Gene

KWMTBOMO00855

Pre Gene Modal

BGIBMGA002957

Annotation

PREDICTED:_zinc_finger_CCHC_domain-containing_protein_13-like_[Bombyx_mori]

Location

Bomo_Chr2(-):4568403-4570428      View in EpiBrowser

Full name

Gag polyprotein      

Location in the cell

Nuclear   Reliability : 3.595

CDS

ATGCCAGGCCCATGCATTGACGGATTTGAGACCGCTGAGAAACACAGGCGATACAAAATGCGACGTGTCACCCAAACCGATGCGGAGGTTATTCCAACGTTCCGGCCGGATGAAAAATCTAGCAACGTCAAGGGATGGCTGCACAAGATCGACCAGTTGGATCACGTATATGGATGGGACAACAAAGACTGCCAGTTCATCATGCAGATATGTCTTCGTGGGTCGGCTAGGGATTGTGCGATACACCACCGCAACTATACTACACATCCGCGAATGGCTACCACATGGAGAAGAGAAGGTGCTGTTGCTCCAGTTGCAAGAGGGACCGACTTTCAACCAAAGAAATGTTACGCCTGCCGAAGAGAAGGTCATGAAACAAAGAACTGCAAAGCGCCGCGCTGCGAGGTGTGCCATCGCCCGGGACACACGTCGGTGCCAAAGACCAGCGACAAAGCAGGCGCCAATAGCAGCGCTGATCGCCGTGGGACACGGCATACACAGGATGGCCGAATGTTATCGAGCAACACTTCCGGCCTCTAA

Protein

MPGPCIDGFETAEKHRRYKMRRVTQTDAEVIPTFRPDEKSSNVKGWLHKIDQLDHVYGWDNKDCQFIMQICLRGSARDCAIHHRNYTTHPRMATTWRREGAVAPVARGTDFQPKKCYACRREGHETKNCKAPRCEVCHRPGHTSVPKTSDKAGANSSADRRGTRHTQDGRMLSSNTSGL

Similarity

Belongs to the primate lentivirus group gag polyprotein family.

Uniprot

Q87621   C9DX50   A0A0U3A2M0   A0A2L1KXV4   A0A0U3A1D2   A0A2L1KVN3   + More
A0A1V0G303   A0A386QZM5   C9DX58   A0A1P8NZU9   C9DX54   C9DX66   C9DX57   C9DX56   C9DX59   C9DX53   C9DX52   C9DX47   C9DX51   C9DX67   C9DX48   C9DX60   C9DX46   C9DX49   C9DX45   C9DX64   R9WYX4   C9DX61  

Pubmed

8661445    22039546    28912582    29389981    28077647    23741489    + More

EMBL

U42720    AAB47723.1    GQ431487    ACV94462.1    KT339967    ALT16812.1    + More
MF109656    AVE27377.1    KT339966    ALT16811.1    MF109383    AVE26584.1    KX377091    ARB66080.1    MH971686    AYE55541.1    GQ431497    ACV94470.1    KY392769    APX54761.1    GQ431492    ACV94466.1    GQ431506    ACV94478.1    GQ431495    ACV94469.1    GQ431494    ACV94468.1    GQ431498    ACV94471.1    GQ431491    ACV94465.1    GQ431490    ACV94464.1    GQ431483    ACV94459.1    GQ431488    ACV94463.1    GQ431507    ACV94479.1    GQ431484    ACV94460.1    GQ431499    ACV94472.1    GQ431482    ACV94458.1    GQ431486    ACV94461.1    GQ431481    ACV94457.1    GQ431504    ACV94476.1    KC899007    AGO06339.1    GQ431500    ACV94473.1   

Proteomes

UP000246900    UP000124355   

Pfam

PF00540   Gag_p17        + More
PF00607   Gag_p24
PF00098   zf-CCHC
PF08705   Gag_p6

Interpro

IPR010999   Retrovr_matrix        + More
IPR000071   Lentvrl_matrix_N       
IPR001878   Znf_CCHC       
IPR036875   Znf_CCHC_sf       
IPR000721   Gag_p24       
IPR008919   Retrov_capsid_N       
IPR008916   Retrov_capsid_C       
IPR012344   Matrix_HIV/RSV_N       
IPR014817   Gag_p6       

SUPFAM

SSF57756   SSF57756        + More
SSF47836   SSF47836       
SSF47943   SSF47943       

Gene 3D

1.10.1200.30     1.10.150.90     1.10.375.10    

ProteinModelPortal

Q87621   C9DX50   A0A0U3A2M0   A0A2L1KXV4   A0A0U3A1D2   A0A2L1KVN3   + More
A0A1V0G303   A0A386QZM5   C9DX58   A0A1P8NZU9   C9DX54   C9DX66   C9DX57   C9DX56   C9DX59   C9DX53   C9DX52   C9DX47   C9DX51   C9DX67   C9DX48   C9DX60   C9DX46   C9DX49   C9DX45   C9DX64   R9WYX4   C9DX61  

PDB

5O2U     E-value=0.008842,     Score=87

KEGG

101744763    no KO assigned | (RefSeq) zinc finger CCHC domain-containing protein 13-like

GO

GO:0039702   GO:0008270   GO:0030430   GO:0003723   GO:0019013   GO:0042025   GO:0005198   GO:0016032   GO:0003676   GO:0031625   GO:0006741   GO:0005737   GO:0006396   GO:0000166   GO:0004887   GO:0003707   GO:0016021  

Subcellular location

Virion  
Host nucleus  
Host cytoplasm  

Length:

179

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01566

outside

1  -  179

 

 

Pi

256.313926

Theta

125.69454

Tajima's D

-1.161838

CLR

0

CSRT

0.109344532773361

Interpretation

Uncertain