Silkworm Genome Informatics Database

Gene

KWMTBOMO00781

Pre Gene Modal

BGIBMGA000917

Annotation

reverse_transcriptase_[Lasius_niger]

Location

Bomo_Chr2(+):2883745-2887099 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.906

CDS

ATGTTTACAAAAGCACGCAGCAACTCACTCGGTACTATACCGCAAGATATCAACGTCCCTGAAATAATATTTAGTACGAAAGATCAAATCAAGCACGACTGGCAGCAGGACAGAATTCCGCCAGCCAAAAGAAAGAGAGTGGAAACCGACTCCCCACAGACTGAAAAGGTAAAGAAAAAGCCTAACACAACTACTTATGCTATTACTACAAAGAATCAATTCGATATTTTAGACAGTGAGGAATCTACAACAGACAATATAGAAATAGAAAAACCACCAAAACCAGAACCAATATTTGTTACTGGTGTCCTGGATATCAGCGCCCTCCGAAATAAATTGAAAGAAATTGCATCAGCAGACGACTACACTATGACAACACTCAAGTCAGGACACATTGTGAAAATAATGCCAGCAAGTATAGAAATATATAAATCAATACGAGAAAATTTTATCTCAGACAATATTAGCCATTACACATACATGTTAAAGAGCGAAAGACCATACAGAGTTGTACTGAGAGGCCTCCACAGCTCAGAGGATACTACTGAAATAAAGGAAAAACTCAAAAAACACGGGCACGAAGTAAGGCAAATTGTGAATGTACGCCACCGAACCTCAAAAGAACCTCTACCTTTGTTCTATGTAGACCTGGAACCCAAGCCAAGCAATAAAGATATATTTAATTTAAAATTCCTAAATCACATGAAGGTATCGTTCGAACCGCCCTACAAGAAAAAAGAAATTATCCAGTGTAAGAGGTGTCAAAGATTTGGTCACTCTAAAAATCAGTGCTACCGACCTTTCAGATGCGTCAAGTGCGGAGAAGACCACCCCACCAGCACCTGTAAAAAAACTAAAGACACAGAAGCTACATGTGCGAACTGTCAACAAAAGCACCCTGCTAGTTATAGACGATGTGTTAAATATAAACAATACAAGGAGCATATACTGAAAATACAACCGAAAAACACGCACACAAATATAATAAACAGACAAACCAGACTCCCAGATGTAGATATTCCACAACCTAAGAAATTTAGTACCAGTAATAAAAATAGACTAACTTATGCTGAAGCAATAAAATCTAAAACAGACAACATAATTAACTCAAACGAACCGCTTCAAGTGCAACAACTGGGTGACATCCTGGATAAGATGTTCAACAGAATTCAAACCATGATGATGAACATGGTAGACAACATGATGGACAGGGGCTATACTATCTACAACACTAATCATCCATCAGGAAGTGCACATGGAGGAACGGCAGTACTTATAAAATCTAACATAAAACATCACCCGCTCGAACCATTCGCGACAGACAAGATACAAGCTACACTCATCAAAGTCAGTGACAAAAGTTCGGACATTACAATTGCTGCAGTCTACTGCCCGCCCAAACCTCAGATATCACGGGAAGACTATAATAATTTCTTCTCTAAACTCGGACACCGTTATATAAGCGGAGGCGACTGGAACGCTAAACATACGTTCTGGGGTTCCAGGCTTGTAACAACTAGAGGCAGACAACTCTACCAAGCTGTTAAAGATCTCAACCTTGACTGCTTATCAACAGGTGAACCTACCTACTGGCCGACTGATCCACGAAAAACTCCTGATCTACTGGACTTCTTCATAACAAAAAATATTATAATCAATAACACCAGTGTGGAATCTGACTTAGATCTCACATCAGACCATTCTGCAGTTATTCTAAACCTGAATAATAAGATAATATTAAATGATGCACCACCCAGAATCTACAATAAAAAAACAAACTGGGAAGAATACAAAAATATTATCACAGCAGAAGCACAGCTCATAGTGCCACTGAAAACAGTAGAAGAAGTTGAACAAGCCATTGAAAACCTAAATGGATTGATCCATAGCGCAGCTAATAGGTCCACACCCCAAGGTAAAGCTAGTAGTGCTAAAGAGCATGTATACCCTGCGTTCATTAGGGACAGAGTAACTGAAAGACGTCGACTCCGCAGAGAATGGCAAAACAACCACTATAAAAGAGACAAAACTGCTTTTAATAAAGCATCGCAGCAACTAAAGGCGCTAACGAAACAATGGGCAAATGAGAACTTACAAAGTTACCTCACAAAGCTGACACCTACTAGTGACACAAATTACTCTCTGTACAAAGCTACAAAAAACATGAAGCGTCCAAAACAACAGGCTACACCTATAAAAACACAACTAGGGACCTGGGGCCGCTCCGACGGTGAGAAAGCTACTACATTTGCAGAGCATTTACAAAAAGTATTTGAGCCACCTCCCAGCAACGACCAAAGCCTAGACAATGAAATAGACGAATACTTAAGTTCTCCAAATCAGATGTGCCTACCGTTGAAACATGTCACGCTTAATGAACTAAGACGGGACATCCGAAAACTTAAACAAGGTAAATGCCCCGGCTATGATCTCATTGACGCTACTCTCTTAAAACATCTTCCAAAAAAGGGACTTCTGCTCATACTTGCTATCTTAAACGCATGTCTAAGATTATCCTTCTATCCAAGCCAGTGGAAAATAGCCCAAGTCATTATGATACAGAAGCCAGGAAAACCAGCTCAAGATGTGACATCATATAGACCCATAAGTCTTCTTCCTGTTGTTGGAAAAATACTTGAAGGGACTGTGCTAAACAGAATGCGAGAACACCTAGCAGAAATAATACCAACCCACCAGTTCGGCTTTAGAGAAGGTCACGGCACTATCGAGCAAGTACATCGTTTAGTTGATGTCATTGGGAGAGCGCTGGAAAACAAATTATATTGTTGCGCAGCCTTCCTAGACATTTCCCAGGCTTTTGACAAGGTTTGGCATAATGGGCTGCTTTACAAAATTAAAAAAAAATGTTGCCACATTCATTTTTCCCACTACTTCAATCATACCTTGTAA

Protein

MFTKARSNSLGTIPQDINVPEIIFSTKDQIKHDWQQDRIPPAKRKRVETDSPQTEKVKKKPNTTTYAITTKNQFDILDSEESTTDNIEIEKPPKPEPIFVTGVLDISALRNKLKEIASADDYTMTTLKSGHIVKIMPASIEIYKSIRENFISDNISHYTYMLKSERPYRVVLRGLHSSEDTTEIKEKLKKHGHEVRQIVNVRHRTSKEPLPLFYVDLEPKPSNKDIFNLKFLNHMKVSFEPPYKKKEIIQCKRCQRFGHSKNQCYRPFRCVKCGEDHPTSTCKKTKDTEATCANCQQKHPASYRRCVKYKQYKEHILKIQPKNTHTNIINRQTRLPDVDIPQPKKFSTSNKNRLTYAEAIKSKTDNIINSNEPLQVQQLGDILDKMFNRIQTMMMNMVDNMMDRGYTIYNTNHPSGSAHGGTAVLIKSNIKHHPLEPFATDKIQATLIKVSDKSSDITIAAVYCPPKPQISREDYNNFFSKLGHRYISGGDWNAKHTFWGSRLVTTRGRQLYQAVKDLNLDCLSTGEPTYWPTDPRKTPDLLDFFITKNIIINNTSVESDLDLTSDHSAVILNLNNKIILNDAPPRIYNKKTNWEEYKNIITAEAQLIVPLKTVEEVEQAIENLNGLIHSAANRSTPQGKASSAKEHVYPAFIRDRVTERRRLRREWQNNHYKRDKTAFNKASQQLKALTKQWANENLQSYLTKLTPTSDTNYSLYKATKNMKRPKQQATPIKTQLGTWGRSDGEKATTFAEHLQKVFEPPPSNDQSLDNEIDEYLSSPNQMCLPLKHVTLNELRRDIRKLKQGKCPGYDLIDATLLKHLPKKGLLLILAILNACLRLSFYPSQWKIAQVIMIQKPGKPAQDVTSYRPISLLPVVGKILEGTVLNRMREHLAEIIPTHQFGFREGHGTIEQVHRLVDVIGRALENKLYCCAAFLDISQAFDKVWHNGLLYKIKKKCCHIHFSHYFNHTL

Uniprot

J9LYS0 J9M0H4 J9KWJ0 J9KE07 J9LBF1 A0A1B0CFJ6 + More

EMBL

ABLF02041861 ABLF02034460 ABLF02021819 ABLF02021820 ABLF02055326 ABLF02024784 + More
ABLF02024792 ABLF02012739 ABLF02012741 AJWK01010122

Proteomes

UP000007819 UP000092461

Pfam

PF00078   RVT_1        + More
PF07530   PRE_C2HC
PF14529   Exo_endo_phos_2
PF04937   DUF659

Interpro

IPR005135   Endo/exonuclease/phosphatase        + More
IPR006579   Pre_C2HC_dom
IPR036691   Endo/exonu/phosph_ase_sf
IPR000477   RT_dom
IPR037220   BED_dom
IPR012337   RNaseH-like_sf
IPR007021   DUF659

SUPFAM

SSF56219   SSF56219        + More
SSF140996   SSF140996
SSF53098   SSF53098

Gene 3D

3.60.10.10

ProteinModelPortal

J9LYS0 J9M0H4 J9KWJ0 J9KE07 J9LBF1 A0A1B0CFJ6 + More

PDB

1WDU E-value=0.000330274, Score=108

KEGG

NA

GO

Length:

969

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.853780000000001

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00003

outside

1 - 969

Pi

282.34181

Theta

166.45662

Tajima's D

2.061254

CLR

0.924445

CSRT

0.892205389730513

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree