SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO00825
Annotation
unnamed_protein_product_[Bombyx_mori]
Location in the cell
Mitochondrial   Reliability : 2.478
 

Sequence

CDS
ATGGAGTTATCTGCTGCAAGTCTCTTAACACAGCTTATGATACGTGTCTCGACTCAATTGTTGTCCCATATTACCATAAAGCAACACATATGCTGGTCAGACAGTACCATTGTCCTAGCATGGCTAAACACACTTCCTCATAGACTTCAGGTCTTTGAAGCTAACAGGGTTGCCAAGATAACATCCAATCCAATCACCTCCACATGGAAACATGTTCCTACAAACCTGAACCCTGCAGACTGTGCGAGCAGGGGAATGTCTGCCCAGTCACTATCAGCTCATGATCTTTGGTGGTCTCCTAGCTGGCTGAAGGAGCCTCCTGACACCTGGCCCAAAATGCCTCCTGCTCTAGGCCACCATGCATTACCAGGTCTGAAGCCCAAGAAAGTACCAGCTCATATAGCAGTTCCTGACCTCGACCTTGACTTGCTTACTCGATTCAGTTCTCTCGACAAGCTCATTGGAGTGACAGCTTGCATAAAACGCTTTATTTTCAATTGTAGACACAACTCAACTGATAGGTGCTCTGGTCCCTTGACAGTTGGAGAACGTAGAGATGCTCTGTTATTCTGGGTTCGCTCTGTTCAACACAATGAGTTTGCGGAAGAAATTTACCGTCTTCAGGCAGGCAAGATTTGTACCGTTCGACTTCAGCGTCTTTCACCCTTGATGAAAGATGATCTCTTGAGAGTTGGTGGTCGCCTCACTCATGCGCCAATAAGATACGATGCTCAGCATCCTCTCGTTCTGCCCAGCTCTAGCCCACTAGTTGATCTCATCATAGACCACTATCACAGAATAAACTGTCATCCTGGGGCTGACACATTACACGCTATCCTCCGTCAGCAGTTCTGGATACTCTCAGCACGTCGTGTCATCAGGCATCGCGTGTACAAATGCATTAGATGTTTCCGATATCGCGCTCAGGCCAGGGCTCCGTTGATGGCTGATTTGCCCGCAGACAGGGTCACACCCCAGCCACTCATCCAAGCTCTCTCTCAGCGTTTTTGGACTCTGTGGACCAAATCCTATCTCCATACCCTCCAAACCCGCTCCAAATGGCTTTCCACATCCTCACCTCCTCAAGTTGGAGAGCTCGTCCTCATCAAAGAGGACAATCAGCCCCCGCTGCAATGGAAACTTGGAAGGATTATCCGCACGTTACCCGGCAAGGATGGAGTGATCAGAGTCGTGGATTTGGACACGAAGCATGGAAGTCTGCGGAGACCTGTGTTCAAGTTAGCCAGGTTGCCGCTGGATTCAGCACATGAAGAAGTTCAGCCCCGGCCGCCCCAGGATGTATGA
Protein
MELSAASLLTQLMIRVSTQLLSHITIKQHICWSDSTIVLAWLNTLPHRLQVFEANRVAKITSNPITSTWKHVPTNLNPADCASRGMSAQSLSAHDLWWSPSWLKEPPDTWPKMPPALGHHALPGLKPKKVPAHIAVPDLDLDLLTRFSSLDKLIGVTACIKRFIFNCRHNSTDRCSGPLTVGERRDALLFWVRSVQHNEFAEEIYRLQAGKICTVRLQRLSPLMKDDLLRVGGRLTHAPIRYDAQHPLVLPSSSPLVDLIIDHYHRINCHPGADTLHAILRQQFWILSARRVIRHRVYKCIRCFRYRAQARAPLMADLPADRVTPQPLIQALSQRFWTLWTKSYLHTLQTRSKWLSTSSPPQVGELVLIKEDNQPPLQWKLGRIIRTLPGKDGVIRVVDLDTKHGSLRRPVFKLARLPLDSAHEEVQPRPPQDV

Summary

EMBL
AB012907    BAA33577.1    AB012906    BAA33576.1    DS497760    EFA13221.1    + More
GEBQ01018232    JAT21745.1    GEBQ01015599    JAT24378.1    GECU01010337    JAS97369.1    GEBQ01007199    GEBQ01000222    JAT32778.1    JAT39755.1    GEBQ01022991    GEBQ01006185    JAT16986.1    JAT33792.1    GECZ01006169    JAS63600.1    GALX01004947    JAB63519.1    ABLF02052963    GBHO01021103    GBHO01021101    JAG22501.1    JAG22503.1    GGMR01000737    MBY13356.1    GBHO01008418    GBHO01008416    JAG35186.1    JAG35188.1    GBHO01004194    JAG39410.1    ABLF02008594    GEBQ01005223    JAT34754.1    GBHO01004196    JAG39408.1    GBHO01023090    JAG20514.1    GEBQ01029803    JAT10174.1    GBHO01019177    GBHO01003185    JAG24427.1    JAG40419.1    GBHO01034065    GBHO01034061    JAG09539.1    JAG09543.1    ABLF02017373    GBHO01030122    GBHO01030121    GBHO01030120    GBHO01030116    JAG13482.1    JAG13483.1    JAG13484.1    JAG13488.1    GBHO01003578    JAG40026.1    ABLF02035110    ABLF02067347    GDHC01006469    JAQ12160.1    ABLF02006304    ABLF02036268    GDHC01018560    JAQ00069.1    GGMR01017890    MBY30509.1    ABLF02030854    GDHC01006567    JAQ12062.1    GBHO01006408    JAG37196.1    ABLF02041863    GBRD01007977    JAG57844.1    LBMM01009964    KMQ87756.1    GBHO01044316    JAF99287.1    GBHO01044317    GBHO01044315    JAF99286.1    JAF99288.1    GGMR01015135    MBY27754.1    LBMM01009551    KMQ88039.1    LBMM01012392    KMQ86241.1    QOIP01000009    RLU19130.1    GALX01005107    JAB63359.1    GGMR01013370    MBY25989.1    GBHO01027036    GBHO01010996    GBHO01010995    GBHO01010993    GBHO01010991    JAG16568.1    JAG32608.1    JAG32609.1    JAG32611.1    JAG32613.1    GBHO01038469    JAG05135.1    MCIT02012214    PHT96336.1    GEZM01072348    JAV65549.1    GGMR01002421    MBY15040.1    MCIT02006707    PHT96417.1    GDHC01011948    JAQ06681.1    GBHO01009080    JAG34524.1    LBMM01018894    KMQ83668.1    GBHO01010487    GBHO01010485    JAG33117.1    JAG33119.1    ABLF02008636    ABLF02065931    GAIX01013989    JAA78571.1    JTDY01005490    KOB66948.1    GBHO01010489    GBHO01010484    JAG33115.1    JAG33120.1    RLU18850.1    KQ973442    KXZ75531.1    QOIP01000002    RLU25473.1    ABLF02028666    ABLF02066713    ABLF02017056    GAMC01003146    JAC03410.1    LNIX01000063    OXA37199.1    GBHO01019080    JAG24524.1    GBYB01004444    JAG74211.1    ABLF02008635    ABLF02023121    ABLF02065930    LBMM01006539    KMQ90520.1    GBBI01004409    JAC14303.1    GEZM01054765    JAV73413.1    LNIX01000016    OXA46198.1    GBBI01004407    JAC14305.1    LNIX01000069    OXA36894.1    LNIX01000007    OXA51795.1    GBHO01034064    JAG09540.1    GBHO01045636    GBHO01045635    JAF97967.1    JAF97968.1    GEZM01085145    GEZM01085143    JAV60187.1    GBHO01027267    JAG16337.1    LBMM01011492    KMQ86800.1    KK114194    KFM61875.1    GBRD01004944    GBRD01004943    GBRD01004942    JAG60878.1    GDHC01014057    JAQ04572.1    LBMM01005079    KMQ91831.1   
Pfam
PF17921   Integrase_H2C2        + More
PF05380   Peptidase_A17
PF18701   DUF5641
PF00665   rve
PF03564   DUF1759
PF05585   DUF1758
PF00078   RVT_1
PF17919   RT_RNaseH_2
PF17917   RT_RNaseH
Interpro
IPR008042   Retrotrans_Pao        + More
IPR041588   Integrase_H2C2       
IPR040676   DUF5641       
IPR036397   RNaseH_sf       
IPR012337   RNaseH-like_sf       
IPR001584   Integrase_cat-core       
IPR008737   Peptidase_asp_put       
IPR005312   DUF1759       
IPR021109   Peptidase_aspartic_dom_sf       
IPR001995   Peptidase_A2_cat       
IPR001969   Aspartic_peptidase_AS       
IPR000477   RT_dom       
IPR001878   Znf_CCHC       
IPR041373   RT_RNaseH       
IPR041577   RT_RNaseH_2       
SUPFAM
SSF53098   SSF53098        + More
SSF50630   SSF50630       
Gene 3D

Ontologies

Topology

Length:
434
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.01741
Exp number, first 60 AAs:
0.01699
Total prob of N-in:
0.00180
outside
1  -  434
 
 

Population Genetic Test Statistics

Pi
0
Theta
0
Tajima's D
0
CLR
0.038021
CSRT
0
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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