Gene

KWMTBOMO00810

Annotation

reverse_transcriptase_[Lasius_niger]

Location

Bomo_Chr2(+):3350607-3352428      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.711 Nuclear   Reliability : 1.722

CDS

ATGAGGAAATCGCCAACCGACCCTTGGGCCAAGAGTACAACTGAAAAAGCTGAGCTATTTGCAAATTACTTGTATGAAATATTTACCCCTAACCTATCACCAATGGAGGACTATGAAAAAGAAGTTGATGTCATGATTAATAGTGACCAGCAGCTATCCCTGCCACTCAAATCCGTCACCCCCAGGGAACTTACGCAATGTATACAGTCTCTTATAAATAAAAAAGCTCCTGGTTTTGATTTAATAACTGGTGAGGTACTTAAAAAATTGCCCAAAAAAGTAATAATATTTTTAACAATGTTATTCAATGCTATCCTCAGAGTACATTATTACCCAAAACTCTGGCAAATAGCACAAGTCTGCATGGTTATAAAGCCTGGAAAACCAGCGTCAGATCCAAGTTCATATAGGCCCATAAGTCTTCTACCTGTGTTGTCTAAGGTGTTTGAAACGGTATTTCTAAAAAGACTGAAGCCGCTTCTTGACCAGGAAAAGATTATACCGGATCATCAGTTTGGATTTCGGGCGAAGCATTCTACTGTCGAACAAGTACACAGAGTAGTTCATAAAATTCGACAATCCTTAGAAAAGAAGGAATACTGTTCTGCGGCATTTATTGACATCAAGCAAGCTTTCGATAAAGTCTGGCATAAGGGATTACTATATAAATTGAAAACCCTCCTACCGAATTCTTTTTTCATGCTCCTGAGATCCTACTTAAAACACAGAAAATTCCAAGTCAAATTTGGAGAGGACTGTTCGAAACTGTATAATATTAACGCCTCCGTACCCCAGGGATCAGTGCTTGGTCCGGTCCTGTTTTCTATCTATACTGCAGACCTGCCTCAATCCCAAGATGTTGTAACTGCGACTTACGCTGACGATACAGCTTGTCTGGCAAGTGACATAGATCCACATAATGCATCATTACAACTACAAGTACAGCTTGACAAAGTAGATGCTTGGTTGCAGAGATGGCGATTAAAACCTAGTGTAACTAAGTCAACGCAGGTAACATTCACCCTCCGGAAAGGTATCTGTGGCCCTGTTTACATGGAAGGTAAAGCTTTACCAAATGCCGACTCTGCGAAATACTTGGGATTACACCTAGACAGAAGATTAACCTGGGCGAACCATATAAAAGCAAAAAAACGAGAAGCGAACTTGCAATTTCTCTCTTTGAATTGGTTACTGGGACGCCGGTCTCCACTGTCACTAAGTAACAAACTCCTGGTCTACAAAGCGATTATAAAACCTGTCTGGACTTATGGAATAGAACTGTGGGGTTCCGCTAGCAACTCGAATATCGAGATCTTACAGAGATTCCAGAACATTGCTCTTAGAACTATCTCAAACGCGCATTGGTTTGTAAGAAATAGTGAGATTCACGAATATTTAGAAATGCCGACTGTTCGAGAGGAAGTCAACAAGAACAGCAAGAGATATAAGGAAAGACTAAATGAGCACTCAAATGAATTGGCAAGGTGCCTGCTAGACACAACTGGAGATGTGAAACGTTTAAAAAGATGGCAAATTTTAGACTTAGACCAAAGATACTAA

Protein

MRKSPTDPWAKSTTEKAELFANYLYEIFTPNLSPMEDYEKEVDVMINSDQQLSLPLKSVTPRELTQCIQSLINKKAPGFDLITGEVLKKLPKKVIIFLTMLFNAILRVHYYPKLWQIAQVCMVIKPGKPASDPSSYRPISLLPVLSKVFETVFLKRLKPLLDQEKIIPDHQFGFRAKHSTVEQVHRVVHKIRQSLEKKEYCSAAFIDIKQAFDKVWHKGLLYKLKTLLPNSFFMLLRSYLKHRKFQVKFGEDCSKLYNINASVPQGSVLGPVLFSIYTADLPQSQDVVTATYADDTACLASDIDPHNASLQLQVQLDKVDAWLQRWRLKPSVTKSTQVTFTLRKGICGPVYMEGKALPNADSAKYLGLHLDRRLTWANHIKAKKREANLQFLSLNWLLGRRSPLSLSNKLLVYKAIIKPVWTYGIELWGSASNSNIEILQRFQNIALRTISNAHWFVRNSEIHEYLEMPTVREEVNKNSKRYKERLNEHSNELARCLLDTTGDVKRLKRWQILDLDQRY

Uniprot

A0A2A4K8E7   A0A2A4K918   A0A0J7K4E0   A0A2J7PVE7   A0A2J7R7D0   A0A1Y1M7E9   + More
A0A2J7Q9Z1   A0A2J7PSM7   A0A2J7R4U3   A0A2J7QES2   A0A2A4IUM2   A0A2P8Z520   A0A2J7PVX3   A0A1Y1K0N4   A0A2J7QB68   A0A2J7R579   A0A2J7R4B1   A0A2J7QPI2   A0A1Y1LKN6   A0A1L8DIZ6   A0A2J7R8R8   A0A2J7R098   A0A2J7RQ52   A0A2J7PMN4   A0A0J7K811   A0A2J7PDM0   J9LYS0   A0A224X6T4   A0A2J7Q0S7   A0A0J7MYU2   A0A1Y1JXT3   A0A2S2NI07   A0A1B6KCY8   A0A2S2QLY2   A0A2J7PEB1   A0A142LX26   A0A069DVA6   A0A0A9YU04   A0A023F6S4   A0A069DZC5   A0A2S2Q7E7   A0A2J7RD70   A0A069DW01   A0A0A9YJ00   A0A224X6U5   X1WVQ4   A0A2S2NPJ7   A0A1B6EGD8   A0A224X746   A0A023F7D1   A0A1Y1JWM7   A0A224XK92   A0A2S2P0Y0   A0A023F069   A0A224X724   A0A023F700   A0A2H8U0H5   A0A2H8TL70   A0A034VFD2   A0A2S2P6S3   A0A0M4EWX7   A0A224XJI0   A0A2S2N6Q7   A0A2S2N9P4   A0A2S2N814   A0A2S2PNT5   A0A2S2NH02   X1WWD6   A0A2H8TKI9   A0A224XI99   A0A0J7K7J8   A0A0J7KBP6   Q6R811   A0A224X6R6   Q04135   A0A023F754   A0A1Y1KFR3   A0A2S2PH29   A0A069DX78   A0A224XHW8   J9LBC4   A0A0V0G5B6   A0A2S2P3X8   X1XSU7   A0A2S2NPG3   Q961V7   A0A2S2PX53   A0A2S2N629   A0A2S2P698   A0A142LX49   A0A2H8TF37   X1WUG2   A0A023F0I3   A0A2S2QJM7   A0A2H8TV33   A0A2S2NNQ6   A0A0A1WW72   A0A2S2QTZ8   J9M4H5   A0A2S2P7B2  

Pubmed

28004739    29403074    25527032    26334808    25401762    25474469    + More
25348373    14745026    1705654    25830018   

EMBL

NWSH01000032    PCG80497.1    PCG80496.1    LBMM01014395    KMQ85192.1    NEVH01020963    + More
PNF20308.1    NEVH01006736    PNF36716.1    GEZM01038405    JAV81653.1    NEVH01016340    PNF25410.1    NEVH01021925    PNF19341.1    NEVH01007402    PNF35856.1    NEVH01015305    PNF27092.1    NWSH01007753    PCG62823.1    PYGN01000192    PSN51582.1    NEVH01020940    PNF20481.1    GEZM01097906    JAV54051.1    NEVH01016302    PNF25823.1    NEVH01007393    PNF35987.1    NEVH01007578    PNF35646.1    NEVH01012089    PNF30491.1    GEZM01053022    JAV74219.1    GFDF01007661    JAV06423.1    NEVH01006721    PNF37225.1    NEVH01008277    PNF34262.1    NEVH01001347    PNF42959.1    NEVH01023979    PNF17579.1    LBMM01012078    KMQ86419.1    NEVH01026386    PNF14434.1    ABLF02041861    GFTR01008261    JAW08165.1    NEVH01019963    PNF22185.1    LBMM01013518    KMQ85605.1    GEZM01101509    JAV52620.1    GGMR01003787    MBY16406.1    GEBQ01030670    JAT09307.1    GGMS01009480    MBY78683.1    NEVH01026106    PNF14658.1    KU543673    AMS38352.1    GBGD01000881    JAC88008.1    GBHO01021814    GBHO01010549    JAG21790.1    JAG33055.1    GBBI01001646    JAC17066.1    GBGD01000880    JAC88009.1    GGMS01004444    MBY73647.1    NEVH01005295    PNF38784.1    GBGD01000799    JAC88090.1    GBHO01010547    GBHO01010546    JAG33057.1    JAG33058.1    GFTR01008251    JAW08175.1    ABLF02023279    ABLF02041474    GGMR01006491    MBY19110.1    GEDC01000337    JAS36961.1    GFTR01008151    JAW08275.1    GBBI01001570    JAC17142.1    GEZM01101506    JAV52621.1    GFTR01007997    JAW08429.1    GGMR01010373    MBY22992.1    GBBI01003810    JAC14902.1    GFTR01008169    JAW08257.1    GBBI01001699    JAC17013.1    GFXV01007093    MBW18898.1    GFXV01003078    MBW14883.1    GAKP01017773    JAC41179.1    GGMR01012443    MBY25062.1    CP012527    ALC48130.1    GFTR01008257    JAW08169.1    GGMR01000226    MBY12845.1    GGMR01000857    MBY13476.1    GGMR01000676    MBY13295.1    GGMR01018428    MBY31047.1    GGMR01003864    MBY16483.1    ABLF02042106    GFXV01002840    MBW14645.1    GFTR01008256    JAW08170.1    LBMM01012041    KMQ86458.1    LBMM01010106    KMQ87671.1    AY508487    AAS13459.1    GFTR01008269    JAW08157.1    X17551    CAA35587.1    GBBI01001642    JAC17070.1    GEZM01084969    JAV60363.1    GGMR01016114    MBY28733.1    GBGD01000389    JAC88500.1    GFTR01008254    JAW08172.1    ABLF02036794    GECL01003538    JAP02586.1    GGMR01011511    MBY24130.1    ABLF02028354    ABLF02028357    ABLF02062343    GGMR01006408    MBY19027.1    AY047531    AAK77263.1    GGMS01000737    MBY69940.1    GGMR01000005    MBY12624.1    GGMR01012305    MBY24924.1    KU543685    AMS38375.1    GFXV01000908    MBW12713.1    ABLF02016613    GBBI01003747    JAC14965.1    GGMS01008766    MBY77969.1    GFXV01005866    MBW17671.1    GGMR01006148    MBY18767.1    GBXI01011604    JAD02688.1    GGMS01012005    MBY81208.1    ABLF02017668    ABLF02021394    ABLF02055728    GGMR01012676    MBY25295.1   

Proteomes

UP000218220    UP000036403    UP000235965    UP000245037    UP000007819    UP000092553    + More

PRIDE

Q04135    Q961V7   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF07530   PRE_C2HC

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR006579   Pre_C2HC_dom       

SUPFAM

SSF56219   SSF56219       

Gene 3D

3.60.10.10    

ProteinModelPortal

A0A2A4K8E7   A0A2A4K918   A0A0J7K4E0   A0A2J7PVE7   A0A2J7R7D0   A0A1Y1M7E9   + More
A0A2J7Q9Z1   A0A2J7PSM7   A0A2J7R4U3   A0A2J7QES2   A0A2A4IUM2   A0A2P8Z520   A0A2J7PVX3   A0A1Y1K0N4   A0A2J7QB68   A0A2J7R579   A0A2J7R4B1   A0A2J7QPI2   A0A1Y1LKN6   A0A1L8DIZ6   A0A2J7R8R8   A0A2J7R098   A0A2J7RQ52   A0A2J7PMN4   A0A0J7K811   A0A2J7PDM0   J9LYS0   A0A224X6T4   A0A2J7Q0S7   A0A0J7MYU2   A0A1Y1JXT3   A0A2S2NI07   A0A1B6KCY8   A0A2S2QLY2   A0A2J7PEB1   A0A142LX26   A0A069DVA6   A0A0A9YU04   A0A023F6S4   A0A069DZC5   A0A2S2Q7E7   A0A2J7RD70   A0A069DW01   A0A0A9YJ00   A0A224X6U5   X1WVQ4   A0A2S2NPJ7   A0A1B6EGD8   A0A224X746   A0A023F7D1   A0A1Y1JWM7   A0A224XK92   A0A2S2P0Y0   A0A023F069   A0A224X724   A0A023F700   A0A2H8U0H5   A0A2H8TL70   A0A034VFD2   A0A2S2P6S3   A0A0M4EWX7   A0A224XJI0   A0A2S2N6Q7   A0A2S2N9P4   A0A2S2N814   A0A2S2PNT5   A0A2S2NH02   X1WWD6   A0A2H8TKI9   A0A224XI99   A0A0J7K7J8   A0A0J7KBP6   Q6R811   A0A224X6R6   Q04135   A0A023F754   A0A1Y1KFR3   A0A2S2PH29   A0A069DX78   A0A224XHW8   J9LBC4   A0A0V0G5B6   A0A2S2P3X8   X1XSU7   A0A2S2NPG3   Q961V7   A0A2S2PX53   A0A2S2N629   A0A2S2P698   A0A142LX49   A0A2H8TF37   X1WUG2   A0A023F0I3   A0A2S2QJM7   A0A2H8TV33   A0A2S2NNQ6   A0A0A1WW72   A0A2S2QTZ8   J9M4H5   A0A2S2P7B2  

KEGG

NA   

GO

GO:0003964  

Length:

519

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

3.35904000000001

Exp number, first 60 AAs:

0.00105

Total prob of N-in:

0.17634

outside

1  -  519

 

 

Pi

168.486964

Theta

123.732333

Tajima's D

0.682273

CLR

137.44788

CSRT

0.56057197140143

Interpretation

Uncertain