Silkworm Genome Informatics Database

Gene

KWMTBOMO00834 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA009685

Annotation

hypothetical_protein_KGM_20484_[Danaus_plexippus]

Location

Bomo_Chr2(-):4015070-4020030 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.416

CDS

ATGCAGAAACAAGTGCCTGCTAAAGGTAAAAAACGTAAAGCAAATACAAACTTAGTAACATCGGAACCTAAAAATGTGAAACAAAACTCTTTGGTTAACTCTGATAATAAAAATAGCATCTTAGATCCTAAAAATATTAACAAAAACGTTAATAAGAATAAAAATAAACAAAAAAATCAAAATACTGTTAATTTGGCACCTATTTTAGCCCAGTCTAATCTGGCAACTTCCACAGACAAAAATAACACTAAAAATGACACAAACATAAAAAAATTTGACAATTCTGGGAAGAACAAACAACAACAGAAATCAAAACCAACTCCGCTAGCAGAAAAAAACGTTATTGATGCAGGTGGAATTAAAATTGAAAACGACATTAAAAAAGAGACTGATTCGAATGCGGCTAAAAAAAAAAGGAGAAACAAGCGTAAAAAGATACCCGCACAAGCAACCTTGCTTAATGAAAATGGTATGAATGACTCGAGTGATGATGAAGACGTACCTGACAAAAGTATACCTCAAAAACAGACTCAGACTCAGAAACCTAAGAAAAATGTACTTAAAATAAATAATACACTGCCTGTCGTGCATAAAACTGAAAACGAAGCAGATGTGTCTAGTGACGATGAAGCCCCACCTGCAAATGACAAGAAGAGTGCCAACTTACCTGACGCAGTGCAGAAGAAGAAGAAAAATAAACGCAAGAAGAAGAATGCGGCGACCAAGGTTGAAATTTCAAATGGTAATGAATCTTCAAATAACCAAGGAGAAAAAACACCTCAACAAGCACTTAAAAGTAAGAAAAATAAACAAAACATTGCAAATGGCAAAAATACTGAAGAATCCAGTGAAGATGAAGACTCCAGTGAAAAACCTCAAACGATTATAAATCAAAACGGTAAAGCACAGTCATCAAATGCATCTTCAGCGTCTAGTGATGAAGAACCACCGAAAAAGGATGGTAAAGTCAAACTGAACAATAAAGATATAAAAACGGCCGCCTTGTTGAAGGTTAAGCATGAGGCAGACAAAATAGATATGTCCGAAAGATATCCCATATTGAAAGATCAAAAGTTTGTGGAATCTTTCATGAATGTTAAAATCACTAACGGTCAGAAAGGTCGCATAAGGCAAGCCTTGTTTAAACAGTTCAAAGACATACCAGACGAACAAAAACCAGACCTAATCCATGCGAGAATTCAAGCCATGATCAAAGGAACTATCATGAATGATTCACAATTACGCAGAATTCGGATTCTATATAATATGCTGAAAGAGACACTTAAGAAGCTGGGACACAAAACTCCTGTCGTAGAAAATTTAAGTAAAGAGAAAAAGCAAAAGGTTTCCAAAGAGCAAGAGAAGGTTAAGGGGCCAAAGAGATATGTGGTGTTTGTAGGAAATCTACCAGTGGGAATTCAAAAGGAGAGACTTACACATCATTTCTTAGACATAAGTGACAACATTAAGGACATCAGATTGCCTGAAACTCCAGAAGGCAAGAAAGCTGCAATTGCCTATATCGAACTAGATAATGAAACAAGTTATGAGCTGGCACTGTCAAAGAATCACACAATGTTGGACAACAGGAGAATCAACGTACAGTATTCCGTGCAGAAGAACAGTAAAATAACATTAACCGAAGCCAAGGGTAAATCAGCGAAACTGTTGGCCTTACAGAAAGCTGGAAAGCTTATCGGTAGCGTCCCGCTGGAGCAGAAGCGAAGTCAACGTCGTAACAAGATGAAAAAAATGCGCGCTGAAGCCGAAGCTACGGCGTGA

Protein

MQKQVPAKGKKRKANTNLVTSEPKNVKQNSLVNSDNKNSILDPKNINKNVNKNKNKQKNQNTVNLAPILAQSNLATSTDKNNTKNDTNIKKFDNSGKNKQQQKSKPTPLAEKNVIDAGGIKIENDIKKETDSNAAKKKRRNKRKKIPAQATLLNENGMNDSSDDEDVPDKSIPQKQTQTQKPKKNVLKINNTLPVVHKTENEADVSSDDEAPPANDKKSANLPDAVQKKKKNKRKKKNAATKVEISNGNESSNNQGEKTPQQALKSKKNKQNIANGKNTEESSEDEDSSEKPQTIINQNGKAQSSNASSASSDEEPPKKDGKVKLNNKDIKTAALLKVKHEADKIDMSERYPILKDQKFVESFMNVKITNGQKGRIRQALFKQFKDIPDEQKPDLIHARIQAMIKGTIMNDSQLRRIRILYNMLKETLKKLGHKTPVVENLSKEKKQKVSKEQEKVKGPKRYVVFVGNLPVGIQKERLTHHFLDISDNIKDIRLPETPEGKKAAIAYIELDNETSYELALSKNHTMLDNRRINVQYSVQKNSKITLTEAKGKSAKLLALQKAGKLIGSVPLEQKRSQRRNKMKKMRAEAEATA

Uniprot

H9JJI4

Pubmed

19121390

EMBL

BABH01017530

Proteomes

UP000005204

PRIDE

H9JJI4

Pfam

PF00076 RRM_1

Interpro

IPR035979   RBD_domain_sf        + More
IPR000504   RRM_dom
IPR012677   Nucleotide-bd_a/b_plait_sf

SUPFAM

SSF54928 SSF54928

Gene 3D

3.30.70.330

ProteinModelPortal

H9JJI4

PDB

2DB1 E-value=0.0321402, Score=89

KEGG

101746268 no KO assigned | (RefSeq) nucleolin-like

GO

GO:0003723 GO:0003676 GO:0000166 GO:0005515 GO:0008270 GO:0043565 GO:0003677 GO:0004887 GO:0003707 GO:0016021

Length:

593

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00122

Exp number, first 60 AAs:

1e-05

Total prob of N-in:

0.00246

outside

1 - 593

Pi

311.842664

Theta

181.588509

Tajima's D

2.133647

CLR

0.011212

CSRT

0.899705014749263

Interpretation

Uncertain

Source	Sequence	Identity	Evalue
27530593	RRLEDDDSDNEGADDPDLERE	100.00	4e-11
27530593	RAPAPVYTFSDDEEETKRV	100.00	4e-11
27530593	KYAFEDSSDDSHENSKM	100.00	2e-07
27530593	RYFNINADSDNEDNED-	100.00	2e-07
27102218	ITITEAK	100.00	0.001
28556443	IGDLFEPWIPVR	100.00	0.001

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics