Gene
KWMTBOMO00637 Validated by peptides from experiments
Pre Gene Modal
BGIBMGA003892
Annotation
PREDICTED:_coatomer_protein_complex_subunit_beta_2_isoform_X1_[Bombyx_mori]
Full name
Coatomer subunit beta'
Location in the cell
Nuclear Reliability : 2.916
Sequence
CDS
ATGGAGGCCGTCGAGCCGAATTCAAAGATCACGAATACGGAACGAGACATCGCCGCGGAATACGCCGAAGCGAAACGACGAGGGCCCCTCAACATACCGCCGCTACTCAATCACAATCAAATACAAGATTCTGAAGGGGACAGCAGAGAGGATGCGACAAATGGGAACACGACGAGCGAAAGTCAACAGAAACGTAAAATTTCAATCGACATCATGGAGGAGATAGAACGGGAATTCGGTGAAATCGAATTCGAAAACCACGTCGATAACGATGACCTCTCGGACGTAGAAGACTTAATCGGCTAA
Protein
MEAVEPNSKITNTERDIAAEYAEAKRRGPLNIPPLLNHNQIQDSEGDSREDATNGNTTSESQQKRKISIDIMEEIEREFGEIEFENHVDNDDLSDVEDLIG
Summary
Description
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.
Subunit
Oligomeric complex that consists of at least the alpha, beta, beta', gamma, delta, epsilon and zeta subunits.
Similarity
Belongs to the WD repeat COPB2 family.
Proteomes
Interpro
Gene 3D
Ontologies
KEGG
Topology
Subcellular location
Golgi apparatus membrane
The coatomer is cytoplasmic or polymerized on the cytoplasmic side of the Golgi, as well as on the vesicles/buds originating from it. With evidence from 2 publications.
Cytoplasmic vesicle The coatomer is cytoplasmic or polymerized on the cytoplasmic side of the Golgi, as well as on the vesicles/buds originating from it. With evidence from 2 publications.
COPI-coated vesicle membrane The coatomer is cytoplasmic or polymerized on the cytoplasmic side of the Golgi, as well as on the vesicles/buds originating from it. With evidence from 2 publications.
Cytoplasmic vesicle The coatomer is cytoplasmic or polymerized on the cytoplasmic side of the Golgi, as well as on the vesicles/buds originating from it. With evidence from 2 publications.
COPI-coated vesicle membrane The coatomer is cytoplasmic or polymerized on the cytoplasmic side of the Golgi, as well as on the vesicles/buds originating from it. With evidence from 2 publications.
Length:
101
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0
Exp number, first 60 AAs:
0
Total prob of N-in:
0.21858
outside
1 - 101
Population Genetic Test Statistics
Pi
13.835587
Theta
21.358032
Tajima's D
-1.10439
CLR
0.000935
CSRT
0.117194140292985
Interpretation
Uncertain
