SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO00845
Annotation
PREDICTED:_mucin-2-like_[Amyelois_transitella]
Location in the cell
Nuclear   Reliability : 2.232
 

Sequence

CDS
ATGGTTGGGTGCATTAAACCAGAACCCGGTGAGCCCCCAGCAGCTGCAGATGACGCTAAAACAAAAGCAAAACTGATCCTTACCATCGACCCGACTCTTTACGTTCACATAAAAAGCGTCAATACATCGAAAGAATTGTGGGACAAATTAAAGATGCTGTTTGATGACTCTGGATACACAAGAAAAATCAACCTGTTGAGGAATCTGATATCTATTAGATTAGAAAATTGCACATCGATGACGTCGTATGTAACGCAAATTGTTGAAGCGGGTCAGAAGCTACAAGGTACGGGTTTTAACATAAATGACGAATGGATCGGTTCTATCATGTTGGCTGGATTATCTGAAAAGTATATGCCTATGATAATGGCGATCGAACATTCGGGCATGATTATTACAACGGACGCCATTAAAGGGAAGTTGATGGACATGGAACCGGAAGATAGTGATGTGAATAATGCGTTTGCAAGTTTCAAGAATAAATCGATTCATCATTCAAAAAAGGTGAAGTCTATGCGATCTATGGTCGGTAAAGATGGTGGAAATCAAAGTACACAAGTGTCGCCATCTGTCAAGGATAAACCAAACGTCAAATGTTATGGTTGTAAACAATATGGCCACTATCGCAATCAGTGTACAAATACAAATATGCAAAAATCTTGGAAGATTTCGCAAGATTCACAAAGTAAAACTAAACCAACTAATGCATTCAGTGCTGTATTCTTTAATGGAACATTTGATAAGGACGATTGTTGGCCACAAATTTATTGTCAGTGA
Protein
MVGCIKPEPGEPPAAADDAKTKAKLILTIDPTLYVHIKSVNTSKELWDKLKMLFDDSGYTRKINLLRNLISIRLENCTSMTSYVTQIVEAGQKLQGTGFNINDEWIGSIMLAGLSEKYMPMIMAIEHSGMIITTDAIKGKLMDMEPEDSDVNNAFASFKNKSIHHSKKVKSMRSMVGKDGGNQSTQVSPSVKDKPNVKCYGCKQYGHYRNQCTNTNMQKSWKISQDSQSKTKPTNAFSAVFFNGTFDKDDCWPQIYCQ

Summary

EMBL
GDQN01004560    JAT86494.1    AGBW02009826    OWR49812.1    ODYU01013273    SOQ59980.1    + More
ODYU01011515    SOQ57290.1    GEZM01011858    GEZM01011854    JAV93389.1    GEZM01011856    JAV93393.1    GEZM01011857    JAV93390.1    GBHO01007564    JAG36040.1    LBMM01004924    KMQ91985.1    BABH01019436    LBMM01012652    KMQ86076.1    KQ459875    KPJ19636.1    GDQN01004734    JAT86320.1    KQ460297    KPJ16236.1    JXUM01099713    KQ564513    KXJ72145.1    GANO01000660    JAB59211.1    GANO01000659    JAB59212.1    ODYU01012902    SOQ59440.1    QOIP01000004    RLU23300.1    GBHO01016596    JAG27008.1    GBYB01005396    JAG75163.1    QOIP01000011    RLU16434.1    LBMM01020445    KMQ83285.1    GEZM01045162    JAV77889.1    GBHO01003629    JAG39975.1    NWSH01000816    PCG74073.1    GFTR01004319    JAW12107.1    GEDC01002834    JAS34464.1    GFTR01008662    JAW07764.1    GBHO01011901    JAG31703.1    NWSH01002292    PCG68657.1    PCG68658.1    GBHO01003630    JAG39974.1    GANO01000510    JAB59361.1    LBMM01010768    KMQ87255.1    GEHC01000991    JAV46654.1    LBMM01010958    KMQ87117.1    GEHC01000990    JAV46655.1    GEHC01000989    JAV46656.1    GEHC01000988    JAV46657.1    LBMM01010791    KMQ87231.1    GBHO01001742    JAG41862.1    LBMM01010129    KMQ87655.1    GBHO01001741    JAG41863.1    AAZX01000498    AAZX01000501    AAZX01006002    AAZX01012499    AAZX01024922    AAZX01025632    NWSH01001433    PCG71241.1    GBHO01007463    JAG36141.1    KZ149913    PZC78057.1    LBMM01019465    KMQ83527.1    LBMM01013295    KMQ85718.1    LBMM01009660    KMQ87962.1    AAZX01001646    AAZX01017431    AAZX01026129    AAZX01026131    GBHO01026223    JAG17381.1    GAKP01015352    JAC43600.1    GBHO01026221    JAG17383.1    GBHO01033235    JAG10369.1    GBHO01033237    JAG10367.1    LBMM01011462    KMQ86820.1    GBHO01020706    JAG22898.1    KZ150068    PZC74114.1    JTDY01010240    KOB59525.1    JTDY01000892    KOB75534.1    GBXI01011094    JAD03198.1    KL367553    KFD64618.1    GEZM01044588    JAV78134.1    KL367628    KFD61291.1    NWSH01000234    PCG78150.1    JYDT01000637    KRY80274.1    GEHC01000867    JAV46778.1    GEHC01000868    JAV46777.1    JYDJ01001086    KRX32699.1    JYDV01000046    KRZ38404.1    JYDJ01000877    KRX33198.1    JYDQ01000379    KRY07987.1    JYDL01000021    KRX23821.1    JYDU01000010    KRY00136.1   
Pfam
PF00098   zf-CCHC        + More
PF13976   gag_pre-integrs
PF00665   rve
PF07727   RVT_2
PF13961   DUF4219
PF17906   HTH_48
PF03564   DUF1759
Interpro
IPR001878   Znf_CCHC        + More
IPR036875   Znf_CCHC_sf       
IPR025724   GAG-pre-integrase_dom       
IPR036397   RNaseH_sf       
IPR001584   Integrase_cat-core       
IPR039537   Retrotran_Ty1/copia-like       
IPR012337   RNaseH-like_sf       
IPR013103   RVT_2       
IPR025314   DUF4219       
IPR041426   Mos1_HTH       
IPR005312   DUF1759       
SUPFAM
SSF57756   SSF57756        + More
SSF53098   SSF53098       
Gene 3D

Ontologies

Topology

Length:
258
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00888
Exp number, first 60 AAs:
0.00018
Total prob of N-in:
0.01560
outside
1  -  258
 
 

Population Genetic Test Statistics

Pi
31.020902
Theta
48.686479
Tajima's D
1.500021
CLR
22.790198
CSRT
0.787960601969901
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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