Gene

KWMTBOMO00851

Pre Gene Modal

BGIBMGA009676

Annotation

PREDICTED:_4-coumarate--CoA_ligase_1-like_[Bombyx_mori]

Location

Bomo_Chr2(-):4394663-4401201      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 2.081

CDS

ATGCTGAAGATACCTAATTACGTGTACGGGCCCAAGGATACCACAATCCCTCTAGACGTTAACTTCGGCCAGTTCATACTGGGAAGAATGTGGATGTACAAAGACAGGATTGCACAGACGAACGGAGCCACAGGCGAAAGTTTTACTTACAAAGAAATCGTCCAGCAATCTATGAAATTCGCCGTCTCGCTTACTCGGCTTGGCGTGCGTAAGGGAGAGACGATAGCTCTATTTTCTGAGAACAGAAAAGAGTATTGGCCTGCCGTTATTGGGACGGTGTGTGTTGGCGCCATTTGTACTACTATAAGTAGTATGTATGCTGAAGAAGAAATAAAACACGTATTGCACATTTCGAAGCCGAAATATTTAATAGTTTCGCCTAAAATGTACGAAGCGCACGAGGCGACGTTGAAGTTAATCGATTCTATAGAGACAACCATTTTATTTGGCGACGATGCGAAAAGACCCGCTCTATATTATTTCAACGATTTAGTTGCGAGTGTCGGCTCAGATATCGATGTTGAGAATTTCATCGCAGCCGACGTTGATGTGCACGACGTTTTGTTCATACTGTATTCTTCGGGAACCACCGGCATGCCGAAAGGAGTGACATTAACTCATTTAAACGCCATAGCTGTTTGTTGTATGTGA

Protein

MLKIPNYVYGPKDTTIPLDVNFGQFILGRMWMYKDRIAQTNGATGESFTYKEIVQQSMKFAVSLTRLGVRKGETIALFSENRKEYWPAVIGTVCVGAICTTISSMYAEEEIKHVLHISKPKYLIVSPKMYEAHEATLKLIDSIETTILFGDDAKRPALYYFNDLVASVGSDIDVENFIAADVDVHDVLFILYSSGTTGMPKGVTLTHLNAIAVCCM

Uniprot

H9JJH4   A0A2A4JYH7   A0A2H1WXP8   A0A2H1VNT1   A0A194QZV5   A0A194R547   + More
A0A194PZH5   A0A194R0D8   A0A194PTD5   A0A212FII9   A0A194PT23   A0A194QZM0   I4DPZ6   A0A212FIH9   A0A194R162   A0A194PUB9   A0A0L7L8I0   A0A194PUC3   A0A194PT28   A0A2A4J3S6   A0A2A4JNM0   A0A212ETT6   A0A2H1V0T1   G8GE17   A0A0L7L784   A0A2H1VTP5   H9JXM0   A0A2A4J232   A0A2H1WNI5   A0A0L7LP26   A0A0L7L6L8   H9J2F6   A0A194QRL9   A0A194RLN8   A0A194PGU6   A0A2H1VKC8   A0A0L7L765   A0A2H1V0C4   A0A2H1WJN9   A0A194PHR8   A0A2A4JMM7   A0A2W1BTP3   A0A2P8YFR7   A0A212EHJ8   A0A194PPL0   H9J5Y1   A0A0L7LH10   A0A0N0BDE6   Q17Q46   A0A0L7R1M1   A0A1S4EV05   A0A088A0E6   A0A2A3EQ70   A0A154P2Q1   K7J1G6   A0A195FCB7   A0A2C9GG62   A0A3M1BMG2   A0A158NKN5   A0A0M8K9R9   A0A0P6YM72   J9HHI9   A0A232FI37   A0A151WRK1   B3RJA0   A0A1B6G7E7   A0A1S3HPH1   A0A195DG47   A0A182PUM4   A0A369RUA1   A0A195CJ24   A0A1B6GNG2   A0A2B4R799   A0A1S3ID49   A0A182G4E6   Q7PSL0   B3RXG7   A0A182YM72   A0A1L8DZF9   A0A182R867   A0A369RY28   A0A182SCF1   A0A1Q3FIY4   A0A2J7QLS2   A0A2P8Y7W7   A0A182WW22   A0A2C9KWG2   A0A1S3J1W1   A0A182QR12   A0A1L8DYZ5   A0A1S3J1C6   A0A182V899   A0A2J7QLS4   A0A182FB05   A0A182TRT7   A0A182TMS7   F5HJ76  

Pubmed

19121390    26354079    22118469    22651552    26227816    28756777    + More
29403074    17510324    20075255    21347285    28648823    18719581    30042472    26483478    12364791    14747013    17210077    25244985    15562597   

EMBL

BABH01017566    BABH01017567    NWSH01000380    PCG76826.1    ODYU01011856    SOQ57839.1    + More
ODYU01003402    SOQ42112.1    KQ460890    KPJ10987.1    KPJ10986.1    KQ459593    KPI96565.1    KPJ10989.1    KPI96567.1    AGBW02008380    OWR53544.1    KPI96566.1    KPJ10988.1    AK403861    BAM19986.1    OWR53543.1    KPJ10990.1    KPI96568.1    JTDY01002337    KOB71639.1    KPI96573.1    KPI96571.1    NWSH01003607    PCG66062.1    NWSH01001030    PCG73033.1    AGBW02012531    OWR44889.1    ODYU01000123    SOQ34366.1    JN127350    AET05796.1    JTDY01002474    KOB71343.1    ODYU01004352    SOQ44136.1    BABH01044598    NWSH01003686    PCG65919.1    ODYU01009511    SOQ54004.1    JTDY01000482    KOB76976.1    JTDY01002678    KOB70956.1    BABH01007891    KQ461181    KPJ07625.1    KQ460045    KPJ18230.1    KQ459604    KPI92263.1    ODYU01002875    SOQ40902.1    KOB71342.1    ODYU01000100    SOQ34295.1    ODYU01009054    SOQ53186.1    KPI92264.1    PCG73036.1    KZ149903    PZC78438.1    PYGN01000629    PSN43108.1    AGBW02014874    OWR40957.1    KQ459597    KPI94913.1    BABH01029976    JTDY01001219    KOB74496.1    KQ435863    KOX70354.1    CH477187    EAT48870.1    KQ414667    KOC64742.1    KZ288194    PBC33943.1    KQ434809    KZC06219.1    KQ981693    KYN37847.1    RFKN01000393    RME09731.1    ADTU01018928    BBZA01000298    GAP64655.1    LGKN01000009    KPL86356.1    EJY57324.1    NNAY01000193    OXU30119.1    KQ982805    KYQ50532.1    DS985241    EDV29294.1    GECZ01026909    GECZ01011404    JAS42860.1    JAS58365.1    KQ980886    KYN11865.1    NOWV01000186    RDD38267.1    KQ977649    KYN00718.1    GECZ01005818    JAS63951.1    LSMT01000817    PFX14224.1    JXUM01143620    KQ569633    KXJ68569.1    AAAB01008820    EAA05417.6    DS985245    EDV24421.1    GFDF01002419    JAV11665.1    NOWV01000134    RDD39450.1    GFDL01007475    JAV27570.1    NEVH01013241    PNF29541.1    PYGN01000822    PSN40352.1    AXCN02000092    GFDF01002420    JAV11664.1    PNF29544.1    EGK96337.1   

Proteomes

UP000005204    UP000218220    UP000053240    UP000053268    UP000007151    UP000037510    + More
UP000245037    UP000053105    UP000008820    UP000053825    UP000005203    UP000242457    UP000076502    UP000002358    UP000078541    UP000005205    UP000037784    UP000050502    UP000215335    UP000075809    UP000009022    UP000085678    UP000078492    UP000075885    UP000253843    UP000078542    UP000225706    UP000069940    UP000249989    UP000007062    UP000076408    UP000075900    UP000075901    UP000235965    UP000076407    UP000076420    UP000075886    UP000075903    UP000069272    UP000075902   

PRIDE

H9JJH4    G8GE17    H9JXM0    H9J2F6    H9J5Y1   

Pfam

PF00501   AMP-binding        + More
PF13193   AMP-binding_C

Interpro

IPR020845   AMP-binding_CS        + More
IPR042099   AMP-dep_Synthh-like_sf       
IPR000873   AMP-dep_Synth/Lig       
IPR025110   AMP-bd_C       
IPR036691   Endo/exonu/phosph_ase_sf       

SUPFAM

SSF56219   SSF56219       

Gene 3D

3.40.50.12780     3.60.10.10    

ProteinModelPortal

H9JJH4   A0A2A4JYH7   A0A2H1WXP8   A0A2H1VNT1   A0A194QZV5   A0A194R547   + More
A0A194PZH5   A0A194R0D8   A0A194PTD5   A0A212FII9   A0A194PT23   A0A194QZM0   I4DPZ6   A0A212FIH9   A0A194R162   A0A194PUB9   A0A0L7L8I0   A0A194PUC3   A0A194PT28   A0A2A4J3S6   A0A2A4JNM0   A0A212ETT6   A0A2H1V0T1   G8GE17   A0A0L7L784   A0A2H1VTP5   H9JXM0   A0A2A4J232   A0A2H1WNI5   A0A0L7LP26   A0A0L7L6L8   H9J2F6   A0A194QRL9   A0A194RLN8   A0A194PGU6   A0A2H1VKC8   A0A0L7L765   A0A2H1V0C4   A0A2H1WJN9   A0A194PHR8   A0A2A4JMM7   A0A2W1BTP3   A0A2P8YFR7   A0A212EHJ8   A0A194PPL0   H9J5Y1   A0A0L7LH10   A0A0N0BDE6   Q17Q46   A0A0L7R1M1   A0A1S4EV05   A0A088A0E6   A0A2A3EQ70   A0A154P2Q1   K7J1G6   A0A195FCB7   A0A2C9GG62   A0A3M1BMG2   A0A158NKN5   A0A0M8K9R9   A0A0P6YM72   J9HHI9   A0A232FI37   A0A151WRK1   B3RJA0   A0A1B6G7E7   A0A1S3HPH1   A0A195DG47   A0A182PUM4   A0A369RUA1   A0A195CJ24   A0A1B6GNG2   A0A2B4R799   A0A1S3ID49   A0A182G4E6   Q7PSL0   B3RXG7   A0A182YM72   A0A1L8DZF9   A0A182R867   A0A369RY28   A0A182SCF1   A0A1Q3FIY4   A0A2J7QLS2   A0A2P8Y7W7   A0A182WW22   A0A2C9KWG2   A0A1S3J1W1   A0A182QR12   A0A1L8DYZ5   A0A1S3J1C6   A0A182V899   A0A2J7QLS4   A0A182FB05   A0A182TRT7   A0A182TMS7   F5HJ76  

PDB

3NI2     E-value=1.12181e-14,     Score=191

KEGG

101746546    no KO assigned | (RefSeq) 4-coumarate--CoA ligase 1-like

GO

GO:0003824   GO:0004497   GO:0016874   GO:0016021   GO:0008152   GO:0019674   GO:0006741   GO:0005737   GO:0006396   GO:0000166   GO:0004887   GO:0003707  

Length:

216

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

9.24381

Exp number, first 60 AAs:

0.59449

Total prob of N-in:

0.24875

outside

1  -  216

 

 

Pi

227.199412

Theta

158.399162

Tajima's D

1.801236

CLR

0.101986

CSRT

0.849357532123394

Interpretation

Uncertain