SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO00852
Pre Gene Modal
BGIBMGA009675
Annotation
PREDICTED:_4-coumarate--CoA_ligase_1-like_[Bombyx_mori]
Location in the cell
Mitochondrial   Reliability : 2.017
 

Sequence

CDS
ATGCTGAAGAATCCTAACTACGTGTACGGGTCCAGGGACATCACCGTTCCGCTGCACTTGAACTTCGGCCAGTTCATACTGGACAGAATGTGGATGCACAAAGACAGGATTGCACAGACAAATGGAGCCACAGGCGAAACTATGACCTACGGGGAAATTGTGCAGCAATCTATGAGATTCGCTATCTCGCTCTCTCGACTGGGCGTACGTAAAGGAGAGAGAATAGCGATACTATCTGAGAACAGACAAGAGTTTTGGACTGCTGTGATTGGTCCGGCATGCGTCGGCGCCATTGTCACTACTATAAGCACTAATTATGTTAAAGGCGAACTAAAACACGCAATGAACATATCAAAACCGAAATACGTGATAATATCGCCGAAAATGCACGAGAGGCACGTGCGAACGTTAAAATCGTTTGGATTCATTGAGAAAACGATAATTTTCGGCGACGCTGGGTCGAAAAGCGGTTTATATTCGTTCGACGAGTTAGTATTGGCCGGTGGCGGGTCTGAGATTGAAATCGAGAAGTTCACCGCGGTCAACGTGAATGGGCAGAACGATGTTTTGTTCATGGTCTATTCCTCTGGGACCACCGGCTTGCCAAAGGGAGTGCTGTTAACGCATTACAACGTTATAGCAGCGTGTTGTTTGCCTGTGACTTTCGACCCGAAGCAGCCGACTCTAAGCGTCGGTCCGTGGTACCACGTAATGGGTCTGGTCGGTAGCATCACTGGGATGGCTAGCGGTAGAATCGGGGTTTATCTGGACAAATTCGACGTTGAACTATACTTGAAGACAATCGAGAGGTATAAGGTGGTCCAGCTGACCGTGGTACCCCCGATCTTGGTCGCAGTCTGCAAGTCTACCAGCACTTTGGACCTGGGCTCTGTTAGACTGATATATTCGGGGGCCGCTCCCCTGCACAAGGACACGGCCAAGGCTGCCTTCGAAAAGTTCCCGAACCTTAGAGGAGTCTTCCAAGGTTACGGGTCGTCAGAGACGACCCTGGGCATCACCAGATACACGTACACCCAATTAGACATCGCGAAACCGGGCAGCGTGGGTCTGGCTGCACCCGGATGCGTGCTGAAGATAGTCGACATAAAAACCCGCCAGCCTCTTGGCCCTAATCAAACAGGAGAGATTTGCGCAAAGGGTGCGCTCCTTATGAAGGGCTACATCGGGAGGGCCAGGTCCGAAGACTTTGATGACGAGGACTTCTACAGGACTGGCGACGTAGGCTACTACGACGAGGACGGACACTTCTACATCTGTGATAGGATTAAGGAACTCATCAAATATAAAGGATATCAGGTGCCTCCAGCCGAACTGGAAGCGGTCCTGCTGCAGCACGAAGCAGTGAAAGACGCCGGTGTCGTCGGCATAGAGGACCGCGCGGCAGGAGAGGTGCCATTAGCCTTCGTTGTACGCCAACCAGGGAAGGAAGTCACTGAACAGGACCTCAAAGATTTCGTGGCACGGACGCTATCAAATCCGAAACACCTTCGGGGCGGAGTACGCTTCGTGACCGAAATACCGAAGAACCCCAGCGGGAAAATACTGAGGCAGGAGCTCAGGAAATTAGCTAAATCCCGAAAGAGCAAACTTTAA
Protein
MLKNPNYVYGSRDITVPLHLNFGQFILDRMWMHKDRIAQTNGATGETMTYGEIVQQSMRFAISLSRLGVRKGERIAILSENRQEFWTAVIGPACVGAIVTTISTNYVKGELKHAMNISKPKYVIISPKMHERHVRTLKSFGFIEKTIIFGDAGSKSGLYSFDELVLAGGGSEIEIEKFTAVNVNGQNDVLFMVYSSGTTGLPKGVLLTHYNVIAACCLPVTFDPKQPTLSVGPWYHVMGLVGSITGMASGRIGVYLDKFDVELYLKTIERYKVVQLTVVPPILVAVCKSTSTLDLGSVRLIYSGAAPLHKDTAKAAFEKFPNLRGVFQGYGSSETTLGITRYTYTQLDIAKPGSVGLAAPGCVLKIVDIKTRQPLGPNQTGEICAKGALLMKGYIGRARSEDFDDEDFYRTGDVGYYDEDGHFYICDRIKELIKYKGYQVPPAELEAVLLQHEAVKDAGVVGIEDRAAGEVPLAFVVRQPGKEVTEQDLKDFVARTLSNPKHLRGGVRFVTEIPKNPSGKILRQELRKLAKSRKSKL

Summary

EMBL
BABH01017566    BABH01017567    NWSH01000380    PCG76826.1    KQ460890    KPJ10986.1    + More
ODYU01003402    SOQ42112.1    KPJ10987.1    KQ459593    KPI96565.1    KPJ10988.1    KPI96566.1    AK403861    BAM19986.1    AGBW02008380    OWR53544.1    OWR53543.1    KPI96571.1    KPJ10990.1    KPJ10989.1    KPI96568.1    BABH01017564    KQ461181    KPJ07625.1    JN127350    AET05796.1    ODYU01004352    SOQ44136.1    BABH01007891    KQ459604    KPI92264.1    NWSH01003686    PCG65919.1    KQ459597    KPI94913.1    NWSH01001030    PCG73036.1    ODYU01009511    SOQ54004.1    AGBW02014874    OWR40957.1    PCG73033.1    KZ149903    PZC78438.1    AB251887    BAQ25864.1    NWSH01003607    PCG66062.1    KQ460045    KPJ18230.1    KPI92263.1    AGBW02012531    OWR44889.1    ODYU01000123    SOQ34366.1    GFDF01002635    JAV11449.1    GL438029    EFN69681.1    GFDF01002634    JAV11450.1    ATLV01021336    KE525316    KFB46347.1    GFDF01002419    JAV11665.1    GGFK01007847    MBW41168.1    GFDF01002420    JAV11664.1    ADMH02001214    ETN63630.1    AB251886    BAQ25863.1    GGFK01007825    MBW41146.1    AB479114    BAI66602.1    JTDY01002474    KOB71343.1    KQ977649    KYN00718.1    GANO01000766    JAB59105.1    AAAB01008820    EDO64449.2    APCN01002221    GGFJ01003984    MBW53125.1    KQ434809    KZC06219.1    LBMM01003413    KMQ93562.1    AXCM01006981    ADMH02001657    ETN61532.1    ADTU01018928    GGFM01004391    MBW25142.1    GFDL01007475    JAV27570.1    AJVK01015100    AJVK01015101    AJVK01015102    AJVK01015103    APCN01002222    GBXI01007236    JAD07056.1    JTDY01000482    KOB76976.1    ATLV01003206    KE524124    KFB34946.1    JXUM01143620    KQ569633    KXJ68569.1    KZ288194    PBC33943.1    GFDG01002539    JAV16260.1    GFDG01002537    JAV16262.1    JXUM01130360    KQ567568    KXJ69363.1    EGK96337.1    DS231865    EDS40370.1    CH477187    EAT48870.1   
Pfam
PF00501   AMP-binding        + More
PF13193   AMP-binding_C
Interpro
IPR020845   AMP-binding_CS        + More
IPR042099   AMP-dep_Synthh-like_sf       
IPR000873   AMP-dep_Synth/Lig       
IPR025110   AMP-bd_C       
IPR027380   Luciferase-like_N_sf       
Gene 3D
PDB
2D1S     E-value=7.66234e-92,     Score=861

Ontologies

Topology

Length:
537
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
12.09553
Exp number, first 60 AAs:
0.09768
Total prob of N-in:
0.28144
outside
1  -  537
 
 

Population Genetic Test Statistics

Pi
301.129104
Theta
169.945384
Tajima's D
3.109858
CLR
0.016898
CSRT
0.983650817459127
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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