Silkworm Genome Informatics Database

Gene

KWMTBOMO00714

Pre Gene Modal

BGIBMGA003264

Annotation

PREDICTED:_uncharacterized_protein_LOC106124102_[Papilio_xuthus]

Location

Bomo_Chr2(-):1086637-1130124 View in EpiBrowser

Transcription factor

Homeobox

Location in the cell

Nuclear Reliability : 4.109

CDS

ATGTACCGACGGCAGTCGAGCGAGGACGATAAGCCCTTGGAAATAGACCAGGACTCCAACCCGGCCAGCAGATCAAACTCCCCGAAAAACATGAGCTACTACGAAGAGAAGACAGTCCTCAATCAGACCAAGAAGTCTTTTTGCATAGACGCCTTACTCTCCCGCCAGTTGGAACCTAAATCCCCAAGCGCCGATCCAGGGTTCCCGAAAAACTACATCAACCGTTACCAGGCAAATTACGATGCCCAAATCGAACAGAACACGATAAATAAGTACGATAATTCCAGTCCAAGGTCTGGACAGAGCAGCCCCAGGAGCGTCAGTCCAGGGTCTGATGAGGGAAACCGATCGGAGACGTACAGCCCCCCGATATCTCCCGGCGTCGAAGGCAGCAGTGAAGACTATGAGAGCTATAGACCAGGAATAATCCCAAAGCCGGGACTAATACCACAGAATCCGGCGCTGATGGCGGCACAATCTGCAGCCCTTTTCAACTACCCACAGCTCCAGCCCGGGGGTCTACCTCCCGGGGCGCCGATGCCCTCCGCCTTCCACCACCCTGGGGACAGAGTCCTGCACCACATGCAACTCGAGTGGCTCGCAAGAACTGGAATGTTTTATCACAGGATACCGGAATTAGGAGGTGCCCCTCACGCGCTTCTAGGCAAGACTCGGCGACCCCGCACCGCCTTCACGTCTCAGCAGCTTCTGGAACTGGAGAAGCAGTTCCGAATGAACAAGTACCTGTCCAGACCGAAACGGTTCGAGGTGGCCACCAGTCTGATGCTCACGGAGACTCAGGTAAAGATCTGGTTTCAGAACCGAAGGATGAAATGGAAAAGATCGAAAAAGGCCCAACAGGACTCTAAGAACAAGGACCCTCAGCATTCAGACGAGAAAAACAAACCGAAAGAGCAGACGGACGCGGAGAAGACATTGACAGCTGATCTGACAGCTGTCAAACCGCCGCCGATGCTCGACAGGGACAGAATTATCGCGCTGGAACGAGAAAGAGCGATGGCGGCCGCTAATTTTAATTCGAATCTGGAGAATCGACGCGGATTGGTCGTGATGTCTCAAGATGGCAGCCGACCCGGAATCGACATGTTCAGGCCGTACGTGGTATGA

Protein

MYRRQSSEDDKPLEIDQDSNPASRSNSPKNMSYYEEKTVLNQTKKSFCIDALLSRQLEPKSPSADPGFPKNYINRYQANYDAQIEQNTINKYDNSSPRSGQSSPRSVSPGSDEGNRSETYSPPISPGVEGSSEDYESYRPGIIPKPGLIPQNPALMAAQSAALFNYPQLQPGGLPPGAPMPSAFHHPGDRVLHHMQLEWLARTGMFYHRIPELGGAPHALLGKTRRPRTAFTSQQLLELEKQFRMNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSKKAQQDSKNKDPQHSDEKNKPKEQTDAEKTLTADLTAVKPPPMLDRDRIIALERERAMAAANFNSNLENRRGLVVMSQDGSRPGIDMFRPYVV

Uniprot

A0A2W1BCZ6 A0A194PT12 A0A2A4J8A9 A0A194QZI1 A0A1W4WY48 D6WRD3 + More
A0A1A9UVS5 A0A1A9WCE5 A0A0A1WIY0 A0A034WPP6 A0A1A9ZMQ5 A0A1A9XHV5 A0A1B0AQ53 W8C321 A0A0K8UU54 A0A0K8U8N0 A0A0L0BMQ2 B4QKY9 B4PCC9 B3NF75

Pubmed

28756777 26354079 18362917 19820115 25830018 25348373 + More
24495485 26108605 17994087 17550304

EMBL

KZ150260 PZC71755.1 KQ459593 KPI96452.1 NWSH01002678 PCG67690.1 + More
KQ460890 KPJ10862.1 KQ971351 EFA06552.1 GBXI01015807 JAC98484.1 GAKP01002787 JAC56165.1 JXJN01001678 GAMC01002917 JAC03639.1 GDHF01022117 JAI30197.1 GDHF01029300 JAI23014.1 JRES01001632 KNC21326.1 CM000363 EDX09622.1 CM000159 EDW93814.1 CH954178 EDV50417.1

Proteomes

UP000053268 UP000218220 UP000053240 UP000192223 UP000007266 UP000078200 + More
UP000091820 UP000092445 UP000092443 UP000092460 UP000037069 UP000000304 UP000002282 UP000008711

Pfam

PF00046 Homeodomain

Interpro

IPR001356   Homeobox_dom        + More
IPR017970   Homeobox_CS
IPR009057   Homeobox-like_sf
IPR020479   Homeobox_metazoa

SUPFAM

SSF46689 SSF46689

CDD

cd00086 homeodomain

ProteinModelPortal

A0A2W1BCZ6 A0A194PT12 A0A2A4J8A9 A0A194QZI1 A0A1W4WY48 D6WRD3 + More
A0A1A9UVS5 A0A1A9WCE5 A0A0A1WIY0 A0A034WPP6 A0A1A9ZMQ5 A0A1A9XHV5 A0A1B0AQ53 W8C321 A0A0K8UU54 A0A0K8U8N0 A0A0L0BMQ2 B4QKY9 B4PCC9 B3NF75

PDB

2ME6 E-value=3.99299e-16, Score=207

KEGG

101745466 K08025 homeobox protein HB9 | (RefSeq) homeobox protein Hox-B4

GO

GO:0005634 GO:0006355 GO:0043565 GO:0048812 GO:0021520 GO:0003677 GO:0007417 GO:0007412 GO:0061101 GO:0004420 GO:0008299 GO:0016021 GO:0050661 GO:0006559 GO:0004887

Subcellular location

Nucleus

Length:

375

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01545

Exp number, first 60 AAs:

0

Total prob of N-in:

0.04818

outside

1 - 375

Pi

224.984644

Theta

147.601486

Tajima's D

1.918338

CLR

0.477761

CSRT

0.870456477176141

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics