SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO00727
Annotation
PREDICTED:_uncharacterized_protein_LOC106131084_[Amyelois_transitella]
Location in the cell
Extracellular   Reliability : 1.568 PlasmaMembrane   Reliability : 2.143
 

Sequence

CDS
ATGTCTCATCCGGATGTGACGTCAGCGCCAAGTTCTCCCACCCCGGAAGCATGTCCAGAATGCGACGCAACTGCTTCTGTAACTTCAGATCTGCACAAGTACCAAGTGGCCTGTACTTGCAAGCCGTCATCGGCACAGTACGCTAGCGCTGACGACCCTGGCGCTCCTCCACCAGCGAAGATTGACACGCCGCCTGCCCTACCACCGAGACCTCCTACAAGCGTGCTTGCTTCCACCAGACGAACCAATGCATCAGTGGGATGCAACAATGAAGCAAGTGGTCGTCGTAGAAAGTACGCCTGGTGGTGCGTCGGCTGCGGCGCCTTGGCAGCGGCTCTCGGAGGCCTGTTGGCTGCCCAGCATATCCTACTGAGGGCCTATACAGCATCACCGCAGCATCTGGAGACGGTGCCGGCGGCTGTACCGGCGGCCATGTTGGTGTTGACCGGCGTGTGCATCATGAGCCTCGCGCGACGGAGGAACCGTTACAGCTACATGGTAAGAAAAATCAAAGTTGTGGGCGCTTGCTGTCTGGTCTGCGCCTTAACTTGCGTCCTGGTGACGATAACGACAACTGTAATACATATGAACAAATTGCAGACGCTGAAGTCTTGCGAGTATACCAAGCTGACCCGTACCTGCACTTGTTATTCGATGCTACCAGGCACCCAGCACAGCGGCAGCGAAGATGACGGGGTGCGCTGCGTCTTCGAAGGCGTCACGGACTGCGGCGTGGTCCACGGCGCGCTGTACTGGTGCTTGAGAGGAGTCTTCGCCCTCTCAGTCAGCGCTGTGCTCGTCTGCATCTTCAGCTGCATGCTGGCTTATCAACTGCTGAGAAACATAAATACACAGTAA
Protein
MSHPDVTSAPSSPTPEACPECDATASVTSDLHKYQVACTCKPSSAQYASADDPGAPPPAKIDTPPALPPRPPTSVLASTRRTNASVGCNNEASGRRRKYAWWCVGCGALAAALGGLLAAQHILLRAYTASPQHLETVPAAVPAAMLVLTGVCIMSLARRRNRYSYMVRKIKVVGACCLVCALTCVLVTITTTVIHMNKLQTLKSCEYTKLTRTCTCYSMLPGTQHSGSEDDGVRCVFEGVTDCGVVHGALYWCLRGVFALSVSAVLVCIFSCMLAYQLLRNINTQ

Summary

Ontologies

Topology

Length:
285
Number of predicted TMHs:
4
Exp number of AAs in TMHs:
89.65985
Exp number, first 60 AAs:
0
Total prob of N-in:
0.99987
inside
1  -  99
TMhelix
100  -  122
outside
123  -  136
TMhelix
137  -  159
inside
160  -  171
TMhelix
172  -  194
outside
195  -  256
TMhelix
257  -  279
inside
280  -  285
 
 

Population Genetic Test Statistics

Pi
244.498703
Theta
164.838236
Tajima's D
1.750745
CLR
0.267909
CSRT
0.83810809459527
Interpretation
Uncertain
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