Gene

KWMTBOMO00667

Pre Gene Modal

BGIBMGA014468

Annotation

non-LTR_retrotransposon_CATS_[Danaus_plexippus]

Location

Bomo_Chr2(+):4096-5114      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 2.679

CDS

ATGACGGACAGTACTCTGGTCACTCGCGTATTCACTGACGGAAGTAAGCAGGACGATGGATCAGTTGGAGCCGCATTCGTGCTTTACAGACCCGGCGACACTGAAACATCCGTAACAAAAAAGTACAAATTACACAGTAGCTGCACAGTCTTCCAGGCAGAGCTGTACGCCATCTGGAAAGCCTGTCAGTGGATTGTAAGCGAAAATCATCCCCACACATACATCTTCACCGATTCTCTCTCATCAATATACGCGATAAATAACAGAAGCAACACACACCCCATCATAGTGAACATACACAAACTCATACACGCTAACCACACTACACACAAAATTTTCATAGACTGGGTAAAGGGACACTCGGGTGTCATAGGAAACGAGGAAGCCGATGCGGCTGCCAACAGCGGCGCACGCATGCACAAGGCCCCCGACTACTCGCAGTTCTCAATATCCTACGTGAAACACAAGATTCACACAGAACACCACGCCATCTGGCAAGCCAGATACGAAAGCTCCCCGCAGGGCTCACACACAAAAACACTACTACCAAAACTGAACGACATCAAAGAACTCAACAAATGCACACAAACAAACTTTCAGCTTACACAAATACTCACAGGCCATGGATATCACAAGACATACTTACATCGCTTCAAAATAGCACCAGATGACACCTGCCCCTGCGACGGCACTTCCAGCCAAACTGTAGAACACCTCCTTAAAAACTGCCAAGTGTTCGCTGCGAAAAGGCACAGCCACGAAGAAACGTGCCACGAAGTACAGGTGTCACCATATAATTTACCTGAAATGTTAAAAAAGAAAGCTGCAATCAACTCTTTCACTTCGTTTTGCCAAACAATAATCAACAACATCAAGAAAATAAATGAAAACAATTAG

Protein

MTDSTLVTRVFTDGSKQDDGSVGAAFVLYRPGDTETSVTKKYKLHSSCTVFQAELYAIWKACQWIVSENHPHTYIFTDSLSSIYAINNRSNTHPIIVNIHKLIHANHTTHKIFIDWVKGHSGVIGNEEADAAANSGARMHKAPDYSQFSISYVKHKIHTEHHAIWQARYESSPQGSHTKTLLPKLNDIKELNKCTQTNFQLTQILTGHGYHKTYLHRFKIAPDDTCPCDGTSSQTVEHLLKNCQVFAAKRHSHEETCHEVQVSPYNLPEMLKKKAAINSFTSFCQTIINNIKKINENN

Uniprot

A0A0L7KXZ2   A0A0L7L848   A0A2W1BN41   A0A0L7L1P2   Q9BLI5   Q3V5Y4   + More
A0A2A4JF48   Q93139   A0A0K8SHX4   A0A0L7LNK8   A0A1W7R9Y4   A0A224XIA5   A0A0K1IK14   A0A2L2YM05   A0A0K8SHC4   A0A087UJU4   A0A224XI23   A0A1W4XBW8   A0A146MAU1   A0A224X5M4   A0A087TAD8   A0A2P8XKK4   A0A087USZ4   A0A0K1IK29   A0A087UHT1   A0A224XJE3   A0A147BK23   A0A2P2I011   A0A087TCH8   O44315   A0A2P8YWT2   O44317   A0A087UD41   A0A131XRY9   A0A1B6KR96   A0A224XH57   A0A0K8TSF0   A0A2P2I5V9   A0A087TJZ1   A0A1B6M434   A0A023EY06   A0A1B6KIY7   C5K9U8   A0A142LX31   A0A2E0U2U9   A0A0A9XF39   A0A023EXV9   A0A2P8Z0H0   A0A2P2I6P4   A0A087T9L0   A0A087UUI6   A0A2I4BSC2   A0A1Y1LDH5   A0A1B6G0A1   A0A2P2I3J0   A0A023F0B9   A0A0J7JVQ0   X8J4L8   G4TXQ0   A0A023EZZ1   A0A177TQJ6   A0A023F034   A0A2R6NIA9   A0A2P2I2N0   J9KHB2   A0A1I8IBT3   A0A1Q3G4W4   A0A0G2LA86   L7MBK1   A0A0P6IVR8   B8MA72   A0A182H8P5   A0A1E3B4N3   A0A0G2KM65   A0A2R6NMH3   B8M7C1   F2Q0K8   B8MII7   A0A1E3BB51   A0A2P2HZJ0  

Pubmed

26227816    28756777    11319268    7623845    15247245    26561354    + More
26823975    29403074    29652888    26369729    25474469    25527032    29337314    25401762    28004739    25359908    22022265    26392545    23594743    25576852    26999592    25676766    26483478    27267057    22951933   

EMBL

JTDY01004660    KOB67904.1    JTDY01002407    KOB71471.1    KZ149985    PZC75691.1    + More
JTDY01003675    KOB69169.1    AB046668    BAB21511.1    AB211537    BAE44464.1    NWSH01001820    PCG70022.1    D38414    BAA07467.1    GBRD01013107    JAG52719.1    JTDY01000474    KOB77015.1    GFAH01000444    JAV47945.1    GFTR01004219    JAW12207.1    KP771712    AKU04650.1    IAAA01038678    LAA08500.1    GBRD01013108    JAG52718.1    KK120149    KFM77633.1    GFTR01004280    JAW12146.1    GDHC01002702    JAQ15927.1    GFTR01008639    JAW07787.1    KK114278    KFM62077.1    PYGN01001848    PSN32539.1    KK121445    KFM80483.1    KP771711    AKU04648.1    KK119855    KFM76920.1    GFTR01003820    JAW12606.1    GEGO01004274    JAR91130.1    IACF01001650    LAB67339.1    KK114580    KFM62817.1    AF015489    AAB94030.1    PYGN01000313    PSN48706.1    AF015813    AAB94039.1    KK119281    KFM75280.1    GEFM01006389    JAP69407.1    GEBQ01026019    JAT13958.1    GFTR01004599    JAW11827.1    GDAI01000743    JAI16860.1    IACF01003659    LAB69270.1    KK115566    KFM65430.1    GEBQ01009291    GEBQ01001010    JAT30686.1    JAT38967.1    GBBI01004507    JAC14205.1    GEBQ01028566    JAT11411.1    GG671513    EER18870.1    KU543676    AMS38357.1    PABS01000003    MAT33547.1    GBHO01026176    JAG17428.1    GBBI01004582    JAC14130.1    PYGN01000254    PSN49993.1    IACF01004097    LAB69692.1    KK114163    KFM61799.1    KK121687    KFM81025.1    GEZM01058723    JAV71702.1    GECZ01013919    JAS55850.1    IACF01002963    LAB68595.1    GBBI01004433    JAC14279.1    LBMM01027406    KMQ82197.1    JATN01000322    EUC56479.1    CAFZ01000607    CCA76093.1    GBBI01004351    JAC14361.1    LWDF01000042    OAJ05254.1    GBBI01004583    JAC14129.1    MLYV02001214    PSR72099.1    IACF01002639    LAB68284.1    ABLF02006498    GFDL01000236    JAV34809.1    CR848788    GACK01003634    JAA61400.1    GDUN01000835    JAN95084.1    EQ962655    EED18401.1    JXUM01118898    KQ566235    KXJ70294.1    JXNT01000014    ODM15935.1    BX908731    MLYV02001069    PSR73545.1    EQ962654    EED20341.1    DS995764    EGE07676.1    EQ962657    EED15079.1    JXNT01000006    ODM18159.1    IACF01001499    LAB67197.1   

Proteomes

UP000037510    UP000218220    UP000054359    UP000192223    UP000245037    UP000192220    + More
UP000036403    UP000030108    UP000007148    UP000077521    UP000186601    UP000007819    UP000095280    UP000000437    UP000001745    UP000069940    UP000249989    UP000094569    UP000009169   

PRIDE

Q9BLI5    Q3V5Y4    Q93139   

Pfam

PF00075   RNase_H        + More
PF14529   Exo_endo_phos_2
PF00078   RVT_1

Interpro

IPR036397   RNaseH_sf        + More
IPR002156   RNaseH_domain       
IPR012337   RNaseH-like_sf       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR001584   Integrase_cat-core       

SUPFAM

SSF53098   SSF53098        + More
SSF56219   SSF56219       

Gene 3D

3.30.420.10     3.60.10.10    

ProteinModelPortal

A0A0L7KXZ2   A0A0L7L848   A0A2W1BN41   A0A0L7L1P2   Q9BLI5   Q3V5Y4   + More
A0A2A4JF48   Q93139   A0A0K8SHX4   A0A0L7LNK8   A0A1W7R9Y4   A0A224XIA5   A0A0K1IK14   A0A2L2YM05   A0A0K8SHC4   A0A087UJU4   A0A224XI23   A0A1W4XBW8   A0A146MAU1   A0A224X5M4   A0A087TAD8   A0A2P8XKK4   A0A087USZ4   A0A0K1IK29   A0A087UHT1   A0A224XJE3   A0A147BK23   A0A2P2I011   A0A087TCH8   O44315   A0A2P8YWT2   O44317   A0A087UD41   A0A131XRY9   A0A1B6KR96   A0A224XH57   A0A0K8TSF0   A0A2P2I5V9   A0A087TJZ1   A0A1B6M434   A0A023EY06   A0A1B6KIY7   C5K9U8   A0A142LX31   A0A2E0U2U9   A0A0A9XF39   A0A023EXV9   A0A2P8Z0H0   A0A2P2I6P4   A0A087T9L0   A0A087UUI6   A0A2I4BSC2   A0A1Y1LDH5   A0A1B6G0A1   A0A2P2I3J0   A0A023F0B9   A0A0J7JVQ0   X8J4L8   G4TXQ0   A0A023EZZ1   A0A177TQJ6   A0A023F034   A0A2R6NIA9   A0A2P2I2N0   J9KHB2   A0A1I8IBT3   A0A1Q3G4W4   A0A0G2LA86   L7MBK1   A0A0P6IVR8   B8MA72   A0A182H8P5   A0A1E3B4N3   A0A0G2KM65   A0A2R6NMH3   B8M7C1   F2Q0K8   B8MII7   A0A1E3BB51   A0A2P2HZJ0  

PDB

2QKK     E-value=5.35581e-05,     Score=110

KEGG

NA   

GO

GO:0003676   GO:0004523   GO:0003964   GO:0015074   GO:0007608   GO:0016020   GO:0005667   GO:0005737   GO:0004505   GO:0006559   GO:0004887   GO:0016021  

Length:

298

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00842999999999999

Exp number, first 60 AAs:

0.00367

Total prob of N-in:

0.06791

outside

1  -  298

 

 

Pi

0

Theta

0

Tajima's D

0

CLR

0

CSRT

0

Interpretation

Uncertain