SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO00863
Annotation
PREDICTED:_uncharacterized_protein_K02A2.6-like_[Papilio_machaon]
Location in the cell
Nuclear   Reliability : 3.904
 

Sequence

CDS
ATGTCGAAAATAGAAGAAAAAAACGACGATCTAGACTATTACGACATAGAAAACTCGGATCTTGAACAACCTGATATAGTGACGCTAGTTAAACAAGGCAAACGCACATTTATATACAAGTGTAACAAACAACAACTACAAAATATTCTTGAGAGTGAAAACGTAACTTATAAATCGGAAGCAACACTTGATCAACTACGAAAATTAACGAGTGATTACTATAAATTAAAAGAAACTAACAAAAATAGTGCTCAGTTATCAGCCAACATGTCACTTATATCAAATTTGAAATCCTTTGATGGAGAAAAGTGGTCAGTGTTCCAGGAACAGTTAGACTATTTCTTTATCGTTAATGAAGTGTCCGATGAAAAAAAAGTACCACTATTAATCACTAAATTAGCACCCAAAGTTTATGAAGTCCTCTCTTATTTATGTAAACCAAAAAAACCACAGGATCTAAAATTTGACCAACTTTGTTTCAAGTTAGCAGCAAAATATGATCAAAAACTACCATCAGCCATTGAAAGAGCAAATTTCAGACAGCGGAACCAGGCACCGAATGAAAAAGTAGAAAATTACGTCTTGGAACTGAGGAAACTTGCTGCAAAATGTAACTTCAAAGATATGGAGGACCAAGTCAAAGAGAAACTAATGGACGGAGTGTCCTCAAAAATGATAAAGTTTGAATTGATGAAGAGTGCTGGTGATGCAACACTAGAAAGGTGTATTGAATTAGCCCGCACTGTTGAAGCAGCAATATTACAAACAAACGGGGCCACAAATGAAGTTGCGGAAATATTTGTCAGCAAATCAACCAATAAATCACCACAACAGCAAAGAAATACCTACCAACAAAAAAATCAATGTTACTGCTGCGGAAAATGGAACCACCTAAAGCGGGACTGCAGACTCAATAGAAAATATTGCTCTGAATGTGGAATTCAAGGACACATCTTCAGAATGTGTCCCAAGAAGCAAAGAAAAGTAAATGTTCTGCAGGAAGATAACCAACAAAAGGATAAAAATACAGATAATGAACCCACTGAGTTTGAACCAAAATATTATGAAACATATGCATGTAACACTGTGAGTAAAATACCACCTTACTACATAACCATAAAAATGGAGGAGTGTAAGCTACCATTTCAACTAGACACAGGCTCAGAAGTGACAGTAATCACGGAAAATGACAAAAATGACATTTTAATAAACCACGTACTGCAAGATTGTGACATAATATTTAAAAATTTCGATCAATCCACAACAAGGCCACTAGGCATAGTTCATAATATATCTGTAGAATATGGTAACAGAAGTGTTTACTTAAAAGCTTTTGTAGTAAAAAATAAGTCACCCCGCATAATAGGCAGAGATTGGCTAAACGCCTTAGGTTTGTGGCCACCGAAAATAGGAAAAGAATTTGAAATTTATAATAATAATATTTTAAATGTTTCAGATGCACAAAATAGTATAGAAAAAAAATTCGCAGCAGTATTCAGCCCAGGCTGGGGAAATTTCAAAGGCGATGTCATAAATTTAGTTTTGAAAAAGGAGGTAGAACCCAAGTGTTTACCAGTGAGACGCGTACCATATGCTCTTAAGGACAAAGTAAATAATGAAATAAAAAGATTATTGGACAATGGTAGGATCACAGTAGTAAAACACAGTAAATGGGGCACCCCTGTAGTACCAATTTTAAAATCGGATGGTTCAGTAAGATTGTGTGGAGATTACAAGTTAACAGTAAACAAGTGTTTGGAAGTAGATCATTTCCCTTTACCGCATGTTGAAGACATTATAAACACCCTACAAGGGGGCGAATATTACTGCGAATTGGACTTAAAAGAAGCTGTCTGCGCCAGTACTTCACATACGAGCGGGGACTACGAGGTCTGCGGGGGGGTCCAACCACCACCACGGCATCGACGACTCGAGCGGCGAGGACCGAACATACACAGCGACACAGAACACTACTGGAACGATATAGAATCGCACGCGCGACTCGCGGCTAATATTGCAAATACTTTATATACAGTCCACCTAACAATAAAACCTCAAGAACAAAACCTTTATTTTACTGAGCTATCGAACATAATGGTCCCAAGTGGAAGAAGAGCCGTCTTATAA
Protein
MSKIEEKNDDLDYYDIENSDLEQPDIVTLVKQGKRTFIYKCNKQQLQNILESENVTYKSEATLDQLRKLTSDYYKLKETNKNSAQLSANMSLISNLKSFDGEKWSVFQEQLDYFFIVNEVSDEKKVPLLITKLAPKVYEVLSYLCKPKKPQDLKFDQLCFKLAAKYDQKLPSAIERANFRQRNQAPNEKVENYVLELRKLAAKCNFKDMEDQVKEKLMDGVSSKMIKFELMKSAGDATLERCIELARTVEAAILQTNGATNEVAEIFVSKSTNKSPQQQRNTYQQKNQCYCCGKWNHLKRDCRLNRKYCSECGIQGHIFRMCPKKQRKVNVLQEDNQQKDKNTDNEPTEFEPKYYETYACNTVSKIPPYYITIKMEECKLPFQLDTGSEVTVITENDKNDILINHVLQDCDIIFKNFDQSTTRPLGIVHNISVEYGNRSVYLKAFVVKNKSPRIIGRDWLNALGLWPPKIGKEFEIYNNNILNVSDAQNSIEKKFAAVFSPGWGNFKGDVINLVLKKEVEPKCLPVRRVPYALKDKVNNEIKRLLDNGRITVVKHSKWGTPVVPILKSDGSVRLCGDYKLTVNKCLEVDHFPLPHVEDIINTLQGGEYYCELDLKEAVCASTSHTSGDYEVCGGVQPPPRHRRLERRGPNIHSDTEHYWNDIESHARLAANIANTLYTVHLTIKPQEQNLYFTELSNIMVPSGRRAVL

Summary

EMBL
HADZ01011823    HAEA01016148    SBP75764.1    GEDC01013717    JAS23581.1    LBMM01006119    + More
KMQ90911.1    GEDC01021971    JAS15327.1    GEFM01006397    JAP69399.1    GEDC01007675    GEDC01003661    JAS29623.1    JAS33637.1    HAEB01010230    SBQ56757.1    GEDC01023506    GEDC01023205    JAS13792.1    JAS14093.1    ABLF02012266    ABLF02012271    GGMR01020219    MBY32838.1    ABLF02036937    NIVC01000860    PAA75827.1    GGMR01017626    MBY30245.1    GFAC01001149    JAT98039.1    LBMM01008360    KMQ88942.1    GEZM01085308    JAV60010.1    ABLF02026830    ABLF02041879    ABLF02006499    ABLF02030002    AAZX01023237    LBMM01010146    KMQ87646.1    HADX01010638    SBP32870.1    ABLF02016687    ABLF02016690    GGLE01005288    MBY09414.1    KL367479    KFD72009.1    GEZM01051399    JAV74971.1    LBMM01008052    KMQ89188.1    GEZM01050895    JAV75318.1    JYDW01000004    KRZ62956.1    JYDJ01000151    KRX42156.1    KMQ89189.1    KL363215    KFD53596.1    KL363295    KFD48373.1    ABLF02012827    ABLF02012828    ABLF02015552    ABLF02041322    ABLF02008248    ABLF02008249    ABLF02008250    ABLF02035153    ABLF02037855    ABLF02037866    ABLF02061872    GEZM01036245    JAV82862.1    KV461060    OCA14951.1    GEGO01007419    JAR87985.1    GEZM01014356    JAV92133.1    ABLF02011319    ABLF02014651    ABLF02041920    NIVC01000555    PAA80976.1    GEZM01005739    JAV95951.1    GEZM01009753    JAV94337.1    GEZM01005740    JAV95950.1    GEZM01051545    GEZM01051542    JAV74826.1    GEZM01051546    GEZM01051543    JAV74825.1    KL367515    KFD67420.1    EF199622    ABM90393.1    GFPF01012842    MAA23988.1    GGMR01001051    MBY13670.1    GEZM01092768    GEZM01092767    JAV56467.1    JYDW01000348    KRZ48953.1    JYDN01000181    KRX54093.1    NIVC01000363    PAA84717.1    KL363340    KFD47113.1    EF199621    ABM90392.1    NIVC01001652    PAA65446.1    MRZV01000174    PIK56483.1    JYDH01000010    KRY40903.1    NIVC01000538    PAA81343.1    NIVC01001308    PAA69606.1    KRX54109.1    ODYU01001427    SOQ37599.1    KL367520    KFD66862.1    KL363326    KFD47456.1    GFWV01017841    MAA42569.1    JYDL01000185    KRX13745.1    HAAD01006009    CDG72241.1    KK857512    PTY27246.1    JYDN01000036    KRX62850.1    KL367649    KFD60777.1    KL363212    KFD53932.1    NIVC01001377    PAA68677.1    ABLF02025265    ABLF02025271    ABLF02025272    NIVC01000264    PAA86792.1    GGMR01010825    MBY23444.1    JYDO01000426    KRZ65264.1    NIVC01000183    PAA88548.1    GBHO01031997    JAG11607.1   
Pfam
PF00078   RVT_1        + More
PF00665   rve
PF17921   Integrase_H2C2
PF17919   RT_RNaseH_2
PF00098   zf-CCHC
PF03732   Retrotrans_gag
PF17917   RT_RNaseH
PF00176   SNF2_N
PF00271   Helicase_C
PF05918   API5
PF00077   RVP
PF05485   THAP
PF07727   RVT_2
PF13976   gag_pre-integrs
Interpro
IPR021109   Peptidase_aspartic_dom_sf        + More
IPR041588   Integrase_H2C2       
IPR036397   RNaseH_sf       
IPR000477   RT_dom       
IPR001584   Integrase_cat-core       
IPR041577   RT_RNaseH_2       
IPR012337   RNaseH-like_sf       
IPR036875   Znf_CCHC_sf       
IPR001878   Znf_CCHC       
IPR001969   Aspartic_peptidase_AS       
IPR005162   Retrotrans_gag_dom       
IPR041373   RT_RNaseH       
IPR001995   Peptidase_A2_cat       
IPR016024   ARM-type_fold       
IPR014001   Helicase_ATP-bd       
IPR001650   Helicase_C       
IPR008383   API5       
IPR038718   SNF2-like_sf       
IPR027417   P-loop_NTPase       
IPR000330   SNF2_N       
IPR018061   Retropepsins       
IPR006612   THAP_Znf       
IPR034128   K02A2.6-like       
IPR009068   S15_NS1_RNA-bd       
IPR013103   RVT_2       
IPR025724   GAG-pre-integrase_dom       
IPR008936   Rho_GTPase_activation_prot       
SUPFAM
SSF50630   SSF50630        + More
SSF53098   SSF53098       
SSF57756   SSF57756       
SSF52540   SSF52540       
SSF48371   SSF48371       
SSF47060   SSF47060       
SSF48350   SSF48350       
Gene 3D
PDB
4OL8     E-value=7.74862e-09,     Score=147

Ontologies

Topology

Length:
708
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00038
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00051
outside
1  -  708
 
 

Population Genetic Test Statistics

Pi
404.960242
Theta
179.774125
Tajima's D
4.078931
CLR
0.236693
CSRT
0.999200039998
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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