Gene

KWMTBOMO00830

Annotation

endonuclease-reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr2(+):3762991-3764644      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 1.926

CDS

ATGATCATGTGTTTTATTGACTACAGTAAAGCCTTTGATTGCGTCAAATGGGATCACCTGTGGAAAATACTAGCAGAATTGGGAGTACCGCAACATCTGGTCCTACTGCTACATAACCTGTACATTAATAACCAGGGAATCATTAGAGTGGAGGAAACAATCTCTGCCCCCTTTAAATTTAGGAAGGGCGTAAGGCAAGGCTGCATATTATCTCCAGTCCTTTTCAATATCTATGGAGAGTATATCATGAGACGGACTTGTGAAGGCTGGGATGGTGGAGTTACCATTGGTGGAGTAAAATTGACCAACCTCCGATACGCCGACGACACCACTCTTCTCGCGGCTAATGAAAGCGAGATGGCTGCTCTCATGAGCAAGCTTGAAAAAATTAGCCTCGAACTTGGTCTTCCCATTAACCGATCCAAAACACAAGTGATGGTAATAGACCGCATGAACAAACTGGAGCACACGGGGTCACTGCATCTTGAAACAACAGAAAGATTCATATACCTGGGCTCCATGATTGCGAATACTGGATCGTGCGAGCCTGAGATTCGAAGACGTATCGGGATAGCAAAAACTGCCATGTCTCAGCTTGATAGCATCTGGTTCGATAGAAACATCTCCATAAAAACCAAGCGTAAACTTGTAACAAGTCTTGTGTTTTCTATTTTCTTATATGGGGCGGAGACATGGACTCTGAAGAAGGCTGATCGAAGTCGGATCGACGCGTTTGAGATGTGGTGCTGGAGGAAAATGCTGCGGATTCCCTGGACGGCGCATCGGACAAACGCATCAATCCTGGAAGAACTAGGCGTCTCCTTAAGACTCTCCACCATTTGCCTACGTAGGATTTTAGAGTTTTTCGGTCATGTTGCGAGAAAAAAGGGTGACAATCTCGAAAGACTTCTCATCACCGGCAAAGTGGAAGGAAAGAGGCCTAGGGGGCGTAGTCCCATGCGCTGGTCCGATCAGATCAAGACGACTTTGGAATCCAGCATCAATGTCGCTATCCACTGCGCGGAGGACAGAAGTGAATGGAAGAACATAGTCCGGACAAAAGTGCTCAGTAAAGGTCACGACCCTCAGAACTGA

Protein

MIMCFIDYSKAFDCVKWDHLWKILAELGVPQHLVLLLHNLYINNQGIIRVEETISAPFKFRKGVRQGCILSPVLFNIYGEYIMRRTCEGWDGGVTIGGVKLTNLRYADDTTLLAANESEMAALMSKLEKISLELGLPINRSKTQVMVIDRMNKLEHTGSLHLETTERFIYLGSMIANTGSCEPEIRRRIGIAKTAMSQLDSIWFDRNISIKTKRKLVTSLVFSIFLYGAETWTLKKADRSRIDAFEMWCWRKMLRIPWTAHRTNASILEELGVSLRLSTICLRRILEFFGHVARKKGDNLERLLITGKVEGKRPRGRSPMRWSDQIKTTLESSINVAIHCAEDRSEWKNIVRTKVLSKGHDPQN

Uniprot

D7F163   D7F168   D7F161   D7F172   D7F162   D7F167   + More
D7F175   D5LB39   A0A2W1BGD9   A0A2H1VU13   W5NMM5   A0A2H6KKM9   A0A2G8JE23   H3B2Y3   A0A061BKJ9   W4YPU3   H2YWZ5   A0A2A4J795   O97916   W5PUC3   W4XFH1   D5LB38   A0A2S2QAF2   A0A023G885   W5N9W4   A0A2G8L6P4   A0A2G8JVI4   A0A2V9X8L4   W5NGM3   A0A0A9XCF5   A0A0J7KZE8   W4XIJ3   A0A146L0Z1   W5MYT3   A0A0J7KRQ5   W4YB77   A0A2S2QE77   A0A2S2PMS6   W4Z133   A0A2A4JBK9   A0A0P4W0B7   W5MW50   A0A076N1B6   A0A2J7RP34   A0A2J7QD50   A0A2A4JXP9   A0A2J7RQ44   A0A2J7Q7C4   A0A0A9WMP5   A0A2J7PGM6   A0A2J7PL44   A0A2J7PIT8   A0A2J7Q5G7   A0A2J7QJR1   A0A2J7PLH7   A0A2J7QQV1   A0A2J7RCA8   A0A2J7RSR3   A0A2J7QTS6   A0A2J7PRL8   A0A2J7PPW0   A0A2J7PBA6   A0A2J7Q6A9   A0A2J7PES2   A0A2J7RLC6   A0A2J7R6B0   A0A2J7RQF4   A0A2J7RL85   A0A2J7RIB8   A0A2J7R0K9   A0A2J7QYR3   A0A2J7RAR3   A0A2J7RKX8   A0A2J7QV96   A0A2J7R7G1   A0A2J7PTP5   A0A2J7QE39   A0A2J7R076   A0A2J7PUJ0   A0A2J7PHX7   A0A2J7QQQ3   A0A2J7QTA1   A0A2J7QGV0   A0A2J7PZ27   A0A2J7PKG5   A0A2J7QD92   A0A2J7QTX6   A0A2J7QCR2   A0A2J7PUR2   A0A2J7PM48   A0A2J7QBX6   A0A2J7QSH1  

Pubmed

20470440    28756777    29078748    29023486    9215903    10555285    + More
20809919    25401762    26823975   

EMBL

FJ265548    ADI61816.1    FJ265553    ADI61821.1    FJ265546    ADI61814.1    + More
FJ265557    ADI61825.1    FJ265547    ADI61815.1    FJ265552    ADI61820.1    FJ265560    ADI61828.1    GU815090    ADF18553.1    KZ150203    PZC72267.1    ODYU01004401    SOQ44236.1    AHAT01022938    BDSA01000081    GBE63537.1    MRZV01002322    PIK33998.1    AFYH01119920    LK055282    CDR71995.1    AAGJ04055194    NWSH01002736    PCG67606.1    AJ132772    CAA10770.1    AMGL01091659    AMGL01091660    AMGL01091661    AMGL01091662    AMGL01091663    AMGL01091664    AMGL01091665    AMGL01091666    AMGL01091667    AMGL01091668    AAGJ04075245    GU815089    ADF18552.1    GGMS01004979    MBY74182.1    GBBM01006298    JAC29120.1    AHAT01022314    MRZV01000196    PIK55924.1    MRZV01001207    PIK39730.1    QIAP01000240    PYX61602.1    AHAT01008485    GBHO01028834    JAG14770.1    LBMM01001656    KMQ95932.1    AAGJ04122993    GDHC01017214    JAQ01415.1    AHAT01017643    LBMM01003995    KMQ92919.1    AAGJ04093867    GGMS01006790    MBY75993.1    GGMR01018096    MBY30715.1    AAGJ04171899    NWSH01001998    PCG69477.1    GDRN01098129    JAI59014.1    AHAT01013219    KF881087    AIJ27486.1    NEVH01002141    PNF42600.1    NEVH01015827    PNF26505.1    NWSH01000469    PCG76200.1    NEVH01001347    PNF42965.1    NEVH01017443    PNF24479.1    GBHO01034555    JAG09049.1    NEVH01025174    PNF15486.1    NEVH01024527    PNF17048.1    NEVH01024955    PNF16252.1    NEVH01017562    PNF23821.1    NEVH01013550    PNF28814.1    NEVH01024426    PNF17169.1    NEVH01012082    PNF30956.1    NEVH01005885    PNF38476.1    NEVH01000251    PNF43864.1    NEVH01011193    PNF31991.1    NEVH01021956    PNF18969.1    NEVH01022644    PNF18361.1    NEVH01027118    PNF13626.1    NEVH01017534    PNF24119.1    NEVH01026089    PNF14819.1    NEVH01002690    PNF41636.1    NEVH01006832    PNF36369.1    NEVH01001338    PNF43058.1    NEVH01002692    PNF41604.1    NEVH01003502    PNF40578.1    NEVH01008232    PNF34368.1    NEVH01009084    PNF33722.1    NEVH01006565    PNF37921.1    NEVH01002704    PNF41497.1    NEVH01010478    PNF32508.1    NEVH01006732    PNF36770.1    NEVH01021229    PNF19699.1    NEVH01015334    PNF26845.1    NEVH01008283    PNF34242.1    NEVH01021197    PNF19999.1    NEVH01025130    PNF15928.1    NEVH01012083    PNF30919.1    NEVH01011198    PNF31808.1    NEVH01014359    PNF27807.1    NEVH01020341    PNF21589.1    NEVH01024544    PNF16826.1    NEVH01015826    PNF26547.1    NEVH01011192    PNF32037.1    NEVH01015905    PNF26381.1    NEVH01021193    PNF20060.1    NEVH01024421    PNF17406.1    NEVH01021216    NEVH01021205    NEVH01018378    NEVH01016294    NEVH01013243    NEVH01011194    NEVH01011186    PNF19803.1    PNF19913.1    PNF23519.1    PNF26082.1    PNF29477.1    PNF31895.1    PNF32189.1    NEVH01011876    PNF31534.1   

Proteomes

UP000018468    UP000230750    UP000008672    UP000007110    UP000007875    UP000218220    + More
UP000002356    UP000247801    UP000036403    UP000235965   

PRIDE

D7F163    D7F168    D7F161    D7F172    D7F162    D7F167    + More
D7F175    D5LB39    D5LB38   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2

Interpro

IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR002138   Pept_C14_p10       

SUPFAM

SSF56219   SSF56219       

Gene 3D

3.60.10.10    

ProteinModelPortal

D7F163   D7F168   D7F161   D7F172   D7F162   D7F167   + More
D7F175   D5LB39   A0A2W1BGD9   A0A2H1VU13   W5NMM5   A0A2H6KKM9   A0A2G8JE23   H3B2Y3   A0A061BKJ9   W4YPU3   H2YWZ5   A0A2A4J795   O97916   W5PUC3   W4XFH1   D5LB38   A0A2S2QAF2   A0A023G885   W5N9W4   A0A2G8L6P4   A0A2G8JVI4   A0A2V9X8L4   W5NGM3   A0A0A9XCF5   A0A0J7KZE8   W4XIJ3   A0A146L0Z1   W5MYT3   A0A0J7KRQ5   W4YB77   A0A2S2QE77   A0A2S2PMS6   W4Z133   A0A2A4JBK9   A0A0P4W0B7   W5MW50   A0A076N1B6   A0A2J7RP34   A0A2J7QD50   A0A2A4JXP9   A0A2J7RQ44   A0A2J7Q7C4   A0A0A9WMP5   A0A2J7PGM6   A0A2J7PL44   A0A2J7PIT8   A0A2J7Q5G7   A0A2J7QJR1   A0A2J7PLH7   A0A2J7QQV1   A0A2J7RCA8   A0A2J7RSR3   A0A2J7QTS6   A0A2J7PRL8   A0A2J7PPW0   A0A2J7PBA6   A0A2J7Q6A9   A0A2J7PES2   A0A2J7RLC6   A0A2J7R6B0   A0A2J7RQF4   A0A2J7RL85   A0A2J7RIB8   A0A2J7R0K9   A0A2J7QYR3   A0A2J7RAR3   A0A2J7RKX8   A0A2J7QV96   A0A2J7R7G1   A0A2J7PTP5   A0A2J7QE39   A0A2J7R076   A0A2J7PUJ0   A0A2J7PHX7   A0A2J7QQQ3   A0A2J7QTA1   A0A2J7QGV0   A0A2J7PZ27   A0A2J7PKG5   A0A2J7QD92   A0A2J7QTX6   A0A2J7QCR2   A0A2J7PUR2   A0A2J7PM48   A0A2J7QBX6   A0A2J7QSH1  

KEGG

105841345    no KO assigned | (RefSeq) uncharacterized LOC105841345

GO

GO:0003964   GO:0004519   GO:0004197  

Length:

364

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

2.83408

Exp number, first 60 AAs:

0.20157

Total prob of N-in:

0.14117

outside

1  -  364

 

 

Pi

62.852808

Theta

48.771494

Tajima's D

2.336124

CLR

0.102541

CSRT

0.928553572321384

Interpretation

Uncertain