Gene

KWMTBOMO00852

Pre Gene Modal

BGIBMGA009675

Annotation

PREDICTED:_4-coumarate--CoA_ligase_1-like_[Bombyx_mori]

Location

Bomo_Chr2(-):4405466-4420241      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 2.017

CDS

ATGCTGAAGAATCCTAACTACGTGTACGGGTCCAGGGACATCACCGTTCCGCTGCACTTGAACTTCGGCCAGTTCATACTGGACAGAATGTGGATGCACAAAGACAGGATTGCACAGACAAATGGAGCCACAGGCGAAACTATGACCTACGGGGAAATTGTGCAGCAATCTATGAGATTCGCTATCTCGCTCTCTCGACTGGGCGTACGTAAAGGAGAGAGAATAGCGATACTATCTGAGAACAGACAAGAGTTTTGGACTGCTGTGATTGGTCCGGCATGCGTCGGCGCCATTGTCACTACTATAAGCACTAATTATGTTAAAGGCGAACTAAAACACGCAATGAACATATCAAAACCGAAATACGTGATAATATCGCCGAAAATGCACGAGAGGCACGTGCGAACGTTAAAATCGTTTGGATTCATTGAGAAAACGATAATTTTCGGCGACGCTGGGTCGAAAAGCGGTTTATATTCGTTCGACGAGTTAGTATTGGCCGGTGGCGGGTCTGAGATTGAAATCGAGAAGTTCACCGCGGTCAACGTGAATGGGCAGAACGATGTTTTGTTCATGGTCTATTCCTCTGGGACCACCGGCTTGCCAAAGGGAGTGCTGTTAACGCATTACAACGTTATAGCAGCGTGTTGTTTGCCTGTGACTTTCGACCCGAAGCAGCCGACTCTAAGCGTCGGTCCGTGGTACCACGTAATGGGTCTGGTCGGTAGCATCACTGGGATGGCTAGCGGTAGAATCGGGGTTTATCTGGACAAATTCGACGTTGAACTATACTTGAAGACAATCGAGAGGTATAAGGTGGTCCAGCTGACCGTGGTACCCCCGATCTTGGTCGCAGTCTGCAAGTCTACCAGCACTTTGGACCTGGGCTCTGTTAGACTGATATATTCGGGGGCCGCTCCCCTGCACAAGGACACGGCCAAGGCTGCCTTCGAAAAGTTCCCGAACCTTAGAGGAGTCTTCCAAGGTTACGGGTCGTCAGAGACGACCCTGGGCATCACCAGATACACGTACACCCAATTAGACATCGCGAAACCGGGCAGCGTGGGTCTGGCTGCACCCGGATGCGTGCTGAAGATAGTCGACATAAAAACCCGCCAGCCTCTTGGCCCTAATCAAACAGGAGAGATTTGCGCAAAGGGTGCGCTCCTTATGAAGGGCTACATCGGGAGGGCCAGGTCCGAAGACTTTGATGACGAGGACTTCTACAGGACTGGCGACGTAGGCTACTACGACGAGGACGGACACTTCTACATCTGTGATAGGATTAAGGAACTCATCAAATATAAAGGATATCAGGTGCCTCCAGCCGAACTGGAAGCGGTCCTGCTGCAGCACGAAGCAGTGAAAGACGCCGGTGTCGTCGGCATAGAGGACCGCGCGGCAGGAGAGGTGCCATTAGCCTTCGTTGTACGCCAACCAGGGAAGGAAGTCACTGAACAGGACCTCAAAGATTTCGTGGCACGGACGCTATCAAATCCGAAACACCTTCGGGGCGGAGTACGCTTCGTGACCGAAATACCGAAGAACCCCAGCGGGAAAATACTGAGGCAGGAGCTCAGGAAATTAGCTAAATCCCGAAAGAGCAAACTTTAA

Protein

MLKNPNYVYGSRDITVPLHLNFGQFILDRMWMHKDRIAQTNGATGETMTYGEIVQQSMRFAISLSRLGVRKGERIAILSENRQEFWTAVIGPACVGAIVTTISTNYVKGELKHAMNISKPKYVIISPKMHERHVRTLKSFGFIEKTIIFGDAGSKSGLYSFDELVLAGGGSEIEIEKFTAVNVNGQNDVLFMVYSSGTTGLPKGVLLTHYNVIAACCLPVTFDPKQPTLSVGPWYHVMGLVGSITGMASGRIGVYLDKFDVELYLKTIERYKVVQLTVVPPILVAVCKSTSTLDLGSVRLIYSGAAPLHKDTAKAAFEKFPNLRGVFQGYGSSETTLGITRYTYTQLDIAKPGSVGLAAPGCVLKIVDIKTRQPLGPNQTGEICAKGALLMKGYIGRARSEDFDDEDFYRTGDVGYYDEDGHFYICDRIKELIKYKGYQVPPAELEAVLLQHEAVKDAGVVGIEDRAAGEVPLAFVVRQPGKEVTEQDLKDFVARTLSNPKHLRGGVRFVTEIPKNPSGKILRQELRKLAKSRKSKL

Uniprot

H9JJH4   A0A2A4JYH7   A0A194R547   A0A2H1VNT1   A0A194QZV5   A0A194PZH5   + More
A0A194QZM0   A0A194PT23   I4DPZ6   A0A212FII9   A0A212FIH9   A0A194PT28   A0A194R162   A0A194R0D8   A0A194PUB9   H9JJH5   A0A194QRL9   G8GE17   A0A2H1VTP5   H9J2F6   A0A194PHR8   A0A2A4J232   A0A194PPL0   A0A2A4JMM7   A0A2H1WNI5   A0A212EHJ8   A0A2A4JNM0   A0A2W1BTP3   A0A0C6DRW5   A0A2A4J3S6   A0A194RLN8   A0A194PGU6   A0A212ETT6   A0A2H1V0T1   A0A1L8DYF7   E2AA43   A0A1L8DYB2   A0A084W803   A0A1L8DZF9   A0A182F8R8   A0A2M4AKM3   A0A182SCF1   A0A182TMS7   A0A1L8DYZ5   A0A182IVA5   W5JL40   A0A0C6E621   A0A182FB05   A0A2M4AK32   A0A182PST3   D2KV87   A0A182YEP9   A0A182SUG3   A0A182T271   A0A182R867   A0A182WW22   A0A0L7L784   A0A182YH13   A0A1I8JVD6   A0A195CJ24   A0A182V899   U5EXU9   A0A182RE74   A7US60   A0A182HJY0   A0A2M4BJ94   A0A154P2Q1   A0A0J7KT57   A0A182MJF5   A0A182PUM4   A0A182KX68   W5JAQ2   A0A1I8JVX6   A0A158NKN5   A0A2M3Z9G4   A0A1Q3FIY4   A0A182YM72   A0A088A0E6   A0A182VS70   A0A1B0DFB0   A0A1I8JV25   A0A1I8JTC1   A0A240PK82   A0A0A1X815   A0A0L7LP26   A0A084VAF2   A0A182G4E6   A0A2A3EQ70   A0A1L8EBZ5   A0A182R329   A0A1L8ECA8   A0A182HDU2   A0A1A9XI15   F5HJ76   A0A1I8PLP9   B0W9Q1   Q17Q46   A0A1A9VQZ3   A0A182YM73  

Pubmed

19121390    26354079    22651552    22118469    28756777    20798317    + More
24438588    20920257    23761445    20004235    25244985    26227816    12364791    14747013    17210077    20966253    21347285    25830018    26483478    17510324   

EMBL

BABH01017566    BABH01017567    NWSH01000380    PCG76826.1    KQ460890    KPJ10986.1    + More
ODYU01003402    SOQ42112.1    KPJ10987.1    KQ459593    KPI96565.1    KPJ10988.1    KPI96566.1    AK403861    BAM19986.1    AGBW02008380    OWR53544.1    OWR53543.1    KPI96571.1    KPJ10990.1    KPJ10989.1    KPI96568.1    BABH01017564    KQ461181    KPJ07625.1    JN127350    AET05796.1    ODYU01004352    SOQ44136.1    BABH01007891    KQ459604    KPI92264.1    NWSH01003686    PCG65919.1    KQ459597    KPI94913.1    NWSH01001030    PCG73036.1    ODYU01009511    SOQ54004.1    AGBW02014874    OWR40957.1    PCG73033.1    KZ149903    PZC78438.1    AB251887    BAQ25864.1    NWSH01003607    PCG66062.1    KQ460045    KPJ18230.1    KPI92263.1    AGBW02012531    OWR44889.1    ODYU01000123    SOQ34366.1    GFDF01002635    JAV11449.1    GL438029    EFN69681.1    GFDF01002634    JAV11450.1    ATLV01021336    KE525316    KFB46347.1    GFDF01002419    JAV11665.1    GGFK01007847    MBW41168.1    GFDF01002420    JAV11664.1    ADMH02001214    ETN63630.1    AB251886    BAQ25863.1    GGFK01007825    MBW41146.1    AB479114    BAI66602.1    JTDY01002474    KOB71343.1    KQ977649    KYN00718.1    GANO01000766    JAB59105.1    AAAB01008820    EDO64449.2    APCN01002221    GGFJ01003984    MBW53125.1    KQ434809    KZC06219.1    LBMM01003413    KMQ93562.1    AXCM01006981    ADMH02001657    ETN61532.1    ADTU01018928    GGFM01004391    MBW25142.1    GFDL01007475    JAV27570.1    AJVK01015100    AJVK01015101    AJVK01015102    AJVK01015103    APCN01002222    GBXI01007236    JAD07056.1    JTDY01000482    KOB76976.1    ATLV01003206    KE524124    KFB34946.1    JXUM01143620    KQ569633    KXJ68569.1    KZ288194    PBC33943.1    GFDG01002539    JAV16260.1    GFDG01002537    JAV16262.1    JXUM01130360    KQ567568    KXJ69363.1    EGK96337.1    DS231865    EDS40370.1    CH477187    EAT48870.1   

Proteomes

UP000005204    UP000218220    UP000053240    UP000053268    UP000007151    UP000000311    + More
UP000030765    UP000069272    UP000075901    UP000075902    UP000075880    UP000000673    UP000075885    UP000076408    UP000075900    UP000076407    UP000037510    UP000075903    UP000078542    UP000007062    UP000075840    UP000076502    UP000036403    UP000075883    UP000075882    UP000005205    UP000005203    UP000075920    UP000092462    UP000069940    UP000249989    UP000242457    UP000092443    UP000095300    UP000002320    UP000008820    UP000078200   

PRIDE

H9JJH4    H9JJH5    G8GE17    H9J2F6   

Pfam

PF00501   AMP-binding        + More
PF13193   AMP-binding_C

Interpro

IPR020845   AMP-binding_CS        + More
IPR042099   AMP-dep_Synthh-like_sf       
IPR000873   AMP-dep_Synth/Lig       
IPR025110   AMP-bd_C       
IPR027380   Luciferase-like_N_sf       

Gene 3D

3.40.50.12780     4.10.8.10    

ProteinModelPortal

H9JJH4   A0A2A4JYH7   A0A194R547   A0A2H1VNT1   A0A194QZV5   A0A194PZH5   + More
A0A194QZM0   A0A194PT23   I4DPZ6   A0A212FII9   A0A212FIH9   A0A194PT28   A0A194R162   A0A194R0D8   A0A194PUB9   H9JJH5   A0A194QRL9   G8GE17   A0A2H1VTP5   H9J2F6   A0A194PHR8   A0A2A4J232   A0A194PPL0   A0A2A4JMM7   A0A2H1WNI5   A0A212EHJ8   A0A2A4JNM0   A0A2W1BTP3   A0A0C6DRW5   A0A2A4J3S6   A0A194RLN8   A0A194PGU6   A0A212ETT6   A0A2H1V0T1   A0A1L8DYF7   E2AA43   A0A1L8DYB2   A0A084W803   A0A1L8DZF9   A0A182F8R8   A0A2M4AKM3   A0A182SCF1   A0A182TMS7   A0A1L8DYZ5   A0A182IVA5   W5JL40   A0A0C6E621   A0A182FB05   A0A2M4AK32   A0A182PST3   D2KV87   A0A182YEP9   A0A182SUG3   A0A182T271   A0A182R867   A0A182WW22   A0A0L7L784   A0A182YH13   A0A1I8JVD6   A0A195CJ24   A0A182V899   U5EXU9   A0A182RE74   A7US60   A0A182HJY0   A0A2M4BJ94   A0A154P2Q1   A0A0J7KT57   A0A182MJF5   A0A182PUM4   A0A182KX68   W5JAQ2   A0A1I8JVX6   A0A158NKN5   A0A2M3Z9G4   A0A1Q3FIY4   A0A182YM72   A0A088A0E6   A0A182VS70   A0A1B0DFB0   A0A1I8JV25   A0A1I8JTC1   A0A240PK82   A0A0A1X815   A0A0L7LP26   A0A084VAF2   A0A182G4E6   A0A2A3EQ70   A0A1L8EBZ5   A0A182R329   A0A1L8ECA8   A0A182HDU2   A0A1A9XI15   F5HJ76   A0A1I8PLP9   B0W9Q1   Q17Q46   A0A1A9VQZ3   A0A182YM73  

PDB

2D1S     E-value=7.66234e-92,     Score=861

KEGG

101735849    no KO assigned | (RefSeq) 4-coumarate--CoA ligase 1-like

GO

GO:0003824   GO:0004497   GO:0016874   GO:0016021   GO:0008152   GO:0019674   GO:0006741   GO:0005737   GO:0006396   GO:0000166   GO:0004887   GO:0003707  

Length:

537

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

12.09553

Exp number, first 60 AAs:

0.09768

Total prob of N-in:

0.28144

outside

1  -  537

 

 

Pi

301.129104

Theta

169.945384

Tajima's D

3.109858

CLR

0.016898

CSRT

0.983650817459127

Interpretation

Uncertain