SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO00812
Pre Gene Modal
BGIBMGA009739
Annotation
PREDICTED:_uncharacterized_protein_LOC105842573_[Bombyx_mori]
Location in the cell
Cytoplasmic   Reliability : 1.185 Mitochondrial   Reliability : 1.239 Nuclear   Reliability : 1.757
 

Sequence

CDS
ATGGCTTATAACGATTTCATTGACATCAAACAACTGCCCGTTCCTAGACTAAACAAAAGCGTTGAAAGTGAACTTTTAAAGGTGTCTGATATAAAAGTCATGAAAGTGGTGAAAGTTGAAGATGATAAGGTAAAATTTTGTTACAAAACATCCTACGTTGATGATTTCAAAAAACTTAACCTGGGATCTAAAAGAGCCAGTGCAAGGAACCAGAGGACTGAAGAATTGCAACATCTGTATAACCAAAAGTTAGATTTATCCGAAAGAAAAAAGAGTGACGTGAAAAGCCTTTTAGATGCTGGTTTGATACCCAACTTTTACAATTCCTACTTTGACAGAGTTTTGAACTAG
Protein
MAYNDFIDIKQLPVPRLNKSVESELLKVSDIKVMKVVKVEDDKVKFCYKTSYVDDFKKLNLGSKRASARNQRTEELQHLYNQKLDLSERKKSDVKSLLDAGLIPNFYNSYFDRVLN

Summary

Pfam
PF00400   WD40        + More
PF02138   Beach
Interpro
IPR036322   WD40_repeat_dom_sf        + More
IPR000409   BEACH_dom       
IPR036372   BEACH_dom_sf       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR001680   WD40_repeat       
IPR017986   WD40_repeat_dom       
IPR040416   TMEM181       
SUPFAM
SSF81837   SSF81837        + More
SSF50978   SSF50978       
Gene 3D

Ontologies

Topology

Length:
116
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00273
Exp number, first 60 AAs:
0
Total prob of N-in:
0.31421
outside
1  -  116
 
 

Population Genetic Test Statistics

Pi
395.538462
Theta
148.124961
Tajima's D
5.250319
CLR
0.972975
CSRT
0.999950002499875
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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