Silkworm Genome Informatics Database

Gene

KWMTBOMO00822

Pre Gene Modal

BGIBMGA009691

Annotation

PREDICTED:_histidine_decarboxylase_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr2(-):3533258-3573836 View in EpiBrowser

Location in the cell

Cytoplasmic Reliability : 3.015

CDS

ATGGACCACACCGAATTCCGTGTGAAAGCAAAAGAGATGGTGGACTACATTGCGGACTATTTGGAGAACATCAGGGACCGCCGCGTCTACCCGGGGGTCCAGCCTGGCTACCTCCACAAGCTGTTGCCGACCGAAGCTCCAGAAAAACCCGAGAAGTGGGATGATATTTTCAAAGACGTAGACCAACACATCATGCCCGGGCTGGTCCATTGGCAGAGTCCGCACATGCATGCGTACTTTCCGGCTCTGACATCATATCCTTCAATTATGGGGGACATGTTATCGAGCGCTCTGAACGTCCTCTGCTTTACCTGGGCATCTTCTCCGGCCGGTACTGAATTGGAGACTATAGCGATGAACTGGCTGGGCAAACTCCTGGGATTGCCGGAGTGCTTCTTAAATGAGAAGAACGATAGCCCGGGCGGCGGAGTTATCCAGACTACGGCAAGCGAAGCGACTCTGGTCAGTCTACTGGCAGCTCGCACCAGGGCTTTGATGGAGCTTTCCAAGCTCAATCCAGAGCTTCAAGCGGCAGAGCTGTTGGGACATCTCATCTGCTACTGTTCGGATCAGGCGCATTCTTCTGTCGAGAAGGCCGGTTTAATTGGCTTGGTTCGGATGAGGTACATCGAGTCTGATGAAGGGCAGAGCATGCGAGGTGCTAAGCTGGAGGAAGCTATCGCTGCCGACAAAGAAAAGGGCCTGGTGCCTTTTTGGGTGTGTGCAACATTAGGCACAACAGGATCTGTGGCGTTCGACAATCTCCGTGAGATAGGTCAGGTCTGCCAGAAACACGGAGCCTGGCTACACGTGGATGCGGCATATGCTGGAAGCGCTTTCGTTTGTCCCGAATACAGACATTGGCTGGATGGAGTGGAACTTGCCGATTCCTTCGCTTTCAACCCATCCAAATGGTTAATGGTGAACTTTGACTGCACTGCGATGTGGGTAAAGGACAGTACTGCTCTGCATCGAACTTTCAATGTCAATCCAATTTACTTGAGACACGAAAATTCAGGAAAAGCAATAGATTACATGGTCGGATCCCAGAACGAAGACATAAAAAAGTTGACACTAAAAAAGATAAACATTATGAACGATATTGATCATCCGAAAGCTGACGATAACAAAGTTGATAACAAATTTAACAAAAACAATGGGGTAATCACACAAATTGAGAATCGTAATATTACCAAAGTTGATGCCGTCGAAGTGAGTACCGATGTTGATGGTAATATTGGTAAAGATGACGATTTATACGATGCTGTTGGCGATACAAAGAACCTTCATGGCTACAATAAAATATCACACGGATGCGGTAAAATCATACAACTGGAAGATCCTAATAAGAAGGAGCTACTTCATTGGCAGATTCCGTTGAGTCGTCGTTTCAGAGCTTTAAAGCTCTGGTTTGTGCTGCGAAACTATGGTGTTGTTGGCATTCAAAAACATATCCGTGAGGGTGTGCGCTTGGCCCAAAAATTCGCGGCTCTAGTGCTGGCCGATCCGAGATTCGAGATTCCACAACCAAGTAACTTGGGTATGGTGGCATTCCGTCTGAAAGGCGACAACGCTTTCACCGAGCGTCTCCTGAAGCGGTTGAACGCTCGTGGCTACATCCACGCCGTCCCTGCCTGTTTCAAAGGCATTTACGTCATCAGATTCACCATCACCTCTCAGAGGACGACTAATCAGGATATTTTGGACGATTGGAACGAAATTAAAATTGTAGCTTCCGAGATATTAACTGACGTATTTGGTTCGGAGAACGGTAACATTGCTGTGGTCAAGAAGCCAAGAATCTCATTAAAAGAAACCCGAGAATTAAACGCGACTTTCGGGACAAGTCTTCTTCTCGCAAACAGTCCGATGAGTCCAAAAATCGTGAACGGAACTCACGCTGCCATCTGTGATTATGAACAGGTTCTAACATCGTGCGCGCAGACTTTTGCGCAACTAAAAATGGAACCTAAAGACAGTCCTGAGATGCGTCGACGTATCCGTGGCATCAAAATGTGTGGCAAGAAGTTCTCTCTTGACTCTTGCATGGATATGGTCCAGGGCATGATGATAGAACAGCCTCTGCCGCAGTTCGAGGAAGAAAGAGAAGATGCTTCCAATGGGGCAAACACTGAAACAATTGAAGCCAAAATATGTTGA

Protein

MDHTEFRVKAKEMVDYIADYLENIRDRRVYPGVQPGYLHKLLPTEAPEKPEKWDDIFKDVDQHIMPGLVHWQSPHMHAYFPALTSYPSIMGDMLSSALNVLCFTWASSPAGTELETIAMNWLGKLLGLPECFLNEKNDSPGGGVIQTTASEATLVSLLAARTRALMELSKLNPELQAAELLGHLICYCSDQAHSSVEKAGLIGLVRMRYIESDEGQSMRGAKLEEAIAADKEKGLVPFWVCATLGTTGSVAFDNLREIGQVCQKHGAWLHVDAAYAGSAFVCPEYRHWLDGVELADSFAFNPSKWLMVNFDCTAMWVKDSTALHRTFNVNPIYLRHENSGKAIDYMVGSQNEDIKKLTLKKINIMNDIDHPKADDNKVDNKFNKNNGVITQIENRNITKVDAVEVSTDVDGNIGKDDDLYDAVGDTKNLHGYNKISHGCGKIIQLEDPNKKELLHWQIPLSRRFRALKLWFVLRNYGVVGIQKHIREGVRLAQKFAALVLADPRFEIPQPSNLGMVAFRLKGDNAFTERLLKRLNARGYIHAVPACFKGIYVIRFTITSQRTTNQDILDDWNEIKIVASEILTDVFGSENGNIAVVKKPRISLKETRELNATFGTSLLLANSPMSPKIVNGTHAAICDYEQVLTSCAQTFAQLKMEPKDSPEMRRRIRGIKMCGKKFSLDSCMDMVQGMMIEQPLPQFEEEREDASNGANTETIEAKIC

Cofactor

pyridoxal 5'-phosphate

Uniprot

A0A2H1WKN2 A0A194QZT6 A0A194PUW9 A0A212FJT1 A0A2A4J5F9

Pubmed

26354079 22118469

EMBL

ODYU01008970 SOQ53014.1 KQ460890 KPJ10967.1 KQ459593 KPI96544.1 + More
AGBW02008218 OWR53998.1 NWSH01003008 PCG67119.1

Proteomes

UP000053240 UP000053268 UP000007151 UP000218220

Pfam

PF00282 Pyridoxal_deC

Interpro

IPR015422   PyrdxlP-dep_Trfase_dom1        + More
IPR010977   Aromatic_deC
IPR015424   PyrdxlP-dep_Trfase
IPR002129   PyrdxlP-dep_de-COase
IPR021115   Pyridoxal-P_BS
IPR015421   PyrdxlP-dep_Trfase_major

SUPFAM

SSF53383 SSF53383

Gene 3D

3.90.1150.10 3.40.640.10

ProteinModelPortal

A0A2H1WKN2 A0A194QZT6 A0A194PUW9 A0A212FJT1 A0A2A4J5F9

PDB

4E1O E-value=2.42818e-132, Score=1212

KEGG

101745115 K01590 histidine decarboxylase [EC:4.1.1.22] | (RefSeq) histidine decarboxylase

PATHWAY

00340 Histidine metabolism - Bombyx mori (domestic silkworm)
01100 Metabolic pathways - Bombyx mori (domestic silkworm)

GO

GO:0016831 GO:0030170 GO:0006520 GO:0003824 GO:0019752 GO:0016020 GO:0004675 GO:0006559 GO:0004887 GO:0016021

Length:

719

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.468170000000001

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00538

outside

1 - 719

Pi

221.421325

Theta

168.683107

Tajima's D

1.249965

CLR

0.048067

CSRT

0.727713614319284

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics