Silkworm Genome Informatics Database

Gene

KWMTBOMO00712 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA000204

Annotation

PREDICTED:_paired_amphipathic_helix_protein_Sin3a_[Bombyx_mori]

Location

Bomo_Chr2(+):981105-1025409 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.924

CDS

ATGATGAAACGCACGGGCGTACCCCGGCTCGGTCCTGATGAACCGTCACCTTTGCAGGCCCAGAATGCAGCCCAGCTACAACAAGCAGGCGCCAGTAGTCTTCATTCGCTGGCACAACCACACAGCCAACCTATATTAAACTCGAACGCGCTGGTGTCAGTTGGAGGGTTCGGTCGGGGCTCTCGGGGGGCGGCCCCCGTGCTGGGCTACATGAAGCCGGGCGCGTTGCAGTACGCGCCCCCCAAACAACCGCCACCGCAGATGACGCCCAGGATCAAGGCCGTGCAGCCCCCGGTGCCGCCCGCGCAGCCCCCCGCGGCGCCCCCGCAGGCCGGCGGCGGCGTGGCGGCCCCCCCCGCAGGCGCGCAGTCCCCCGGCCCGCAGACGCAGTTCCAGCGGCTCAAGGTGGAGGACGCGCTCTCCTACCTCGACCAGGTCAAGTACAAGTTCAACACGCAGCCGCAGGTCTACAACGACTTCCTCGACATCATGAAGGAGTTTAAGAGTCAAACAATCGATACGCCGGGAGTCATCACCCGGGTATCGAACCTGTTCAAGGGGCATCCGGAGCTGATTGTGGGCTTCAACACTTTCCTACCTCCCGGGTACAAGATTGAAGTTCAGAGTAATGGCCAGGTGTCAGTATCGATGCCGTCGCCGACGGCCATTGGCAGCGGCGTCCTGCTGGGAGTACATCACACGCAGCAACCGCAGCTAGTTCACTTGTTACCTGTTCCGCATGCAGAGGAGTGTCGTCCCGTCGGGCCGGCGCTGCAGCACCTGTCCCACGCCGCGCCCGACCCCGCCCTGCACCACGCCACCGGGCCCCCGGTCACCCCGACGCCGACTGCTCCCCCCGGACAACCAGTCGAATTCAATCACGCCATTGAATACGTTAACAAGATAAAGTCCCGTTTTTCCCGTCAACCGGACAAGTACAAGCGTTTCCTGGAGATACTGCACGCGTACCAGCGCGGACACCGCGACCTCAAGGAGCCTCAAGCTAAACAACAAACGGAGCAAGAGGTTTACTCGCAGGTGGCTAAACTATTTGAACATCAAGAGGATCTGCTGGCGGAGTTCGGCCAGTTCTTGCCGGACGCTAAGGCCGTTACCAAGCCAGAGCCTGCCCATGAACATCATCCTTTTTCTCCGGGTCAACCGCCGCGTGAGGTGGAGCCCGAGCGCTTTGCCCCCGCCGTGCAGCCAGAACCTGCTCCAATGCACTTACAGCACGCTCTAGTTCCAAAGCATGTGACTACCCCGCCGGCTGTGGTACAGCATCCGCAGCATCATCACCTCAAGAGATCTCCGAGTATCTCATCGACAGGTCAACCGTCGTCAGCCCCGCCGCCCGCCAAGAAGCCGCGCGCGTCGTGCTTGTCGGGCGCCACGGTGCGCGACGTGTCGTACTCGGAGGCGGCCAAGCTGGCCACCATCCACGACTACAGCTTCTTCGAGCGGGCCAGGAAGGCGTTGCGCTCGCAGCAAGTCTACGATAACTTTTTAAGATGCCTGCTCCTGTTCACGAACGAAATAATATCATCGTCGGAGTTATTGTCAGTGACGAGTCCGTTCCTGTGCCGCCACCCGGAGCTGCAGCGCTGGCTGCACGACTTCGTGGGCCCGCCCTCGCCGCCGCACACCCCCACCCACACCCCTAATACGGGCTACCCTTGGACCAACCCTATACCGGTGGAGCCCCGCCCTCGGTACGAGAGTGTCGGCGCCCTCGGGGCACAGATGCGAAATGATCGCCCCCAAGGAGACATGGCAATGGATATTGATCTATCGACGTGCAAGCGTCTCGGCACGTCGTACTGCGCGCTACCTCGCGAGGCGGCCGCCAGGAAATGCTCGGGACGGACGCCGCTCTGTAAAGAAGTACTTAATGATACATGGGTGTCGTTCCCGACATGGAGTGAAGACTCGACATTCGTAACATCAAGAAAAACCCAGTATGAAGAATACATTTACCGTTGTGAAGATGAGAGGTTTGAGCTGGACGTGGTTATAGAAACAAACGCCGCCACCATCCGAGTGTTGGAGGGCGTGCAGAAGAAGTTGTCCCGCATGTCGGGCGAGGACGCGGCGCGGTACCGGCTGGACGACTGTCTCGGCGGACACTCGCCCACCGTGCACCAGAGGGCGCTGCGACGCATCTACGGCGACAAGGTGGCAGTGGACATCATTGCAGGCCTAAAGAAAAACCCCGTTGTCGCTGTACCTGTTGTACTGAGGAGGTTGAAAGCTAAAGAGGAAGAATGGAGAGAGGCTCAGAAGGGCTTCAACAAACAGTGGCGCGAACAAAACGAAAAGTATTATTTGAAATCTCTCGACCATCAAGGGATCAACTTCAAGCAGAACGATCTGAAGGCGATGCGCTCGAAGACTTTGTTCAACGAGGTAGAGAGCGCCTACGCGGCCCGCCGTCCGGGGCCGCACCTCGTGGTCGACTACAACATGCAGAGCCGACAGGAAGCAATAAAAATTGTTCGAGACACCGCGGAGCTCCTTATACATCACGCCAGGAGACAAACTGCTATACAGAAGGCTGAGAAACGGAGAATCAAACAGTTGTTAAGGCATTTCCTACCCGATCTCTTCTCGCATCCACGGCAGCCGCTATCTGATGATGAGAAGGATGAAGAAGACAAGGAGGATGCACCGAGCCCGGAATGTCCAATCGATCAACAGGGTCAAGAAAATGACAAGAATAATTTAAAACAAGAAATAAAACAAGAGTCATCTGAATCTGATAACGCGTCAGACAAGAGCGGCAAGAACGGAAAGAATAACAAAGAGAATAAACCCAAAAATAATAATAATTTGGAGAGCAATAAAGAAAGTGTACTAACCCAGCCGACTAATGGAAAGAGGTTAAGCAATGATGATCAAATACTGAAATCTGACTTAAAGACTGAACCATTCGAAGTAGAAGATGATCTCAGGGATCACCCCCCTAATGAGGGCAGGTTCGTGTGCACGTCCTCGTGGTACCTGTTCCTGCGCGTGCACGGCGCGCTGTGCCAGCGGCTGGCGGCCGCGCGCCGGGCCATGTGCGCCGCGCCGCCCGCCCGCCCGCGGCACGACCGCCCTCCCGCGCTCGCCCTGCGCCTCGCGCCCGCACACCATTTGCCAGCGGACGTGTCGTCGCCAACAGAATACTACAACTTGTTGCTGGACCTGGTGAAGGGCGTCCTCGACGGCAACATGGAATCTTCCGCCTTCGAGGATGCAGCCCGAGAAATGCTCGGGATCAAAGCCTATCCGGCCTACACGCTGGACAAACTGGTGTCTATCGCTGTCAGGCAGCTGCAGCACTGCGCGTCGGAGCCGTGGTCGGTGCGCGCGGCCGAGCTGTGCGCGCGCGACATGCGGGCCGCGGCCGGGCCCTACGTGCGCCGCGCCCTCGCCGCGCTGCGCCCGCACCACGCCGCCTTCCTCGTGCGAGCGTACGGTGGAGACGAGTGTAAAGTAACATTTGAGCTGCTAGAAAGCGCTGGAGAAGGAAGGACGTCCCCACACAACAACGACAACAGAATGTCACCGACAGCACAGCGCACGAGTGGAGGTGTGGGCGGAGTGAAAAGTGTCGGCGAAGGCGAGGCGGTGTCCCGGTGCGCGGCCTGGTCGCTGTACGCCGAGCGGTTCGCCAGCAACAAGACCAGCGGCGTGACGGCGCGCGGCAAGCCCGTGTTCCTGGCGCGCAACGCACGCGCACGCGGCCTGCACGCGCCCGCCAACACGTCGCGCTGGCCGCAGCCGCCGCGCCGCCCCGCCCCGCGCCGCAAGCCCGCCGCGCACGACGCCGCCGAGTGCACGCTCGCCGAGCTGCGCTGCCGGCTCGTGGCCTGCCGCCCCTTCCGCCTGCTGCAGCGCGGAGCCCTGGCCGCCGCGCGCGCCACGCACGAGCGCCTCAGCCGCCGCCGCCGCGACCGCTTCCGGGCCTGGCTGGACGCCAACCGACCGCACCTAGACGAGCGCCTCTCTATCTAA

Protein

MMKRTGVPRLGPDEPSPLQAQNAAQLQQAGASSLHSLAQPHSQPILNSNALVSVGGFGRGSRGAAPVLGYMKPGALQYAPPKQPPPQMTPRIKAVQPPVPPAQPPAAPPQAGGGVAAPPAGAQSPGPQTQFQRLKVEDALSYLDQVKYKFNTQPQVYNDFLDIMKEFKSQTIDTPGVITRVSNLFKGHPELIVGFNTFLPPGYKIEVQSNGQVSVSMPSPTAIGSGVLLGVHHTQQPQLVHLLPVPHAEECRPVGPALQHLSHAAPDPALHHATGPPVTPTPTAPPGQPVEFNHAIEYVNKIKSRFSRQPDKYKRFLEILHAYQRGHRDLKEPQAKQQTEQEVYSQVAKLFEHQEDLLAEFGQFLPDAKAVTKPEPAHEHHPFSPGQPPREVEPERFAPAVQPEPAPMHLQHALVPKHVTTPPAVVQHPQHHHLKRSPSISSTGQPSSAPPPAKKPRASCLSGATVRDVSYSEAAKLATIHDYSFFERARKALRSQQVYDNFLRCLLLFTNEIISSSELLSVTSPFLCRHPELQRWLHDFVGPPSPPHTPTHTPNTGYPWTNPIPVEPRPRYESVGALGAQMRNDRPQGDMAMDIDLSTCKRLGTSYCALPREAAARKCSGRTPLCKEVLNDTWVSFPTWSEDSTFVTSRKTQYEEYIYRCEDERFELDVVIETNAATIRVLEGVQKKLSRMSGEDAARYRLDDCLGGHSPTVHQRALRRIYGDKVAVDIIAGLKKNPVVAVPVVLRRLKAKEEEWREAQKGFNKQWREQNEKYYLKSLDHQGINFKQNDLKAMRSKTLFNEVESAYAARRPGPHLVVDYNMQSRQEAIKIVRDTAELLIHHARRQTAIQKAEKRRIKQLLRHFLPDLFSHPRQPLSDDEKDEEDKEDAPSPECPIDQQGQENDKNNLKQEIKQESSESDNASDKSGKNGKNNKENKPKNNNNLESNKESVLTQPTNGKRLSNDDQILKSDLKTEPFEVEDDLRDHPPNEGRFVCTSSWYLFLRVHGALCQRLAAARRAMCAAPPARPRHDRPPALALRLAPAHHLPADVSSPTEYYNLLLDLVKGVLDGNMESSAFEDAAREMLGIKAYPAYTLDKLVSIAVRQLQHCASEPWSVRAAELCARDMRAAAGPYVRRALAALRPHHAAFLVRAYGGDECKVTFELLESAGEGRTSPHNNDNRMSPTAQRTSGGVGGVKSVGEGEAVSRCAAWSLYAERFASNKTSGVTARGKPVFLARNARARGLHAPANTSRWPQPPRRPAPRRKPAAHDAAECTLAELRCRLVACRPFRLLQRGALAAARATHERLSRRRRDRFRAWLDANRPHLDERLSI

Uniprot

H9ISH7 A0A2H1VER9 A0A212EJU9 S4PFL9

Pubmed

19121390 22118469 23622113

EMBL

BABH01042282 BABH01042283 BABH01042284 BABH01042285 ODYU01002169 SOQ39319.1 + More
AGBW02014381 OWR41767.1 GAIX01003962 JAA88598.1

Proteomes

UP000005204 UP000007151

PRIDE

H9ISH7

Pfam

PF16879   Sin3a_C        + More
PF08295   Sin3_corepress
PF02671   PAH

Interpro

IPR036600   PAH_sf        + More
IPR037969   SIN3A
IPR031693   Sin3_C
IPR039774   Sin3-like
IPR003822   PAH
IPR013194   HDAC_interact_dom

SUPFAM

SSF47762 SSF47762

ProteinModelPortal

H9ISH7 A0A2H1VER9 A0A212EJU9 S4PFL9

PDB

2N2H E-value=9.96772e-38, Score=398

KEGG

101745746 K11644 paired amphipathic helix protein Sin3a | (RefSeq) paired amphipathic helix protein Sin3a

GO

GO:0003714 GO:0005634 GO:0006355 GO:0016616 GO:0050662 GO:0004420 GO:0008299 GO:0016021 GO:0050661 GO:0006559 GO:0004887

PANTHER

PTHR12346 PTHR12346:SF2

Subcellular location

Nucleus

Length:

1332

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00523999999999998

Exp number, first 60 AAs:

0.00126

Total prob of N-in:

0.00023

outside

1 - 1332

Pi

262.447994

Theta

177.79464

Tajima's D

1.437882

CLR

0.118007

CSRT

0.773311334433278

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics