SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO00742
Annotation
PREDICTED:_uncharacterized_protein_LOC106136109_[Amyelois_transitella]
Location in the cell
Nuclear   Reliability : 2.72
 

Sequence

CDS
ATGAGTGTGGAAAAAACAATTGCAAGTGGCAGTAGTGACCTTGGTCGTGTGGGTGTAAGGGTATCACCGTTCTACCCGGATGAACCTGCGCTCTGGTTTGCACAGCTGGAGAGCCAGTTCCTGTTGTCGAGTATCACCGCTGACTCGACAAAATTCCACTATACCTGCAGCCAGTTGGATGAAACCTACGCCTCGACAGTGGAGGGTATCATCCCCAATCCTCCAGCCAGTGGGAAGTACGAGCGACTAAAGTCAAAGTTGATTAACCGTGTTTCCAAGTCCCGTGAAAAGAAAGTCCAACAACTCCTGCATCACGAGGAACTCGTTGTGTCTCAAAAGTGA
Protein
MSVEKTIASGSSDLGRVGVRVSPFYPDEPALWFAQLESQFLLSSITADSTKFHYTCSQLDETYASTVEGIIPNPPASGKYERLKSKLINRVSKSREKKVQQLLHHEELVVSQK

Summary

EMBL
GDQN01009305    JAT81749.1    ODYU01007829    SOQ50933.1    ODYU01011787    SOQ57731.1    + More
AGBW02012433    OWR45074.1    NWSH01002598    PCG67884.1    LBMM01018126    KMQ83871.1    GL447057    EFN86960.1    KQ414874    KOC59935.1    LBMM01018089    KMQ83878.1    KL363297    KFD48322.1    KL367555    KFD64488.1    KQ981301    KYN43041.1    KQ980296    KYN16851.1    KQ414987    KOC58988.1    KQ981751    KYN36157.1    KQ980726    KYN14011.1    KL367519    KFD66949.1    NWSH01000267    PCG77880.1    KQ414761    KOC61433.1    GEZM01017686    JAV90494.1    KQ981018    KYN10257.1    KQ982338    KYQ57407.1    KQ414945    KOC59093.1    NEVH01000707    PNF43124.1    LBMM01009142    KMQ88358.1    KQ414836    KOC60371.1    AGBW02008172    OWR54062.1    LBMM01012479    KMQ86203.1    LHQN01021927    LHQN01025379    KOC58628.1    KOC58659.1    NEVH01013558    PNF28672.1    KQ979162    KYN22390.1    NEVH01011195    PNF31836.1    LBMM01012075    KMQ86422.1    NEVH01015872    PNF26409.1    GDQN01010767    GDQN01010160    GDQN01006601    GDQN01005392    GDQN01003910    GDQN01003907    GDQN01003887    JAT80287.1    JAT80894.1    JAT84453.1    JAT85662.1    JAT87144.1    JAT87147.1    JAT87167.1    NEVH01026435    PNF14140.1    NEVH01003759    PNF40011.1    KQ979048    KYN23218.1    NEVH01014357    PNF27922.1    NEVH01024424    PNF17276.1    NEVH01019603    PNF22346.1    NEVH01023981    PNF17578.1    QOIP01000013    RLU15256.1    KQ977165    KYN05204.1    KQ979103    KYN22624.1    NEVH01023305    PNF17992.1    MRZV01000023    PIK61894.1    ABLF02062577    KQ434992    KZC13185.1    ABLF02062578    KN538436    KHJ40519.1    LBMM01013103    KMQ85816.1    LBMM01012923    LBMM01012917    KMQ85926.1    KMQ85930.1    GAMC01010905    JAB95650.1    AAGJ04013171    KQ977516    KYN02153.1    MRZV01000532    PIK48263.1    KL363259    KFD50073.1    ABLF02004414    ABLF02004416    KQ434784    KZC04993.1    MRZV01001674    PIK36447.1    KQ976962    KYN06788.1    KL367562    KFD64085.1    AAGJ04018350    NEVH01000615    PNF43219.1    PNF28675.1    CH905517    KPU81804.1    MRZV01000025    PIK61772.1    CH902647    KPU77348.1    AAGJ04029894    KQ978092    KYM97057.1    KQ980730    KYN13990.1    KL367492    KFD69853.1    KL367573    KFD63419.1    ABLF02032144    KL363185    KFD58079.1    NEVH01017547    PNF23930.1    MRZV01000197    PIK55880.1    KFD66946.1    LKEX01009256    KYN50060.1    KL367547    KFD64927.1    AAGJ04088930    AAGJ04032598    NEVH01005285    PNF38969.1   
Pfam
PF00665   rve        + More
PF00078   RVT_1
PF17919   RT_RNaseH_2
PF17921   Integrase_H2C2
PF00498   FHA
PF00077   RVP
Interpro
IPR021109   Peptidase_aspartic_dom_sf        + More
IPR001995   Peptidase_A2_cat       
IPR041577   RT_RNaseH_2       
IPR001584   Integrase_cat-core       
IPR012337   RNaseH-like_sf       
IPR000477   RT_dom       
IPR036397   RNaseH_sf       
IPR041588   Integrase_H2C2       
IPR000253   FHA_dom       
IPR008984   SMAD_FHA_dom_sf       
IPR001969   Aspartic_peptidase_AS       
IPR034132   RP_Saci-like       
IPR018061   Retropepsins       
SUPFAM
SSF50630   SSF50630        + More
SSF53098   SSF53098       
SSF49879   SSF49879       
Gene 3D

Ontologies

Topology

Length:
113
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00247
Exp number, first 60 AAs:
0.00247
Total prob of N-in:
0.24458
outside
1  -  113
 
 

Population Genetic Test Statistics

Pi
269.165603
Theta
105.952743
Tajima's D
4.831904
CLR
0
CSRT
0.999950002499875
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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