SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO00853  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA009674
Annotation
PREDICTED:_cullin-1_[Papilio_machaon]
Full name
Cullin-1      
Location in the cell
Nuclear   Reliability : 3.501
 

Sequence

CDS
ATGAGTACTAGTAATGCCAACAGACCCCAAGTGCCGCTGCGGCAAAAGGACTTTGATCAGATATGGGGCGATCTTCAAGAGGGAATCGAACAAGTTTACAAAAAACAGTACATGGTCAAGAGACGATACATAGATCTGTATACTCACGTATACAATTATTGTACGTCGGTTCATCATCATAGCGCCGGTAGCTCCAGCAGAGTGCCTCAAAATAACATAGGAAGGGTCTCTTATACTGGAAAGAAACAGACTGGTCAAGTCCAGCAAGGCGGGGCTCAGCTCGTTGGTCTGGAATTGTACAAAAGGCTTAAAGAGTTCCTCAGGATTTACCTCATCAATCTGCTGCAGAATGGCGCCGACCTCATGGGCGAAGACGTATTGGCGTTTTACACTAAGCAGTGGGAGGAATATCAGTTTTCTTCCAGGGTGCTGAATGGAGTATGCTCTTACTTGAATCGGCATTGGGTTAAGCGCGAATGCGAAGAGGGTCGCAAGGGTATTTTTGAAATATACCAGTTGGCCCTGGTCACGTGGCGTGACAACCTCTTCCAGTGCCTGAACAAGCAAGTCACCAACGCCGTCTTGAAGCTCATCGAAAGAGAACGCAACGGGGAGACGATTAACACGAGATTGGTTTCCGGGGTAATCAATTGCTACGTGGCTCTGGGTCTTAACGAAGAAGACCCTAGTGCCCGGGGACAGAACCTGGCCATCTACAAGGACACCTTCGAAGCCGTATTCCTTGAGGACACCGAGAGATTTTACACGAGGGAGAGCACAGACTTTCTCAGAAGTAATCCCGTCACCGAGTACATGATTAAGGCAGAGCAGCGTCTTCAAGAAGAACAGCGTCGGGTACAGGTGTATCTGCACGAGACGACGACCGAGAGGCTGGCCAAGACCTGCGACCGGGTACTGATCGAGAAGCATCTAGACATATTCCATGCCGAATTTCAGAAACTGTTAGACGGCGACAAGAACTCCGACCTAGGTCGAATGTACAGCCTCGTGGCGCGCATCCCCGACGGACTCTGCGAGCTGCGGCGGCTCCTCGAGCACCACATACACGCGCAGGGACTACACGCGCTCGACAAGTGCGGCGACACGGCACACACGGACCCGAAGGTTTACGTCTCGACGATTCTGGAAGTTCACAAGAAATACAACGCTCTCGTCCTGGTCGCGTTCAACAACGACTCCGGCTTCGTGGCGGCACTCGATAAGGCCTGCGGGAGATTCATAAACAGCAACGCGGTGACGAAAGCGGCGAACTCCTCGTCGAAGAGTCCGGAACTGTTGGCCAAGTACTGCGATTTGCTGCTCAAGAAGTCCAGCAAGAACCCCGAGGAGGCTGAACTTGAAGACACCTTGAATCAAGTCATGGTAGTATTCAAGTACATCGAAGATAAGGACGTCTTCCAGAAGTTCTACAGCAAGATGCTGGCGAAGAGACTGGTGCAGCACATGTCGGCCAGCGATGACGCAGAGGCGTCGATGATCTCAAAATTGAAACAAGCCTGCGGATTCGAGTACACAAGCAAACTGCAGAGAATGTTCCAAGACATTGGCGTGTCGAAGGACTTGAACGAGAACTTCAGGAAGCACATGGCAAACAGCTCGGAGCAGCCCCTGCACATAGACTTCAGCATCCAGGTGCTGTCGTCCGGCTCGTGGCCCTTCCAGCAGTCCACGTCCTTCCAGCTGCCCACGGAGCTGGAGCGCTCCGTGCACCGGTTCACCACGTTCTACTCGTCGCAACACTCCGGGCGCAAGCTGAACTGGCTCTACAACATGAGCAAGGGGGAACTCCTCACCAACTGCTTCAAGAACAGGTACACGCTGCAGGCGAGCACGTTCCAGATGGCGGTGCTGCTGCAGTACAACGACAACACCTCGTGGACGGTCCGCCAGCTGGAGCAGCACACCGGCATCAAAGGGGACTTCCTCATACAGGTACTTCAAATATTATTGAAGGCGAAACTGTTGGTGTGTCAAGAGGACGAGGCTGAGCTTGGCGAGAACTCGGTTGTCGATCTCTACTCGGGATACAAGAACAAAAAGCTCCGCGTGAATATAAACATACCGTTGAAGACGGAGCTTAAAGTTGAACAAGAGGCTACACACAAACACATCGAGGAGGACAGAAAGATGCTTATACAGGCCGCCATAGTACGGATAATGAAAACGCGCAAGACCCTAAAGCATCAGCACCTAGTGGTGGAAGTCCTCAACCAGTTGTCGTCACGGTTCAAGCCCAGAGTTCCTGTCATCAAGAAATGCATCGATATACTGATTGAGAAGGAATATTTAGAGCGCACCGAGGGAGAGAAGGACACTTACAGCTACCTGGCGTGA
Protein
MSTSNANRPQVPLRQKDFDQIWGDLQEGIEQVYKKQYMVKRRYIDLYTHVYNYCTSVHHHSAGSSSRVPQNNIGRVSYTGKKQTGQVQQGGAQLVGLELYKRLKEFLRIYLINLLQNGADLMGEDVLAFYTKQWEEYQFSSRVLNGVCSYLNRHWVKRECEEGRKGIFEIYQLALVTWRDNLFQCLNKQVTNAVLKLIERERNGETINTRLVSGVINCYVALGLNEEDPSARGQNLAIYKDTFEAVFLEDTERFYTRESTDFLRSNPVTEYMIKAEQRLQEEQRRVQVYLHETTTERLAKTCDRVLIEKHLDIFHAEFQKLLDGDKNSDLGRMYSLVARIPDGLCELRRLLEHHIHAQGLHALDKCGDTAHTDPKVYVSTILEVHKKYNALVLVAFNNDSGFVAALDKACGRFINSNAVTKAANSSSKSPELLAKYCDLLLKKSSKNPEEAELEDTLNQVMVVFKYIEDKDVFQKFYSKMLAKRLVQHMSASDDAEASMISKLKQACGFEYTSKLQRMFQDIGVSKDLNENFRKHMANSSEQPLHIDFSIQVLSSGSWPFQQSTSFQLPTELERSVHRFTTFYSSQHSGRKLNWLYNMSKGELLTNCFKNRYTLQASTFQMAVLLQYNDNTSWTVRQLEQHTGIKGDFLIQVLQILLKAKLLVCQEDEAELGENSVVDLYSGYKNKKLRVNINIPLKTELKVEQEATHKHIEEDRKMLIQAAIVRIMKTRKTLKHQHLVVEVLNQLSSRFKPRVPVIKKCIDILIEKEYLERTEGEKDTYSYLA

Summary

Description
Core component of multiple cullin-RING-based SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complexes, which mediate the ubiquitination of proteins involved in cell cycle progression, signal transduction and transcription. SCF complexes and ARIH1 collaborate in tandem to mediate ubiquitination of target proteins. In the SCF complex, serves as a rigid scaffold that organizes the SKP1-F-box protein and RBX1 subunits. May contribute to catalysis through positioning of the substrate and the ubiquitin-conjugating enzyme. The E3 ubiquitin-protein ligase activity of the complex is dependent on the neddylation of the cullin subunit and exchange of the substrate recognition component is mediated by TIP120A/CAND1. The functional specificity of the SCF complex depends on the F-box protein as substrate recognition component. SCF(BTRC) and SCF(FBXW11) direct ubiquitination of CTNNB1 and participate in Wnt signaling. SCF(FBXW11) directs ubiquitination of phosphorylated NFKBIA. SCF(BTRC) directs ubiquitination of NFKBIB, NFKBIE, ATF4, SMAD3, SMAD4, CDC25A, FBXO5 and probably NFKB2. SCF(BTRC) and/or SCF(FBXW11) direct ubiquitination of CEP68. SCF(SKP2) directs ubiquitination of phosphorylated CDKN1B/p27kip and is involved in regulation of G1/S transition. SCF(SKP2) directs ubiquitination of ORC1, CDT1, RBL2, ELF4, CDKN1A, RAG2, FOXO1A, and probably MYC and TAL1. SCF(FBXW7) directs ubiquitination of cyclin E, NOTCH1 released notch intracellular domain (NICD), and probably PSEN1. SCF(FBXW2) directs ubiquitination of GCM1. SCF(FBXO32) directs ubiquitination of MYOD1. SCF(FBXO7) directs ubiquitination of BIRC2 and DLGAP5. SCF(FBXO33) directs ubiquitination of YBX1. SCF(FBXO1) directs ubiquitination of BCL6 and DTL but does not seem to direct ubiquitination of TP53. SCF(BTRC) mediates the ubiquitination of NFKBIA at 'Lys-21' and 'Lys-22'; the degradation frees the associated NFKB1-RELA dimer to translocate into the nucleus and to activate transcription. SCF(CCNF) directs ubiquitination of CCP110. SCF(FBXL3) and SCF(FBXL21) direct ubiquitination of CRY1 and CRY2. SCF(FBXO9) directs ubiquitination of TTI1 and TELO2. SCF(FBXO10) directs ubiquitination of BCL2.
Subunit
Component of multiple SCF (SKP1-CUL1-F-box) E3 ubiquitin-protein ligase complexes formed of CUL1, SKP1, RBX1 and a variable F-box domain-containing protein as substrate-specific subunit (PubMed:10097128, PubMed:12140560, PubMed:16880526, PubMed:23452855, PubMed:23452856). Component of the SCF(FBXW11) complex containing FBXW11. Component of the SCF(SKP2) complex containing SKP2, in which it interacts directly with SKP1, SKP2 and RBX1. Component of the SCF(FBXW2) complex containing FBXW2. Component of the SCF(FBXO32) complex containing FBXO32. Component of the probable SCF(FBXO7) complex containing FBXO7. Component of the SCF(FBXO10) complex containing FBXO10. Component of the SCF(FBXO11) complex containing FBXO11. Component of the SCF(FBXO25) complex containing FBXO25. Component of the SCF(FBXO33) complex containing FBXO33. Component of the probable SCF(FBXO4) complex containing FBXO4. Component of the SCF(FBXO44) complex, composed of SKP1, CUL1 and FBXO44 (By similarity). Component of the SCF(BTRC) complex, composed of SKP1, CUL1 and BTRC (PubMed:10097128, PubMed:11735228). This complex binds phosphorylated NFKBIA (PubMed:10097128). Part of a SCF complex consisting of CUL1, RBX1, SKP1 and FBXO2. Component of a SCF(SKP2)-like complex containing CUL1, SKP1, TRIM21 and SKP2. Component of the SCF(FBXO17) complex, composed of SKP1, CUL1 and FBXO17. Component of the SCF(FBXO27) complex, composed of SKP1, CUL1 and FBXO27. Component of the SCF(CCNF) complex consisting of CUL1, RBX1, SKP1 and CCNF. Component of the SCF(FBXL3) complex composed of CUL1, SKP1, RBX1 and FBXL3. Component of the SCF(FBXL21) complex composed of CUL1, SKP1, RBX1 and FBXL21. Component of the SCF(FBXO9) composed of CUL1, SKP1, RBX1 and FBXO9. Component of the SCF(FBXW7) composed of CUL1, SKP1, RBX1 and FBXW7. Interacts with CHEK2; mediates CHEK2 ubiquitination and regulates its function. Part of a complex with TIP120A/CAND1 and RBX1. The unneddylated form interacts with TIP120A/CAND1 and the interaction mediates the exchange of the F-box substrate-specific subunit. Can self-associate (By similarity). Interacts with FBXW8 (PubMed:16880526). Interacts with RNF7 (By similarity). Interacts with CUL7; the interaction seems to be mediated by FBXW8 (PubMed:16880526). Interacts with TRIM21 (By similarity). Interacts with COPS2 (PubMed:11967155). Interacts with DCUN1D1 and UBE2M. Interacts with DCUN1D3. Interacts with DCUN1D4 (By similarity). Identified in a complex with RBX1 and GLMN (By similarity). Interacts with CEP68 as part of the SCF(FBXW11) complex; the interaction is probably mediated by FBXW11 and the complex also contains CDK5RAP2 and PCNT. Interacts (when neddylated) with ARIH1; leading to activate the E3 ligase activity of ARIH1. Interacts with COPS9. Interacts with UBXN1 (By similarity). Interacts with KAT7, probably as part of an SCF complex; the interaction mediates KAT7 ubiquitination (PubMed:23319590). Interacts with NOTCH2 (By similarity).
(Microbial infection) Interacts with murine cytomegalovirus M48.
Similarity
Belongs to the cullin family.
Keywords
Complete proteome   Host-virus interaction   Isopeptide bond   Methylation   Reference proteome   Ubl conjugation   Ubl conjugation pathway  
Feature
chain  Cullin-1
EMBL
GDQN01009272    JAT81782.1    KP236737    AKB96193.1    GAIX01004116    JAA88444.1    + More
BABH01017568    BABH01017569    NEVH01008263    PNF34276.1    KK853095    KDR11477.1    KK108116    QOIP01000005    EZA46900.1    RLU23105.1    GEZM01066094    JAV68190.1    KQ980903    KYN11634.1    KQ976432    KYM87443.1    KQ981905    KYN33371.1    ADTU01007481    ADTU01007482    KQ982116    KYQ59925.1    NNAY01001042    OXU25382.1    KQ978344    KYM94995.1    AK405319    BAM20669.1    KZ288204    PBC33198.1    KQ435714    KOX79207.1    KQ971352    EFA06626.2    GECZ01025319    JAS44450.1    KQ760382    OAD60702.1    GL437540    EFN70306.1    GALX01002297    JAB66169.1    GECU01027978    GECU01020219    GECU01019814    GECU01017020    JAS79728.1    JAS87487.1    JAS87892.1    JAS90686.1    GEBQ01025970    JAT14007.1    GECU01021780    GECU01013245    GECU01012871    GECU01006723    JAS85926.1    JAS94461.1    JAS94835.1    JAT00984.1    GECL01003236    JAP02888.1    GBGD01000581    JAC88308.1    GBYB01001556    GBYB01001557    JAG71323.1    JAG71324.1    KQ414615    KOC68754.1    GEDC01031605    JAS05693.1    ACPB03012360    ACPB03012361    GBHO01031551    GBHO01031550    GDHC01021776    JAG12053.1    JAG12054.1    JAP96852.1    KK119541    KFM75968.1    JH431446    GL732543    EFX81447.1    IAAA01017414    LAA03982.1    KQ459593    KPI96570.1    KU175339    AMJ52354.1    KB632263    ERL90945.1    GDIP01133989    JAL69725.1    APGK01052259    KB741211    ENN72810.1    GG666497    EEN62244.1    LRGB01000725    KZS16287.1    GANP01007784    JAB76684.1    GFAC01002519    JAT96669.1    GEFH01004343    JAP64238.1    GACK01002395    JAA62639.1    GDIQ01170712    JAK81013.1    GDIQ01192601    JAK59124.1    JH823233    EKC42188.1    GEDV01007358    JAP81199.1    GACK01005176    JAA59858.1    GFAA01000585    JAU02850.1    GBBK01002102    JAC22380.1    HADW01012249    HADX01004707    SBP13649.1    AFYH01150027    AFYH01150028    AFYH01150029    AFYH01150030    AFYH01150031    AFYH01150032    AFYH01150033    AFYH01150034    AFYH01150035    AFYH01150036    AERX01059382    JW863179    AFO95696.1    JH169891    EHB07795.1    AAKN02015291    AAKN02015292    AGCU01062837    AGCU01062838    AGCU01062839    AGCU01062840    AGTP01045192    AKHW03001210    KYO43149.1    MUZQ01000491    OWK50859.1    LSYS01006073    OPJ76091.1    AADN05000024    AKCR02000040    PKK24705.1    ABQF01008624    AABR07060512    BC161932    CH473959    AAI61932.1    EDM15554.1    AF083216    AF176910    AF136441    BC029260    GFFV01001244    JAV38701.1    AQIA01048658    AQIA01048659    AQIA01048660    AQIA01048661    AQIA01048662    AQIA01048663    ADFV01062343    ADFV01062344    ADFV01062345    AQIB01133891    AJFE02070375    AJFE02070376    AJFE02070377    AJFE02070378    AHZZ02023870    AAQR03087359    AAQR03087360    AAQR03087361    AAQR03087362    AAQR03087363    AAQR03087364    AAQR03087365   
Pfam
PF00888   Cullin        + More
PF10557   Cullin_Nedd8
Interpro
IPR036317   Cullin_homology_sf        + More
IPR016159   Cullin_repeat-like_dom_sf       
IPR016158   Cullin_homology       
IPR036390   WH_DNA-bd_sf       
IPR001373   Cullin_N       
IPR036388   WH-like_DNA-bd_sf       
IPR019559   Cullin_neddylation_domain       
IPR016157   Cullin_CS       
SUPFAM
SSF74788   SSF74788        + More
SSF46785   SSF46785       
SSF75632   SSF75632       
Gene 3D
PDB
1U6G     E-value=0,     Score=2806

Ontologies

Topology

Length:
784
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.0320900000000001
Exp number, first 60 AAs:
0.01098
Total prob of N-in:
0.00181
outside
1  -  784
 
 

Population Genetic Test Statistics

Pi
222.833195
Theta
164.991693
Tajima's D
1.790287
CLR
0.10489
CSRT
0.847757612119394
Interpretation
Uncertain
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