SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO00716
Pre Gene Modal
BGIBMGA003263
Annotation
PREDICTED:_R3H_domain-containing_protein_2_isoform_X1_[Bombyx_mori]
Location
Bomo_Chr2(-):1168782-1202044      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 4.102
 

Sequence

CDS
ATGGATAAGTCCGAGTTGGAGAAGTACTCGACTGGCCACGATGATGTCAGCCAGCTGACCAGGACCAGGAGTTTCAAGTCAAAACAGCTAGTTCGCAGTCAAGCGATCAGGGAATCTCAGTCTCCGCCCAGGACGGTGTCGCCGTCAGCGCGCCCAGACCACACCGAACACAGCAGCAACGTTATAAACGACGAGAGCGTTTACAAAAATAACGAGAGCGCTTACAAAAATAACGAGAGCGCTTACAAAAATAACGAGAGCGCTTACAAAAATAACGAAAGCGTTCACAAAAATAACGAAAGCGTTTACAAAAATAACGAAGGAGTTCATAAAAATAACGAAAGCGTTTACAAAAATAACGAATGCGTTTACAAAAATAACGAAGGAGTTCATAAAAATAACGAAATCGTTTACAAAAATAACGAAGGAGTTCATAAAAAGAACGAAAGCGTTTACAAAAATAACGAATGCGTTTACAAAAATAACGAAGGAGTTCATAAAAATAACGAAATCGTTTACAAAAATAACGATAACGAATACAATACTAACGTTATAACGGTAGATGAGAACGTTGCGCAGAGAACGGTCGACAATAAAACCGAAGTTAATTCTAGTCATAACGATAGATGTAGCGATGTTAATAAATATAGCATTAACGATTATAACGATTACAAAAAGAAGCAGCCCGTCGAGATACAGATCACCTCCGGCGGCTGGGACCTAGAGTCGCACATGGAACAACGCCAGAGGACCAAACGCTGGCTCGGACAGAAGAACTTGTCGGAGTCCACGCGCGACCTCCTCTCTAACAGCCCTCGCGTGGCCTGCGTCTGCGGATCCTGCGCTGCTTGTCCTCAGTGCAGGGGTCGCAGACGCAGACGCACGTGTCCCATCAAGCAGGACTCGGGGATCGTGTGCTCTGACGACTGCCCAGATTGCTTCGAACCAGACAATTCAGTGCTCAACGAGGGTACTCGGAAATCTGCTTCGGTAGACACCGACGACCAAGCATACGTCTGCAAATGTCCAGAGCGCAAAGACTTCAAGTCAAAGAGCGCATCCTTGAGCAGAACCGATTCCGATGACAAAACAGAACCCAGCGGACCTGAGCTGGTGGACTTCATTAAGGAAACGCTGAACAAGAACCAAAAGGACCGCGCCACGCTACTGAAGATAGAGAAGGAGCTTCACGCTCTGGTGACAGACACGGGTCGGTGCATAGTTCGCTTTCCGGTGATGACGTCATACGGGCGGATGCTGGTGCACCGCTGCGCCGCCCTGTTCCAGCTCTCGCACAACCTCGACCACACCAGCAAGAACTCCGTGCTCGTCTCCAAGAGCGGTACGAGCGGCGGGCGCGTCCCCTGCACCGCCTTCCGCGCCTGGTGCTCCGCCGTGTTCCCGCCCTCCTCGCCGCACGGACCGCACGGACCGCACGAGCCGCACGCGCCGCACGAACCGCACGCGCCGCACGCCAAGTCGATCCTGAAGCGCGCCAGCCAGTCCCTGGACGAGGGGGGTGCGGGGCGGGCGGCGTCCCGGAGCAAGTCGCTGGAGCAACGCGAGCGGGAATACGAACGGGTACGCAGGAGGATATTCAGCTCTGACAACTGTGCGCAGGACGAAGCCGCGTGGCCCTGGAACGCTGGTCCCATCAAGGTACTGACTCCTGAATCCGGCAGGAAGCAACTCCTCAAGGTGCAGTCGCTGGAGAGCTCCTCGTCCGGCGGCCCGTCGTGGCGGAGTCGCGGCGCCGTGTCCAAGAGCCACAGCTTCAGCGGAGCCCCGCTGCACCAGCACAGGATACTCAGCAGGCAAGGGGACCTGGCCTCCAGCAGCTGGCGCCTGTCTCCGTCGAGCTCCGGATACAAGACCCTGAGTTTGAGGAGTACAGATTCCGTGACTCCCTCCCCGACTGGCGGTGCCAGTCCGGAACCAGCCCCGGTCCCGGGTCCACCGCCGGGTCCCGCCCCCGGGACCCTGGCGGCGAGCATGCCGGGGACCATACCCGGGACCGAGGTGCTGTGGGCCGTCACGGACATGTCCGCCGTGCCGCCCGGGGCGATCGTGATACATCCCCAGACCGGACGTCCTCTCACGAATTCAGACGGCAGCATCTACCACTTCGATCCGGCGAATCCGCCCATCGTATACGATCCCAGCGCCTACATACAGGACGGACACGCGGACCCGCCCCAGGATGACGCGTCCGAGAGGAGACGCGGCAGACTTGAGAAGCAGCACTCGTTCATTGACCACGAATGTGAGTGTCAGCCGTCGGAGGACGGTCGGAAGTGCTACTGCGATTGGAAGCGTCAGGAGCCTTACCAGCAGAGGACCACCGCGGATAAGGAAACGAACACAAAGCAGCAGACACCGGTCAAAACTCGCCAGGAGAGCGCCAACGACCGCGTCCACGAGCCGGCCAATCAGAATGCAGCGTACGAAGCGTCGACCAATCAGAAGGCGCCCGAACATCAGCACGCGCACCAGCCGACCAATCATAGACAAGCGTACGAACACCAGTCGAACGAACACGACGGACAGAGGAGCTACGAAGCGAGAGATTCGTTCGCCAATCAGCGTTCGCTGTCGGAAGTGAAGCCATCGAACTTGACCAATCAGGACAGCTTAGAGATGTCGCAGCAGCAGCACTACCCGCCCGGCTTCAGGAGCGAGGAGATAGCTTCCCCCTCTCAACCCATGAACCAGTATTGTCAACAAGACTACAACATGCAGCAGATGGCGCAACAGAAGGCTGTCCCCGTTGAACCGAATATCAGGTCGCTGCCCGCGCGCGGCGTGCTGTACCCGGCGCAGCTGCAGGGCTGTCCCTACGTCGCGCAGTGCAGGATGGAGCAGCCCATGCCGCCGGTGTACCAGCCGGCGCTCCCGCAGACTGACGAGCAGAAGCACCTGGCGGCTTCCCCACACAATCCAGAGAACACCTTCAGGATCGACCCTAGTTATCCGTACGGGGCGGAGTACCCGGGCGCCGCGTGCGGGGCCTGCGTCGAACCCACTGGCATACAGCACGCGCACAGGAGCTACAACGTGCCCTACGCTGAGCTGCCGCACTACTCGCTTCAGAACCTCGTGCTGCAGCAGCCCCACCTCCAGCCCTACCCCTACCAAGAACAGCTGCAGTGGGCGGCGGTGGGCGCGCCCAAGCTGGTCATGCCGGATCTATACCCGATGCTGCACTACAACGTACCGTACCCACAGTACAACGTCATGTACCCGCAGATGCTACCACAGACTTACCCGATGTGTCAGCCCGTCTACCCGCTGCTAGAGAAGCCAGACAACCCTCAGCGAAGCTTCACCAAGAAACAGACCTCCGTGCCCAACTCCTGCCGCAACACCCCCCTCGCCACCCCGCCGGTGGAGCGGGGCGAGCCCGAGCGCGGCGCCGAGATATCCGACAGGATACAGCAGATCAAGGAGCAGATGGCGCAGATGTCCACCCGCGACAAGAGAAAGGACGACTGGAGGAAGAAGAACTACGGGAACGGAATCCTCGGCAGCTACCCGAGTGGCAACTACGGCGGGAGATCTACAGGGAGACCTTCGAACGAATCACAGCTGAGCAAGGAGGCCCGCGTCATCGTCAACTCCATAAGGAATATGCACCCTAAAAATACATATCATCAGGAGGGGCGCAGAGAGCAGGAGGGGCCGCGCGGGCCCCCCGGCAGGCGTTCCGACCGGGATGACAGGAGCTCCTCCTACCGACCCCAGTACTTCATCAGACAGATGTCTCCGGGGACGTGGTGCAGACGCTCTCCCGGACCAGTTCATCCAGTATTAAACAACCCCGGACGTCCCTCCCCGGATTCCAGGGGGGGTCGCCGCCCCCATCACGGCTCGGGCCCCCGGGCCGCGCCACACCTGCACTCCTGA
Protein
MDKSELEKYSTGHDDVSQLTRTRSFKSKQLVRSQAIRESQSPPRTVSPSARPDHTEHSSNVINDESVYKNNESAYKNNESAYKNNESAYKNNESVHKNNESVYKNNEGVHKNNESVYKNNECVYKNNEGVHKNNEIVYKNNEGVHKKNESVYKNNECVYKNNEGVHKNNEIVYKNNDNEYNTNVITVDENVAQRTVDNKTEVNSSHNDRCSDVNKYSINDYNDYKKKQPVEIQITSGGWDLESHMEQRQRTKRWLGQKNLSESTRDLLSNSPRVACVCGSCAACPQCRGRRRRRTCPIKQDSGIVCSDDCPDCFEPDNSVLNEGTRKSASVDTDDQAYVCKCPERKDFKSKSASLSRTDSDDKTEPSGPELVDFIKETLNKNQKDRATLLKIEKELHALVTDTGRCIVRFPVMTSYGRMLVHRCAALFQLSHNLDHTSKNSVLVSKSGTSGGRVPCTAFRAWCSAVFPPSSPHGPHGPHEPHAPHEPHAPHAKSILKRASQSLDEGGAGRAASRSKSLEQREREYERVRRRIFSSDNCAQDEAAWPWNAGPIKVLTPESGRKQLLKVQSLESSSSGGPSWRSRGAVSKSHSFSGAPLHQHRILSRQGDLASSSWRLSPSSSGYKTLSLRSTDSVTPSPTGGASPEPAPVPGPPPGPAPGTLAASMPGTIPGTEVLWAVTDMSAVPPGAIVIHPQTGRPLTNSDGSIYHFDPANPPIVYDPSAYIQDGHADPPQDDASERRRGRLEKQHSFIDHECECQPSEDGRKCYCDWKRQEPYQQRTTADKETNTKQQTPVKTRQESANDRVHEPANQNAAYEASTNQKAPEHQHAHQPTNHRQAYEHQSNEHDGQRSYEARDSFANQRSLSEVKPSNLTNQDSLEMSQQQHYPPGFRSEEIASPSQPMNQYCQQDYNMQQMAQQKAVPVEPNIRSLPARGVLYPAQLQGCPYVAQCRMEQPMPPVYQPALPQTDEQKHLAASPHNPENTFRIDPSYPYGAEYPGAACGACVEPTGIQHAHRSYNVPYAELPHYSLQNLVLQQPHLQPYPYQEQLQWAAVGAPKLVMPDLYPMLHYNVPYPQYNVMYPQMLPQTYPMCQPVYPLLEKPDNPQRSFTKKQTSVPNSCRNTPLATPPVERGEPERGAEISDRIQQIKEQMAQMSTRDKRKDDWRKKNYGNGILGSYPSGNYGGRSTGRPSNESQLSKEARVIVNSIRNMHPKNTYHQEGRREQEGPRGPPGRRSDRDDRSSSYRPQYFIRQMSPGTWCRRSPGPVHPVLNNPGRPSPDSRGGRRPHHGSGPRAAPHLHS

Summary

Uniprot
A0A2W1BDG0  
Pubmed
28756777   
EMBL
KZ150190    PZC72421.1   
Pfam
PF01424   R3H
Interpro
IPR036867   R3H_dom_sf        + More
IPR001374   R3H_dom       
SUPFAM
SSF82708   SSF82708       
Gene 3D
3.30.1370.50    
ProteinModelPortal
A0A2W1BDG0  
PDB
1WHR     E-value=2.30865e-12,     Score=180

Ontologies

KEGG
101745325    K02360 a component of the cytoplasm (encore) | (RefSeq) R3H domain-containing protein 2
PATHWAY
04320    Dorso-ventral axis formation - Bombyx mori (domestic silkworm)
GO
GO:0003676   GO:0004482   GO:0005524   GO:0006370   GO:0019012   GO:0016021   GO:0050661   GO:0006559   GO:0004887  

Topology

Length:
1300
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.0002
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00000
outside
1  -  1300
 
 

Population Genetic Test Statistics

Pi
302.173011
Theta
162.021353
Tajima's D
2.724485
CLR
0.214571
CSRT
0.96195190240488
Interpretation
Uncertain
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