Silkworm Genome Informatics Database

Gene

KWMTBOMO00739

Pre Gene Modal

BGIBMGA003249

Annotation

chorion_class_A_[Bombyx_mori]

Location

Bomo_Chr2(-):1874761-1876515 View in EpiBrowser

Full name

Chorion class A protein Ld2/Ld41

Location in the cell

Extracellular Reliability : 3.307

CDS

ATGGGTCGCTGGTACTTTATGTGTTTGTTGGGTCTTTTCGCTCAGAACGCTCTTTCCCAAGTACTTGGAAACCCGGGTTGCGCTTGCAACGTTCGTCAGCCATATGCTGGAAATGTGGGGTGCAATGCCCCGTGTGGTGGTCCAGCTGGCTACGGCGATGTGGCCGTGTCGGGTGAATTGCCCGTGGGTGGCAACACTGGCGTCTGCGGGAACGTGCCTGTAGTGGGATATGTGATGTTCGAGGGTACAGTGCCGGCTGGAGGATTGGTGAGCGTGGCCAACAACTGCGGATGCAACGGTCCTGCGTATTAA

Protein

MGRWYFMCLLGLFAQNALSQVLGNPGCACNVRQPYAGNVGCNAPCGGPAGYGDVAVSGELPVGGNTGVCGNVPVVGYVMFEGTVPAGGLVSVANNCGCNGPAY

Similarity

Belongs to the chorion protein family.

Keywords

Repeat Signal

Feature

chain Chorion class A protein Ld2/Ld41

Uniprot

H9J162 A0A0K2S2P4 A0A2A4JZ20 A0A194Q703 A0A2W1BHQ4 P0C0U2 + More
P0C0U3 A0A0K2S2W2 A0A0K2S2Z6 H9JJC7

Pubmed

19121390 26354079 28756777 7932786

EMBL

BABH01031336 AB999997 BAS21365.1 BAS21366.1 NWSH01000343 PCG77257.1 + More
KQ459460 KPJ00780.1 KZ150197 PZC72310.1 U04658 U04670 BAS21368.1 BAS21462.1 BABH01042128 BABH01042129

Proteomes

UP000005204 UP000218220 UP000053268

PRIDE

H9J162 H9JJC7

Pfam

PF01723 Chorion_1

Interpro

IPR002635 Chorion

ProteinModelPortal

H9J162 A0A0K2S2P4 A0A2A4JZ20 A0A194Q703 A0A2W1BHQ4 P0C0U2 + More
P0C0U3 A0A0K2S2W2 A0A0K2S2Z6 H9JJC7

KEGG

101736564 no KO assigned | (RefSeq) BmCho-1; chorion class CA protein ERA.2-like

GO

GO:0042600 GO:0007275 GO:0005213 GO:0007304

SignalP

Position: 1 - 19, Likelihood: 0.999619

Length:

103

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.46994

Exp number, first 60 AAs:

0.13765

Total prob of N-in:

0.12051

outside

1 - 103

Pi

304.03774

Theta

159.951716

Tajima's D

2.756941

CLR

0.248829

CSRT

0.964951752412379

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics