Gene

KWMTBOMO00863

Annotation

PREDICTED:_uncharacterized_protein_K02A2.6-like_[Papilio_machaon]

Location

Bomo_Chr2(+):5014013-5016302      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.904

CDS

ATGTCGAAAATAGAAGAAAAAAACGACGATCTAGACTATTACGACATAGAAAACTCGGATCTTGAACAACCTGATATAGTGACGCTAGTTAAACAAGGCAAACGCACATTTATATACAAGTGTAACAAACAACAACTACAAAATATTCTTGAGAGTGAAAACGTAACTTATAAATCGGAAGCAACACTTGATCAACTACGAAAATTAACGAGTGATTACTATAAATTAAAAGAAACTAACAAAAATAGTGCTCAGTTATCAGCCAACATGTCACTTATATCAAATTTGAAATCCTTTGATGGAGAAAAGTGGTCAGTGTTCCAGGAACAGTTAGACTATTTCTTTATCGTTAATGAAGTGTCCGATGAAAAAAAAGTACCACTATTAATCACTAAATTAGCACCCAAAGTTTATGAAGTCCTCTCTTATTTATGTAAACCAAAAAAACCACAGGATCTAAAATTTGACCAACTTTGTTTCAAGTTAGCAGCAAAATATGATCAAAAACTACCATCAGCCATTGAAAGAGCAAATTTCAGACAGCGGAACCAGGCACCGAATGAAAAAGTAGAAAATTACGTCTTGGAACTGAGGAAACTTGCTGCAAAATGTAACTTCAAAGATATGGAGGACCAAGTCAAAGAGAAACTAATGGACGGAGTGTCCTCAAAAATGATAAAGTTTGAATTGATGAAGAGTGCTGGTGATGCAACACTAGAAAGGTGTATTGAATTAGCCCGCACTGTTGAAGCAGCAATATTACAAACAAACGGGGCCACAAATGAAGTTGCGGAAATATTTGTCAGCAAATCAACCAATAAATCACCACAACAGCAAAGAAATACCTACCAACAAAAAAATCAATGTTACTGCTGCGGAAAATGGAACCACCTAAAGCGGGACTGCAGACTCAATAGAAAATATTGCTCTGAATGTGGAATTCAAGGACACATCTTCAGAATGTGTCCCAAGAAGCAAAGAAAAGTAAATGTTCTGCAGGAAGATAACCAACAAAAGGATAAAAATACAGATAATGAACCCACTGAGTTTGAACCAAAATATTATGAAACATATGCATGTAACACTGTGAGTAAAATACCACCTTACTACATAACCATAAAAATGGAGGAGTGTAAGCTACCATTTCAACTAGACACAGGCTCAGAAGTGACAGTAATCACGGAAAATGACAAAAATGACATTTTAATAAACCACGTACTGCAAGATTGTGACATAATATTTAAAAATTTCGATCAATCCACAACAAGGCCACTAGGCATAGTTCATAATATATCTGTAGAATATGGTAACAGAAGTGTTTACTTAAAAGCTTTTGTAGTAAAAAATAAGTCACCCCGCATAATAGGCAGAGATTGGCTAAACGCCTTAGGTTTGTGGCCACCGAAAATAGGAAAAGAATTTGAAATTTATAATAATAATATTTTAAATGTTTCAGATGCACAAAATAGTATAGAAAAAAAATTCGCAGCAGTATTCAGCCCAGGCTGGGGAAATTTCAAAGGCGATGTCATAAATTTAGTTTTGAAAAAGGAGGTAGAACCCAAGTGTTTACCAGTGAGACGCGTACCATATGCTCTTAAGGACAAAGTAAATAATGAAATAAAAAGATTATTGGACAATGGTAGGATCACAGTAGTAAAACACAGTAAATGGGGCACCCCTGTAGTACCAATTTTAAAATCGGATGGTTCAGTAAGATTGTGTGGAGATTACAAGTTAACAGTAAACAAGTGTTTGGAAGTAGATCATTTCCCTTTACCGCATGTTGAAGACATTATAAACACCCTACAAGGGGGCGAATATTACTGCGAATTGGACTTAAAAGAAGCTGTCTGCGCCAGTACTTCACATACGAGCGGGGACTACGAGGTCTGCGGGGGGGTCCAACCACCACCACGGCATCGACGACTCGAGCGGCGAGGACCGAACATACACAGCGACACAGAACACTACTGGAACGATATAGAATCGCACGCGCGACTCGCGGCTAATATTGCAAATACTTTATATACAGTCCACCTAACAATAAAACCTCAAGAACAAAACCTTTATTTTACTGAGCTATCGAACATAATGGTCCCAAGTGGAAGAAGAGCCGTCTTATAA

Protein

MSKIEEKNDDLDYYDIENSDLEQPDIVTLVKQGKRTFIYKCNKQQLQNILESENVTYKSEATLDQLRKLTSDYYKLKETNKNSAQLSANMSLISNLKSFDGEKWSVFQEQLDYFFIVNEVSDEKKVPLLITKLAPKVYEVLSYLCKPKKPQDLKFDQLCFKLAAKYDQKLPSAIERANFRQRNQAPNEKVENYVLELRKLAAKCNFKDMEDQVKEKLMDGVSSKMIKFELMKSAGDATLERCIELARTVEAAILQTNGATNEVAEIFVSKSTNKSPQQQRNTYQQKNQCYCCGKWNHLKRDCRLNRKYCSECGIQGHIFRMCPKKQRKVNVLQEDNQQKDKNTDNEPTEFEPKYYETYACNTVSKIPPYYITIKMEECKLPFQLDTGSEVTVITENDKNDILINHVLQDCDIIFKNFDQSTTRPLGIVHNISVEYGNRSVYLKAFVVKNKSPRIIGRDWLNALGLWPPKIGKEFEIYNNNILNVSDAQNSIEKKFAAVFSPGWGNFKGDVINLVLKKEVEPKCLPVRRVPYALKDKVNNEIKRLLDNGRITVVKHSKWGTPVVPILKSDGSVRLCGDYKLTVNKCLEVDHFPLPHVEDIINTLQGGEYYCELDLKEAVCASTSHTSGDYEVCGGVQPPPRHRRLERRGPNIHSDTEHYWNDIESHARLAANIANTLYTVHLTIKPQEQNLYFTELSNIMVPSGRRAVL

Uniprot

A0A3P8NHI5   A0A3P8QD94   A0A1A8C840   A0A1B6DD07   A0A0J7KL04   A0A1B6CPB9   + More
A0A131XQT5   A0A1B6E6W0   A0A1A8FCH6   A0A1X7TIE8   A0A3P8RGT3   A0A3Q0JIZ3   A0A1B6CK52   X1XT86   A0A2S2PU23   J9KFN3   A0A267FRX0   A0A3P8Q506   A0A3P8NG55   A0A2S2PLE8   A0A1E1XG22   A0A3B3H2N7   A0A1X7TH22   A0A0J7KF98   A0A1Y1KIG3   J9KZ86   X1WXW3   J9LDN7   J9KQR5   K7JW34   A0A0J7KBM1   A0A1S3KHX3   A0A1A7YSF0   J9L709   A0A2R5LIR9   A0A085NRB3   A0A2I4C6V0   A0A1Y1LPV1   A0A0J7KFJ3   A0A1Y1LR51   A0A0V1LU74   A0A0V0TT39   A0A3P8NEQ7   A0A0J7KG11   A0A1X7TR37   A0A085M8Q0   A0A085LTS7   J9L142   X1WTX7   A0A1Y1MAK2   A0A1S3J391   A0A1B8XWC1   A0A147BCB7   A0A1Y1N2I4   A0A2R2MK13   J9JQE4   A0A267G4Q7   A0A1Y1NDL2   A0A1Y1NFA4   A0A1Y1NGB8   A0A1Y1LTC6   A0A1Y1LSF9   A0A085ND74   A2TGR5   A0A224Z2A6   A0A2S2N957   A0A1Y1KCE7   A0A0V1KNI7   A0A0V0USW3   A0A267GH18   A0A085LQ67   A2TGR4   A0A267EVG4   A0A2G8L891   A0A0V1BVI1   A0A267G5M8   A0A267F772   A0A3B3R045   A0A0V0USX8   A0A2H1V9U2   A0A085NBL6   A0A085LR60   A0A293MR82   A0A0V0RGX3   T2MJH3   A0A2R7X643   A0A0V0VH28   A0A085MU81   A0A085M9N6   A0A267F699   J9KDA1   A0A267GNB6   A0A2S2P240   A0A0V1M0M6   A0A267GR92   A0A0A9WT47  

Pubmed

28503490    17554307    28004739    20075255    24929829    26383154    + More
20431018    29652888    17694394    28797301    29023486    29240929    24065732    25401762   

EMBL

HADZ01011823    HAEA01016148    SBP75764.1    GEDC01013717    JAS23581.1    LBMM01006119    + More
KMQ90911.1    GEDC01021971    JAS15327.1    GEFM01006397    JAP69399.1    GEDC01007675    GEDC01003661    JAS29623.1    JAS33637.1    HAEB01010230    SBQ56757.1    GEDC01023506    GEDC01023205    JAS13792.1    JAS14093.1    ABLF02012266    ABLF02012271    GGMR01020219    MBY32838.1    ABLF02036937    NIVC01000860    PAA75827.1    GGMR01017626    MBY30245.1    GFAC01001149    JAT98039.1    LBMM01008360    KMQ88942.1    GEZM01085308    JAV60010.1    ABLF02026830    ABLF02041879    ABLF02006499    ABLF02030002    AAZX01023237    LBMM01010146    KMQ87646.1    HADX01010638    SBP32870.1    ABLF02016687    ABLF02016690    GGLE01005288    MBY09414.1    KL367479    KFD72009.1    GEZM01051399    JAV74971.1    LBMM01008052    KMQ89188.1    GEZM01050895    JAV75318.1    JYDW01000004    KRZ62956.1    JYDJ01000151    KRX42156.1    KMQ89189.1    KL363215    KFD53596.1    KL363295    KFD48373.1    ABLF02012827    ABLF02012828    ABLF02015552    ABLF02041322    ABLF02008248    ABLF02008249    ABLF02008250    ABLF02035153    ABLF02037855    ABLF02037866    ABLF02061872    GEZM01036245    JAV82862.1    KV461060    OCA14951.1    GEGO01007419    JAR87985.1    GEZM01014356    JAV92133.1    ABLF02011319    ABLF02014651    ABLF02041920    NIVC01000555    PAA80976.1    GEZM01005739    JAV95951.1    GEZM01009753    JAV94337.1    GEZM01005740    JAV95950.1    GEZM01051545    GEZM01051542    JAV74826.1    GEZM01051546    GEZM01051543    JAV74825.1    KL367515    KFD67420.1    EF199622    ABM90393.1    GFPF01012842    MAA23988.1    GGMR01001051    MBY13670.1    GEZM01092768    GEZM01092767    JAV56467.1    JYDW01000348    KRZ48953.1    JYDN01000181    KRX54093.1    NIVC01000363    PAA84717.1    KL363340    KFD47113.1    EF199621    ABM90392.1    NIVC01001652    PAA65446.1    MRZV01000174    PIK56483.1    JYDH01000010    KRY40903.1    NIVC01000538    PAA81343.1    NIVC01001308    PAA69606.1    KRX54109.1    ODYU01001427    SOQ37599.1    KL367520    KFD66862.1    KL363326    KFD47456.1    GFWV01017841    MAA42569.1    JYDL01000185    KRX13745.1    HAAD01006009    CDG72241.1    KK857512    PTY27246.1    JYDN01000036    KRX62850.1    KL367649    KFD60777.1    KL363212    KFD53932.1    NIVC01001377    PAA68677.1    ABLF02025265    ABLF02025271    ABLF02025272    NIVC01000264    PAA86792.1    GGMR01010825    MBY23444.1    JYDO01000426    KRZ65264.1    NIVC01000183    PAA88548.1    GBHO01031997    JAG11607.1   

Proteomes

UP000265100    UP000036403    UP000007879    UP000079169    UP000007819    UP000215902    + More
UP000001038    UP000002358    UP000087266    UP000192220    UP000054721    UP000055048    UP000085678    UP000008143    UP000054681    UP000230750    UP000054776    UP000261540    UP000054630    UP000054843   

Pfam

PF00078   RVT_1        + More
PF00665   rve
PF17921   Integrase_H2C2
PF17919   RT_RNaseH_2
PF00098   zf-CCHC
PF03732   Retrotrans_gag
PF17917   RT_RNaseH
PF00176   SNF2_N
PF00271   Helicase_C
PF05918   API5
PF00077   RVP
PF05485   THAP
PF07727   RVT_2
PF13976   gag_pre-integrs

Interpro

IPR021109   Peptidase_aspartic_dom_sf        + More
IPR041588   Integrase_H2C2       
IPR036397   RNaseH_sf       
IPR000477   RT_dom       
IPR001584   Integrase_cat-core       
IPR041577   RT_RNaseH_2       
IPR012337   RNaseH-like_sf       
IPR036875   Znf_CCHC_sf       
IPR001878   Znf_CCHC       
IPR001969   Aspartic_peptidase_AS       
IPR005162   Retrotrans_gag_dom       
IPR041373   RT_RNaseH       
IPR001995   Peptidase_A2_cat       
IPR016024   ARM-type_fold       
IPR014001   Helicase_ATP-bd       
IPR001650   Helicase_C       
IPR008383   API5       
IPR038718   SNF2-like_sf       
IPR027417   P-loop_NTPase       
IPR000330   SNF2_N       
IPR018061   Retropepsins       
IPR006612   THAP_Znf       
IPR034128   K02A2.6-like       
IPR009068   S15_NS1_RNA-bd       
IPR013103   RVT_2       
IPR025724   GAG-pre-integrase_dom       
IPR008936   Rho_GTPase_activation_prot       

SUPFAM

SSF50630   SSF50630        + More
SSF53098   SSF53098       
SSF57756   SSF57756       
SSF52540   SSF52540       
SSF48371   SSF48371       
SSF47060   SSF47060       
SSF48350   SSF48350       

Gene 3D

2.40.70.10     3.30.420.10     3.40.50.10810    

CDD

cd00079  HELICc
cd05484  retropepsin_like_LTR_2

ProteinModelPortal

A0A3P8NHI5   A0A3P8QD94   A0A1A8C840   A0A1B6DD07   A0A0J7KL04   A0A1B6CPB9   + More
A0A131XQT5   A0A1B6E6W0   A0A1A8FCH6   A0A1X7TIE8   A0A3P8RGT3   A0A3Q0JIZ3   A0A1B6CK52   X1XT86   A0A2S2PU23   J9KFN3   A0A267FRX0   A0A3P8Q506   A0A3P8NG55   A0A2S2PLE8   A0A1E1XG22   A0A3B3H2N7   A0A1X7TH22   A0A0J7KF98   A0A1Y1KIG3   J9KZ86   X1WXW3   J9LDN7   J9KQR5   K7JW34   A0A0J7KBM1   A0A1S3KHX3   A0A1A7YSF0   J9L709   A0A2R5LIR9   A0A085NRB3   A0A2I4C6V0   A0A1Y1LPV1   A0A0J7KFJ3   A0A1Y1LR51   A0A0V1LU74   A0A0V0TT39   A0A3P8NEQ7   A0A0J7KG11   A0A1X7TR37   A0A085M8Q0   A0A085LTS7   J9L142   X1WTX7   A0A1Y1MAK2   A0A1S3J391   A0A1B8XWC1   A0A147BCB7   A0A1Y1N2I4   A0A2R2MK13   J9JQE4   A0A267G4Q7   A0A1Y1NDL2   A0A1Y1NFA4   A0A1Y1NGB8   A0A1Y1LTC6   A0A1Y1LSF9   A0A085ND74   A2TGR5   A0A224Z2A6   A0A2S2N957   A0A1Y1KCE7   A0A0V1KNI7   A0A0V0USW3   A0A267GH18   A0A085LQ67   A2TGR4   A0A267EVG4   A0A2G8L891   A0A0V1BVI1   A0A267G5M8   A0A267F772   A0A3B3R045   A0A0V0USX8   A0A2H1V9U2   A0A085NBL6   A0A085LR60   A0A293MR82   A0A0V0RGX3   T2MJH3   A0A2R7X643   A0A0V0VH28   A0A085MU81   A0A085M9N6   A0A267F699   J9KDA1   A0A267GNB6   A0A2S2P240   A0A0V1M0M6   A0A267GR92   A0A0A9WT47  

PDB

4OL8     E-value=7.74862e-09,     Score=147

KEGG

101737521    no KO assigned | (RefSeq) uncharacterized LOC101737521

GO

GO:0008270   GO:0003676   GO:0003964   GO:0015074   GO:0004190   GO:0005524   GO:0003677   GO:0005634   GO:0007165   GO:0043565   GO:0006741   GO:0005737   GO:0006396   GO:0000166   GO:0004887   GO:0003707   GO:0016021  

Length:

708

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00038

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00051

outside

1  -  708

 

 

Pi

404.960242

Theta

179.774125

Tajima's D

4.078931

CLR

0.236693

CSRT

0.999200039998

Interpretation

Uncertain