4QF47   H9JJR9   A0A2H1W0A5   A0A2A4IWS5   S4PTE1   A0A212F6H3   + More
A0A194QZY4   A0A336LRE2   A0A336LM05   A0A1J1HHY9   U5EZS3   A0A084WKQ0   Q7QIK3   A0A2M3YZC8   W5JFH0   A0A1Y1LEH8   A0A2M4CKK0   A0A2M4A0X0   A0A2M4CKQ6   A0A2M3YZ35   D6WT62   A0A182KAB5   A0A182PIK9   A0A182JI39   A0A2M4CIM8   A0A182FEH4   A0A2M3YZ83   A0A2M4A0V9   A0NBM1   A0A2M4A0W3   A0A182GMF1   A0A182TI04   A0A182I6P3   A0A182WWG3   A0A182GTK5   A0A182US69   A0A182L3P9   T1E7P0   A0A182R0U8   A0A182Y7Z5   A0A2A3E8B8   E2AUL6   A0A182MT38   A0A026W3P6   A0A182N9D1   A0A182WBG4   A0A182RJI9   A0A0L7RCD6   A0A1B6CS71   A0A0T6BCG4   A0A310SJA6   V9IC64   A0A0C9QKM5   A0A087ZS23   A0A0M9A8J0   E2BQ59   W8C471   A0A034W0N5   B4MFH3   J9KYP9   A0A0A1XK59  

Pubmed

19121390    23622113    22118469    26354079    24438588    12364791    + More
14747013    17210077    20920257    23761445    28004739    18362917    19820115    26483478    20966253    25244985    20798317    24508170    30249741    24495485    25348373    17994087    18057021    25830018   

EMBL

AB531437    BAJ04619.1    BABH01017682    BABH01017683    BABH01017684    ODYU01005512    + More
SOQ46433.1    NWSH01005373    PCG64265.1    GAIX01012198    JAA80362.1    AGBW02010043    OWR49309.1    KQ460890    KPJ11012.1    UFQT01000063    SSX19273.1    SSX19274.1    CVRI01000003    CRK87028.1    GANO01000253    JAB59618.1    ATLV01024132    KE525349    KFB50794.1    AAAB01008807    EAA04093.4    GGFM01000817    MBW21568.1    ADMH02001370    ETN62821.1    GEZM01058010    GEZM01058009    JAV72024.1    GGFL01001704    MBW65882.1    GGFK01001102    MBW34423.1    GGFL01001705    MBW65883.1    GGFM01000765    MBW21516.1    KQ971354    EFA07168.1    GGFL01001034    MBW65212.1    GGFM01000826    MBW21577.1    GGFK01001078    MBW34399.1    EAU77688.2    GGFK01001133    MBW34454.1    JXUM01074562    JXUM01074563    KQ562837    KXJ75039.1    APCN01003688    JXUM01087381    KQ563629    KXJ73578.1    GAMD01002877    JAA98713.1    AXCN02000560    KZ288340    PBC27744.1    GL442829    EFN62863.1    AXCM01010355    AXCM01010356    KK107447    QOIP01000001    EZA50710.1    RLU26345.1    KQ414615    KOC68657.1    GEDC01021014    JAS16284.1    LJIG01001916    KRT85024.1    KQ764883    OAD54266.1    JR038422    AEY58247.1    GBYB01015338    JAG85105.1    KQ435711    KOX79407.1    GL449698    EFN82178.1    GAMC01005717    GAMC01005716    GAMC01005715    GAMC01005714    JAC00842.1    GAKP01009793    GAKP01009792    GAKP01009791    JAC49161.1    CH940667    EDW57144.1    KRF77625.1    KRF77626.1    ABLF02031199    ABLF02031200    GBXI01016705    GBXI01012555    GBXI01003032    JAC97586.1    JAD01737.1    JAD11260.1   

Proteomes

UP000005204    UP000218220    UP000007151    UP000053240    UP000183832    UP000030765    + More
UP000007062    UP000000673    UP000007266    UP000075881    UP000075885    UP000075880    UP000069272    UP000069940    UP000249989    UP000075902    UP000075840    UP000076407    UP000075903    UP000075882    UP000075886    UP000076408    UP000242457    UP000000311    UP000075883    UP000053097    UP000279307    UP000075884    UP000075920    UP000075900    UP000053825    UP000005203    UP000053105    UP000008237    UP000008792    UP000007819   

PRIDE

D4QF47    H9JJR9   

Pfam

PF00640   PID

Interpro

IPR011993   PH-like_dom_sf        + More
IPR006020   PTB/PI_dom       

Gene 3D

2.30.29.30    

ProteinModelPortal

D4QF47   H9JJR9   A0A2H1W0A5   A0A2A4IWS5   S4PTE1   A0A212F6H3   + More
A0A194QZY4   A0A336LRE2   A0A336LM05   A0A1J1HHY9   U5EZS3   A0A084WKQ0   Q7QIK3   A0A2M3YZC8   W5JFH0   A0A1Y1LEH8   A0A2M4CKK0   A0A2M4A0X0   A0A2M4CKQ6   A0A2M3YZ35   D6WT62   A0A182KAB5   A0A182PIK9   A0A182JI39   A0A2M4CIM8   A0A182FEH4   A0A2M3YZ83   A0A2M4A0V9   A0NBM1   A0A2M4A0W3   A0A182GMF1   A0A182TI04   A0A182I6P3   A0A182WWG3   A0A182GTK5   A0A182US69   A0A182L3P9   T1E7P0   A0A182R0U8   A0A182Y7Z5   A0A2A3E8B8   E2AUL6   A0A182MT38   A0A026W3P6   A0A182N9D1   A0A182WBG4   A0A182RJI9   A0A0L7RCD6   A0A1B6CS71   A0A0T6BCG4   A0A310SJA6   V9IC64   A0A0C9QKM5   A0A087ZS23   A0A0M9A8J0   E2BQ59   W8C471   A0A034W0N5   B4MFH3   J9KYP9   A0A0A1XK59  

PDB

3SO6     E-value=7.52055e-13,     Score=180

KEGG

100415789    K23285 PTB domain-containing engulfment adapter protein 1 | (RefSeq) ced-6; ced-6 protein

GO

GO:0016021   GO:0005515   GO:0046488   GO:0015074   GO:0003676   GO:0005737   GO:0006396   GO:0000166   GO:0004887   GO:0003707  

Length:

513

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00685999999999999

Exp number, first 60 AAs:

0.00017

Total prob of N-in:

0.00114

outside

1  -  513

 

 

Pi

237.439112

Theta

164.89984

Tajima's D

0.512792

CLR

1.964358

CSRT

0.520273986300685

Interpretation

Uncertain