Silkworm Genome Informatics Database

Gene

KWMTBOMO00764

Pre Gene Modal

BGIBMGA009722

Annotation

chorion_early_B_[Bombyx_mori]

Location

Bomo_Chr2(+):2571586-2572143 View in EpiBrowser

Full name

Chorion class CB protein M5H4       + More
Chorion class CB protein PC404
Chorion protein ERB.1
Chorion class B protein PC401
Chorion class B protein ERB4
Chorion class B protein Ld32

Alternative Name

Chorion class B protein 6A2

Location in the cell

Extracellular Reliability : 2.781

CDS

ATGTTTTTATTTCAGTTAGCTTTCAGCCAATGCTTGGGTCGTGATCCTGTTATAGGATTTGGAGGTGCCTACGGCTCAGGATGGGGAGGCTATGACGCAATTAGTCCATACGATGGCTTGGGGTACGGCGTACCTTATTCAGCAGGGTTTATTGGCCTGAGTCCTAGCAATTTAGCTGCATCGTGTGGTGGTGCCCTGGCGGTCAACAGTCTCTCTCCCACCACTCCCACGGGGCTGACTGTTGCTTCTGAGAATACAATTGAGGGTAACTTGGGAATTTTCGGTCAGCTACCTTTCCTGGGTGCAGTGGCTACGGATGGTGCGTTCAGTACTGGCGGCATTGGTGCTGTTCTCTACGGTTGTGGTGACGGCGCTATCGGCATAGTTTCAGAAGCTCCTATTGTTGCACCAGCCCCGATCGGCTATGGTCAATGGCCTGTCAATGCAGGCTATAAAGGAATCGGGCCATGTGGATGCGGCGGGTTATACTGA

Protein

MFLFQLAFSQCLGRDPVIGFGGAYGSGWGGYDAISPYDGLGYGVPYSAGFIGLSPSNLAASCGGALAVNSLSPTTPTGLTVASENTIEGNLGIFGQLPFLGAVATDGAFSTGGIGAVLYGCGDGAIGIVSEAPIVAPAPIGYGQWPVNAGYKGIGPCGCGGLY

Description

This protein is one of many from the eggshell of the silk moth.

Similarity

Belongs to the chorion protein family.

Keywords

Complete proteome Reference proteome Repeat Signal

Feature

chain Chorion class CB protein M5H4

Uniprot

H9JJM1 P08830 A0A0K2S351 A0A0K2S3R0 A0A0K2S2Y2 H9JJL8 + More
A0A0K2S2X8 H9JJL4 P08930 P13532 A0A0K2S2Q6 A0A0K2S2Z1 Q17216 A0A0K2S306 Q17215 P02847 A0A2W1BH48 Q17217 P50604 A0A0K2S3P5 A0A212EY31 A0A2W1BBB2 A0A2W1BEU0 A0A2W1BGE3

Pubmed

19121390 3338621 3462711 6573656 1874417 519771 + More
28756777 6572954 7932786 22118469

EMBL

BABH01017347 AB999997 BAS21478.1 M19075 M13835 BAS21463.1 + More
BAS21485.1 BAS21466.1 BABH01017345 BAS21469.1 BABH01017349 BAS21482.1 J01160 M19077 BAS21367.1 BAS21476.1 X58450 CAA41356.1 BAS21472.1 X58449 BAS21475.1 CAA41355.1 V00077 KZ150065 PZC74148.1 X58451 J01023 CAA41357.1 U04667 BAS21470.1 AGBW02011627 OWR46409.1 KZ150197 PZC72308.1 PZC72305.1 PZC74142.1

Proteomes

UP000005204 UP000007151

PRIDE

P08830 H9JJL8 H9JJL4 P13532 Q17216 Q17217 + More

Pfam

PF01723 Chorion_1

Interpro

IPR002635 Chorion

ProteinModelPortal

H9JJM1 P08830 A0A0K2S351 A0A0K2S3R0 A0A0K2S2Y2 H9JJL8 + More
A0A0K2S2X8 H9JJL4 P08930 P13532 A0A0K2S2Q6 A0A0K2S2Z1 Q17216 A0A0K2S306 Q17215 P02847 A0A2W1BH48 Q17217 P50604 A0A0K2S3P5 A0A212EY31 A0A2W1BBB2 A0A2W1BEU0 A0A2W1BGE3

KEGG

693018 no KO assigned | (RefSeq) 5h4, BmCho-111; chorion CB early protein gene 5H4

GO

GO:0005213 GO:0042600 GO:0007275 GO:0007304 GO:0005524 GO:0006418 GO:0005737 GO:0006559 GO:0004887 GO:0016021

Length:

163

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.11689

Exp number, first 60 AAs:

0.16649

Total prob of N-in:

0.01870

outside

1 - 163

Pi

194.121348

Theta

170.994896

Tajima's D

0.429707

CLR

69.978694

CSRT

0.489225538723064

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree