Silkworm Genome Informatics Database

Gene

KWMTBOMO00673

Pre Gene Modal

BGIBMGA003287

Annotation

PREDICTED:_neogenin_[Bombyx_mori]

Location

Bomo_Chr2(-):133623-138575 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.808

CDS

ATGGCATGTACGTATCAAAAGTCTTCTGCGTCGGCCGGCATCAAGCCCCCGGACCTGTGGATCCACCACGACCAGATGGAACTTAAGCACATGGATAAGGGCATACACGCGTCCGCCAGTAAGATCTCGTCCGACAGCGTGGAGGGCTCGCTGTCCCTGCCCCGCTCGGCGCCGCGCCCCCCCGCCCCTCCCCCCGTGGAGTACGAGCCGGCGAGGGGGCTCCCCCCTCCCTCCTCGTTGGACCGCAGACACTACGTGCCCACCTATGTCGAGAGTGGGGCTGCGTCGTGCACGAGCGGCAGTGAGGCGGCCTCCGTGAGCAGCTGCCGGAGGTGCGACCTCTGCGAGCTGTGCCAGCCCATGACCGGGGTGGGGGCCGGGTGCACGGCGACGTGCGACCGGCGACAGCACCGCCCCCTGCCGGACCAGAGCACCCCGCTGGTGTCGGGCGTGGGGCCGCTGCTCTCCGCGCAGTCCTCGCTGGCGTCCCTGCAGCCGCCGCCGGCTCCATGTGGTTCAGGCACGTGTCCGCTGGGCTCGGCGTGCACCGTGGTGGGGGGGGTCGGCGGGGGGCCGGCCCCGGGAGGAGGGGACATCTACGCGTCCGCCGCCCGGGAGCGCGGACACTACGTAGCCTACGAGCCGCTGGGACACTACACGCATAGGGACTCCATTAGCAGTGAGGCGCCTGGAGGGGGGTCGCTGCGGCGAGGAGCCGGAGGCAGCGTGGCGGGGCCCGTGGGGGGGCCGGGGGGCGTGGTGGGCAGCATTGGGGGGCCGGGGGGTCTGCACAGCTTCGCGCTCGACGCCACCTCGGAGCACTCTACACCTGCACACTCGCACTCCAGAGGCAGCGTGAGAGAGACGTCTCCGTACAAGAAGAGCGCGGGCTCCTCCCCCGGACACATCCCCAACCGCCTGCAGCTGGGAGGAAACGTGAGCCACTGTCCCGAGGAACTGGAGCCCCTGACCCCCTCGCGCTCCACCGAGAGGCTGAACCGGGAGATGCAGAACCTCGAGGGTCTGATGAAGGATCTGTCTGCCATCACCCAGCACCAGTTCCACTGCTAG

Protein

MACTYQKSSASAGIKPPDLWIHHDQMELKHMDKGIHASASKISSDSVEGSLSLPRSAPRPPAPPPVEYEPARGLPPPSSLDRRHYVPTYVESGAASCTSGSEAASVSSCRRCDLCELCQPMTGVGAGCTATCDRRQHRPLPDQSTPLVSGVGPLLSAQSSLASLQPPPAPCGSGTCPLGSACTVVGGVGGGPAPGGGDIYASAARERGHYVAYEPLGHYTHRDSISSEAPGGGSLRRGAGGSVAGPVGGPGGVVGSIGGPGGLHSFALDATSEHSTPAHSHSRGSVRETSPYKKSAGSSPGHIPNRLQLGGNVSHCPEELEPLTPSRSTERLNREMQNLEGLMKDLSAITQHQFHC

Uniprot

H9J1A0 A0A2H1WU35 A0A2A4IW50 A0A194PTN9 A0A2W1BZG0 A0A212F1J6 + More

Pubmed

19121390 26354079 28756777 22118469

EMBL

BABH01031504 BABH01031505 ODYU01011012 SOQ56486.1 NWSH01006463 PCG63412.1 + More
KQ459593 KPI96682.1 KZ149912 PZC78096.1 AGBW02010859 OWR47615.1

Proteomes

UP000005204 UP000218220 UP000053268 UP000007151

PRIDE

H9J1A0

Pfam

PF06583   Neogenin_C        + More
PF07679   I-set
PF00041   fn3

Interpro

IPR010560   Neogenin_C        + More
IPR013783   Ig-like_fold
IPR003961   FN3_dom
IPR036116   FN3_sf
IPR036179   Ig-like_dom_sf
IPR003598   Ig_sub2
IPR013098   Ig_I-set
IPR003599   Ig_sub
IPR007110   Ig-like_dom

SUPFAM

SSF49265 SSF49265 + More
SSF48726 SSF48726

Gene 3D

2.60.40.10

CDD

cd00063 FN3

ProteinModelPortal

H9J1A0 A0A2H1WU35 A0A2A4IW50 A0A194PTN9 A0A2W1BZG0 A0A212F1J6 + More

PDB

3O71 E-value=0.0525439, Score=85

KEGG

101747166 no KO assigned | (RefSeq) neogenin

GO

GO:0016021 GO:0008270 GO:0007608 GO:0016020 GO:0005667 GO:0005737 GO:0004505 GO:0006559 GO:0004887

Length:

356

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.03748

Exp number, first 60 AAs:

0

Total prob of N-in:

0.05885

outside

1 - 356

Pi

287.999742

Theta

211.468392

Tajima's D

1.152853

CLR

0.047657

CSRT

0.702714864256787

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics