Silkworm Genome Informatics Database

Gene

KWMTBOMO00743

Annotation

Retrovirus-related_Pol_polyprotein_from_transposon_17.6_[Operophtera_brumata]

Location

Bomo_Chr2(-):2033563-2038256 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.818

CDS

ATGCCGCCGCGAAAAATACGCCAACAGACGGATGACAATAGTGATTCTGGTGATGAAAAGGTGGACGCAGTGCCCTCGCCAGCACCAGTGCTCATGTCCGGGGATCAGCTGTCCTCGCTCCTGGCCGCCTTCTCAAAGTCGCAGGCCGAGGCGAACCGACAACTCGTCGAGTCCCTGTGGGCATCGCATGGTTTGGGAAGTGGATCGAAGTTCACCACCCCGATAGTGTCACCGTCCCCGACGCCAACAAGTAACATGGCTAAATGCACCGCGCGTTTTGATGGCGTCGCTCGCGATCCGGAGGCCGTTGAAGCGTTTATCGACTCTGTGGAGGTGTACAAGGAGTGTGCGTGCGTCTCCGACGATATCGCATTGCGTGGACTACCAATGCTCATGGAAGGCGAAGCAGCCATATGGTGGAGAGGGGTCCGGAACGAAGTGTCCTCGTGGCCCGACGCTCTCAAAAGGTTACGAGCTATGTATGGTGTGCCACGCCCTGCACATAAAGTTTTTCGTGACGTGTTTTCGTCTGAGCAAGGTGATGAGCTTGCTGACAGTTTCATAGTGAGGATACGTGCTATGCTGTCCAGATTGCCGTACCAGCTACCAGAGGAAGCCAGGTTAGACATAATCTATGGTCTACTTCATAAACGGATAAGGAAAAGACTACCGAGAGATGGTGTGAGCGACATAGAAACACTCATAGAGAAGTCGCGCATGGTGGAGGAGTCACTTGTGGAGTGCACGGCTGCCCCCAACATTCCGCCGCAGCCACACAAGTCGTTACCTACGGTGTTCGGCGAACGCAGCTCCGCGCCTGACGTGACAAGTGTGAGATCGCCGAGACCTGCCGGCGCCGCCGCTGCGCTAGTGCGCTCCTCCGTTGCTGTTGCACCGTCGTCGCTACCTCAACCGTCCCCATCCCCGCGTAGTGTAAAAAGCGAAACATTGGTTAAAAAGCTATTTTGTGTGTATTGCAAATCGCGTGGACATGTCCGTGATTCTTGTAACAAAATTAGTGAAAACAAATCTGTATCTTGTTATGGTTGTGGTGAAAAAGGTTTTATTAAAAGTAACTGTCCAAAATGTAACAATATTCCTAGCAATATTCAGAGTAATGTTATTAATAGAAACTCGCACGTTAAGGACAATGTATTCTATTCTGTAAATGTAAACACTTTCTCAGATTCACATTGTAATGATAAACATTCTGTCAAAAGGGGGAGTGTGTAA

Protein

MPPRKIRQQTDDNSDSGDEKVDAVPSPAPVLMSGDQLSSLLAAFSKSQAEANRQLVESLWASHGLGSGSKFTTPIVSPSPTPTSNMAKCTARFDGVARDPEAVEAFIDSVEVYKECACVSDDIALRGLPMLMEGEAAIWWRGVRNEVSSWPDALKRLRAMYGVPRPAHKVFRDVFSSEQGDELADSFIVRIRAMLSRLPYQLPEEARLDIIYGLLHKRIRKRLPRDGVSDIETLIEKSRMVEESLVECTAAPNIPPQPHKSLPTVFGERSSAPDVTSVRSPRPAGAAAALVRSSVAVAPSSLPQPSPSPRSVKSETLVKKLFCVYCKSRGHVRDSCNKISENKSVSCYGCGEKGFIKSNCPKCNNIPSNIQSNVINRNSHVKDNVFYSVNVNTFSDSHCNDKHSVKRGSV

Uniprot

A0A0L7KWD2 A0A0L7KSA4 A0A2A4JSD7 A0A2A4IXZ6 A0A2A4J1V9 A0A2A4J7C9 + More
A0A0L7KNY7 A0A1E1W9B8 A0A2A4J5Q0 A0A2A4J3G0 A0A0L7L2Z3 A0A1Y1KT42 A0A2A4JBU6 A0A2W1B5D1 A0A2A4JQE7 A0A1Y1NDK0 A0A0L7KN07 A0A0L7LED5

Pubmed

26227816 28004739 28756777

EMBL

JTDY01004939 KOB67577.1 JTDY01006541 KOB65909.1 NWSH01000724 PCG74608.1 + More
NWSH01004894 PCG64601.1 NWSH01004191 PCG65373.1 NWSH01002539 PCG68027.1 JTDY01007689 KOB65012.1 GDQN01007488 JAT83566.1 NWSH01003218 PCG66743.1 NWSH01003681 PCG65942.1 JTDY01003352 KOB69686.1 GEZM01074435 JAV64553.1 NWSH01002086 PCG69236.1 KZ150309 PZC71472.1 NWSH01000779 PCG74285.1 GEZM01007731 JAV94970.1 JTDY01008255 KOB64658.1 JTDY01001452 KOB73832.1

Proteomes

UP000037510 UP000218220

Pfam

PF00077   RVP        + More
PF00665   rve
PF17921   Integrase_H2C2
PF00078   RVT_1
PF17917   RT_RNaseH

Interpro

IPR018061   Retropepsins        + More
IPR021109   Peptidase_aspartic_dom_sf
IPR001878   Znf_CCHC
IPR036397   RNaseH_sf
IPR041588   Integrase_H2C2
IPR001584   Integrase_cat-core
IPR012337   RNaseH-like_sf
IPR001969   Aspartic_peptidase_AS
IPR036875   Znf_CCHC_sf
IPR000477   RT_dom
IPR041373   RT_RNaseH

SUPFAM

SSF50630   SSF50630        + More
SSF53098   SSF53098
SSF57756   SSF57756

Gene 3D

2.40.70.10 3.30.420.10

ProteinModelPortal

A0A0L7KWD2 A0A0L7KSA4 A0A2A4JSD7 A0A2A4IXZ6 A0A2A4J1V9 A0A2A4J7C9 + More
A0A0L7KNY7 A0A1E1W9B8 A0A2A4J5Q0 A0A2A4J3G0 A0A0L7L2Z3 A0A1Y1KT42 A0A2A4JBU6 A0A2W1B5D1 A0A2A4JQE7 A0A1Y1NDK0 A0A0L7KN07 A0A0L7LED5

PDB

6GSE E-value=0.0825897, Score=84

KEGG

NA

GO

GO:0003676 GO:0008270 GO:0015074 GO:0004190 GO:0007304 GO:0042600 GO:0005524 GO:0006418 GO:0005737 GO:0006559 GO:0004887 GO:0016021

Length:

410

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00209

Exp number, first 60 AAs:

0.00047

Total prob of N-in:

0.02756

outside

1 - 410

Pi

281.515215

Theta

195.221365

Tajima's D

2.698944

CLR

0.22271

CSRT

0.96115194240288

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree