Silkworm Genome Informatics Database

Gene

KWMTBOMO00868

Pre Gene Modal

BGIBMGA009670

Annotation

PREDICTED:_ephrin-B2a_[Amyelois_transitella]

Location

Bomo_Chr2(-):5156467-5157552 View in EpiBrowser

Location in the cell

PlasmaMembrane Reliability : 2.795

CDS

ATGGTGACCCTAACTTCTTTCGGATTGAGACACACACTTTGGACTGTTATAGTTCTGGTTTTCTTCATGGAAAGCGCGATGGGTAACTTCGCTAAATCATTCTACATCCACTGGAATACGACCAACAGCATATTCAGGATCGACAATACAGATCACGTTTTCGATCTGAATAAAGGAAATGCACAATTTGAATATGATCAAGTTAACATAATATGTCCTGTTTATACACCCGGTACATACGAGGAGGATACCGAGAAATATATAATATACAATGTTAGCAAAGAAGAATACGATACGTGTAGAATAACGAATCCAAACCCACGTATTATAGCTATATGCGATAAACCACACAAATTAATGTTTTTCACTATCACATTTCGACCTTTCACACCTCAGCCGGGCGGACTGGAGTTTCTGCCCGGCAAAGACTATTATTTCATATCGACGTCCAGCAAGGATGATCTGCATCGACGCATCGGCGGCCGGTGCCTAACGAATAATATGAAGCTGGTCTTTCGCGTTTGCTGCAAGCCCGAGGATCAGTCTCCGGTACCTCCGCCGCAGCCGACCTTGCCGCCTCCACCCCCGCCGCCGACGACGTCCACGACGACCACGACGACGACAACAAGCAAACCGGTCACCAAAAAGACGCACAAATATGACAAAGCCGAGAATGAGGTGATTAAGAGCGAGGAGCTGTCTCATTCGCGCGGGGCAGCGCTGGCTTCGTCTCTCGCTTTGGCCCTGGCTGCTAGCGCGGTTCTAGCCCCACTGGCTCGGTGA

Protein

MVTLTSFGLRHTLWTVIVLVFFMESAMGNFAKSFYIHWNTTNSIFRIDNTDHVFDLNKGNAQFEYDQVNIICPVYTPGTYEEDTEKYIIYNVSKEEYDTCRITNPNPRIIAICDKPHKLMFFTITFRPFTPQPGGLEFLPGKDYYFISTSSKDDLHRRIGGRCLTNNMKLVFRVCCKPEDQSPVPPPQPTLPPPPPPPTTSTTTTTTTTSKPVTKKTHKYDKAENEVIKSEELSHSRGAALASSLALALAASAVLAPLAR

Similarity

Belongs to the ephrin family.

Uniprot

H9JJG9 Q6VU49 A0A0L7L1N1 A0A2A4J743 A0A2H1V114 A0A212EGV9 + More
A0A194PZJ0 A0A194R562 A0A1B6CNF4 D6W6N4 A0A1Y1MBC6 Q5TXC6

Pubmed

19121390 14684856 26227816 22118469 26354079 18362917 + More
19820115 28004739 12364791 14747013 17210077

EMBL

BABH01017644 AY327250 AAQ67232.1 JTDY01003522 KOB69413.1 NWSH01002947 + More
PCG67242.1 ODYU01000173 SOQ34509.1 AGBW02015009 OWR40714.1 KQ459593 KPI96580.1 KQ460890 KPJ11001.1 GEDC01022336 JAS14962.1 KQ971307 EFA11555.2 GEZM01036950 JAV82318.1 AAAB01008797 EAL42045.3

Proteomes

UP000005204 UP000037510 UP000218220 UP000007151 UP000053268 UP000053240 + More
UP000007266 UP000007062

PRIDE

H9JJG9

Pfam

PF00812 Ephrin

Interpro

IPR031328   Ephrin        + More
IPR001799   Ephrin_RBD
IPR008972   Cupredoxin

SUPFAM

SSF49503 SSF49503

Gene 3D

2.60.40.420

ProteinModelPortal

H9JJG9 Q6VU49 A0A0L7L1N1 A0A2A4J743 A0A2H1V114 A0A212EGV9 + More
A0A194PZJ0 A0A194R562 A0A1B6CNF4 D6W6N4 A0A1Y1MBC6 Q5TXC6

PDB

3GXU E-value=2.19644e-14, Score=190

KEGG

101736464 K05463 ephrin-B | (RefSeq) ephrin-B2a

GO

GO:0016021 GO:0016020 GO:0048013 GO:0005886 GO:0046875 GO:0007411 GO:0006508 GO:0015074 GO:0003676 GO:0005737 GO:0006396 GO:0000166 GO:0004887 GO:0003707

PANTHER

PTHR11304

SignalP

Position: 1 - 28, Likelihood: 0.856805

Length:

260

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

24.53223

Exp number, first 60 AAs:

17.86028

Total prob of N-in:

0.60366

POSSIBLE N-term signal

sequence

inside

1 - 6

TMhelix

7 - 26

outside

27 - 260

Pi

213.832667

Theta

196.475203

Tajima's D

0.282259

CLR

1.294045

CSRT

0.442077896105195

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics