Gene

KWMTBOMO00635

Annotation

Retrovirus-related_Pol_polyprotein_from_transposon_TNT_1-94_[Papilio_machaon]

Location

Bomo_Chr1(-):19686050-19689070      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.798

CDS

ATGTCGTCAAATAATACGATGGCACTGATTGAAAAGCTGACTGGAAGGGAAAACTATCCTACGTGGAGATTTGCAGTGCAAACATATCTCGAACACGAAGAATTATGGAGTTGTGTCACCGCGAAAGACAATGAAACAATTGATCCCAAACTTGATACAAAAGCTAAGTCAAAAATTATCTTATTAGTACATCCAATCAATTATGTACATATACAAGAAGCCAAAACAGCCAAGGAAGTTTGGAATAATTTAGCCAAAGCTTTCGATGACACGGGTTTGACACGCCGAGTGGGTCTGTTGAGAGATCTTATCAATACCACGCTTGAAAATTGTCTGAACATAGAAGATTATGTTAACAAGATTATGACCGCTGCCCATAAGTTAAGGAACATTGGTTTTAAAGTCGATGATGAATGGCTCGGGACTTTATTACTTGCTGGATTACCAGATATATATCAACCAATGATCATGGCACTAGAAAGTTCAGGTCTGACAATAACGGCTGATTCAGTGAAGACTAAGCTTCTACAAGATGTGAGAAACTCAGAGTCCAGTGCATTGTATGTCAGAAGCAAGGGGAATCAATTTGTCAAACAAACTCAAGATAAAACTAAAACTGGTAAAGGTCCAAGGTGCTATGTGTGTAATAAATATGGGCACATAAGTAAAAATTGCCGAAATAAGAAAAAGGAACAGAAGTCTAATGAGAACACAGATTCTGGTTATGTCGCTGTGTTATCTGCAACAATGAACAACGACAATAATTGGTACATTGATTCTGGAGCGTCAATGCATATGACAATGAATCGTGACTGGCTATATGATGAAATTACACCTCCAATTTCCACAATAAAAGTAGCTAATGACAAAAAGTTAGTTGTAAAAGCTTGTGGAAAGGTAAATCTTAATGTTGTCAATATGCAAGGCCAGTTAGAAACTATCAAGGTGCAGAATGTTCTCTATGTTCCTGAGTTGGCTACTAATCTTCTCTCTGTAAGTCAAATAATAAATAGTGGCTGTCAAGTACAATTTGACAAACAAGGATGTAAAATCTTAAATAAAACAAACAAGCAAGTTGCAGCTGCTAAAATGATAAATAATATGTACAGGCTAGTTACACACAGTGTTCCAGCATACACATCAGCTTCAACAGAGAATGATTCTTATTTATGGCATCAGAGAATGGCACATTTAAATTTTGAAGATTTAAATAAACTATCAGAAAGTGCAGGAGTCACATTAGAAAATACAGACAAAGTGATATGTATCTCATGTTTGGAAGGGAAGCAGACAAGATTTCCATTCCCTTCAGAAGGTTCCAGAGCACAAGCAAAGCTAGAACTTATTCACTCTGATGTCTGTGGTCCAATGGAGACACTGTCTATGGGAGGAGCACGCTACTTTCTTACATTCATCGATGATTTTACGAGGAAAGTATTTGTATATGTTTTAAAAAGAAGATCTGAAGTATTCCAAAAATTTCAAGAATTTAAAGTATTAGTTGAAAATCAACTTGATTTGACAATAAAAACTCTCCGCACAGATAATGGGGCTGAGTACTTGAGCAATGAATTTCAAGGTTTTCTTAAGAAATCTGGAATTATACATCAAACCTCCACTCCGTACTCGCCACAACAAAATGGTTTAGCGGAAAGAATGAACCGCACATTATTAGAAAGAGCCAGATGTATGCTTTTAAATGCAAAACTTCAGAAGCATTATTGGGCAGAAGCTGTGTCAACTGCAGCTTACATCACCAATAGATGTCCAACAAGAGCTTTAGCCTTTTTAACACCGGAAGAAATGTGGAGTGGTAAAAAGCCAGATATCACACATATGAAAATTTTTGGCTGTGAAGTGATGGTACATGTTCCTAAAGAAAAAGCTAAGAAGTGGGACTCAAAGACAAATAAATTGATATTCATTGGATATGGTGAACAAACCAAAGGATACAGGCTTTTAGATCCCAAAACAAGAAAAATCATTATAAGCAGAGATGTGATTTTTCTAGAAAGCTCAGTAAAAAGAAATTATGCTGTGGTACCTTTATCAGCATCAGTCCCAAATACCTGTGAAGATACTTCTGTGACTGAAAGTGGCACAACTTTACAAAATGTATCTGAAAGCATTGAAGGTATTAAGGATGAATCCAGTGATGATTTTTACTCAGATGAAGGATCTTTGTATGAACCAGAGATAAATATAGATCACCAGGAAGTAATGTCAAATGTAACTACAAGATCTAAAGCAAGACTGTGTCAAATGCAAGGAAATACCTATATGTGTAGAAAAGAAATTGTAGGACAGGAAAATATCCCAGAAACATATGATGAAGCTATATCTATTGAAAATGCTAATGCTGCAAAATGGAAACAATCAATTGAGGAAGAACTACAAGCACATGCAAAGAATAAAACTTGGCAATTAATTATGAAACCTGAAGGAGTGCGAGTGATTGGCTGTAAATGGGTCTTCAGAATAAAAGATGACCCATCGGGTCCGTGTTTTAAGTCAAGGCTATGTGCTAAAGGCTGTAGCCAGAAACAAGGAATTGATTATAAAGAGATATATTCTCCTACAGTGAGGTATGATTCAGTTCGAGTTTTACTTTCAGAAGCAGCACAACATAATTTGAATATAATTCAGTTTGATGTCAAAACTGCATTCTTATATGGTGACGTCAAAGAAGACATATATATGTTACCGCCTGAAGGTTTGGATACTAATGCAAATATGTAA

Protein

MSSNNTMALIEKLTGRENYPTWRFAVQTYLEHEELWSCVTAKDNETIDPKLDTKAKSKIILLVHPINYVHIQEAKTAKEVWNNLAKAFDDTGLTRRVGLLRDLINTTLENCLNIEDYVNKIMTAAHKLRNIGFKVDDEWLGTLLLAGLPDIYQPMIMALESSGLTITADSVKTKLLQDVRNSESSALYVRSKGNQFVKQTQDKTKTGKGPRCYVCNKYGHISKNCRNKKKEQKSNENTDSGYVAVLSATMNNDNNWYIDSGASMHMTMNRDWLYDEITPPISTIKVANDKKLVVKACGKVNLNVVNMQGQLETIKVQNVLYVPELATNLLSVSQIINSGCQVQFDKQGCKILNKTNKQVAAAKMINNMYRLVTHSVPAYTSASTENDSYLWHQRMAHLNFEDLNKLSESAGVTLENTDKVICISCLEGKQTRFPFPSEGSRAQAKLELIHSDVCGPMETLSMGGARYFLTFIDDFTRKVFVYVLKRRSEVFQKFQEFKVLVENQLDLTIKTLRTDNGAEYLSNEFQGFLKKSGIIHQTSTPYSPQQNGLAERMNRTLLERARCMLLNAKLQKHYWAEAVSTAAYITNRCPTRALAFLTPEEMWSGKKPDITHMKIFGCEVMVHVPKEKAKKWDSKTNKLIFIGYGEQTKGYRLLDPKTRKIIISRDVIFLESSVKRNYAVVPLSASVPNTCEDTSVTESGTTLQNVSESIEGIKDESSDDFYSDEGSLYEPEINIDHQEVMSNVTTRSKARLCQMQGNTYMCRKEIVGQENIPETYDEAISIENANAAKWKQSIEEELQAHAKNKTWQLIMKPEGVRVIGCKWVFRIKDDPSGPCFKSRLCAKGCSQKQGIDYKEIYSPTVRYDSVRVLLSEAAQHNLNIIQFDVKTAFLYGDVKEDIYMLPPEGLDTNANM

Uniprot

A0A194RU38   A0A2A4JRI1   A0A2A4J959   A0A194RJV9   A0A0J7NHJ8   A0A1Y1N668   + More
A0A1Y1N932   A0A0A1WXQ3   A0A224XA26   A0A1W7R6K6   A0A1W7R6J6   A0A0N1ICY1   A0A0A9WPH5   A0A0A9WRE3   A0A1Y1LWI3   A0A1B6E9D0   E5SB91   A0A034VP70   A0A0V1APS7   A0A0V1FKH2   A0A0V1K1Y9   A0A0V0TUP0   A0A0V0T3I0   A0A0V1F2E6   A0A085MVP5   A0A1Y1N6L8   A0A085N572   A0A2J7R8S8   A0A2J7Q1Z2   A0A2J7RKJ6   A0A2J7R668   A0A0N1IFR1   A0A182GZK6   A0A0A9XEY5   A0A1Y3E9R1   A0A0V0Z6Q0   A0A0J7KG03   A0A0A9XVJ9   A0A1W7R657   A0A1Y1NAZ7   A0A1W7R6H6   A0A0A9WQD4   V5GAG2   A0A0A1XLZ7   A0A0V0WR33   A0A1Y1LYU4   W4VRQ4   A0A1W7R670   A0A1W7R663   A0A251T2S6   A0A1Y1N664   A0A251TN47   W4VRP9   A0A1Y1N3X2   W4VRP2   A0A0P6IXK4   W8ANX7   A0A251TCA0   A0A355BEE2   A0A2K3MYT4   A0A0J7K7B7   A0A0K8U956   A0A0V0YNF4   B6V6Z8   A0A0A9YFM0   B8YLY5   A0A0V0RWJ3   A0A182GZN1   W8BWJ0   B8YLY6   B8YLY3   A0A151TGQ2   B8YLY4   A0A151SDY6   A0A0A9XNJ4   A0A0A9XIP2   A0A0A9XD75   A0A0A9XFC8   A0A151RJN4   K7JBY9   A0A2M3YZL3   T1PKV2   A0A146LFV8   A0A2M3YZL7   A0A1W7R6H7   A0A2M4CV35   W8AEF0   A0A151R6U8   A0A2N9HSV3   A0A1X7U495   W8ADM5   A0A2N9F1W0   A0A151R2G6   A0A2N9EE40   A0A2N9GHB5   A0A151TKT1   A0A0A1X768   A0A224X581   W8AL23  

Pubmed

26354079    28004739    25830018    25401762    25348373    24929829    + More
26483478    28538728    26999592    24495485    30148503    24500806    28382043    19656907    22057054    20075255    26823975   

EMBL

KQ459875    KPJ19636.1    NWSH01000816    PCG74073.1    NWSH01002292    PCG68657.1    + More
PCG68658.1    KQ460297    KPJ16236.1    LBMM01004924    KMQ91985.1    GEZM01011856    JAV93393.1    GEZM01011857    JAV93390.1    GBXI01011094    JAD03198.1    GFTR01008662    JAW07764.1    GEHC01000867    JAV46778.1    GEHC01000868    JAV46777.1    KQ460882    KPJ11482.1    GBHO01033237    JAG10367.1    GBHO01033235    JAG10369.1    GEZM01045162    JAV77889.1    GEDC01002834    JAS34464.1    GAKP01015352    JAC43600.1    JYDH01000330    KRY26802.1    JYDT01000069    KRY86576.1    JYDS01000009    JYDV01000021    KRZ33483.1    KRZ41218.1    JYDJ01000136    KRX42725.1    JYDJ01000808    KRX33413.1    JYDR01000001    KRY80095.1    KL367628    KFD61291.1    GEZM01011858    GEZM01011854    JAV93389.1    KL367553    KFD64618.1    NEVH01006721    PNF37230.1    NEVH01019375    PNF22597.1    NEVH01002725    PNF41351.1    NEVH01006980    PNF36330.1    KQ460208    KPJ16606.1    JXUM01099713    KQ564513    KXJ72145.1    GBHO01026221    JAG17383.1    LVZM01023578    OUC39908.1    JYDQ01000379    KRY07987.1    LBMM01008124    KMQ89126.1    GBHO01020706    JAG22898.1    GEHC01000991    JAV46654.1    GEZM01011855    JAV93396.1    GEHC01000990    JAV46655.1    GBHO01036544    JAG07060.1    GALX01001351    JAB67115.1    GBXI01002679    JAD11613.1    JYDK01000071    KRX78146.1    GEZM01045163    JAV77888.1    GANO01000510    JAB59361.1    GEHC01000989    JAV46656.1    GEHC01000988    JAV46657.1    CM007901    OTG04806.1    GEZM01011859    JAV93384.1    CM007899    OTG12557.1    GANO01000659    JAB59212.1    GEZM01013472    GEZM01013471    GEZM01013470    JAV92539.1    GANO01000660    JAB59211.1    GDUN01000214    JAN95705.1    GAMC01020352    JAB86203.1    CM007900    OTG08534.1    DNYX01000353    HBK84078.1    ASHM01014005    PNX95963.1    LBMM01012669    KMQ86061.1    GDHF01029191    JAI23123.1    JYDU01000001    KRY01876.1    FJ238509    ACI62137.1    GBHO01011746    GBHO01011744    GBHO01011742    JAG31858.1    JAG31860.1    JAG31862.1    FJ544854    ACL97385.1    JYDL01000068    KRX18751.1    JXUM01099923    KQ564528    KXJ72133.1    GAMC01008929    JAB97626.1    FJ544856    ACL97386.1    FJ544851    ACL97383.1    CM003608    KYP66219.1    FJ544853    ACL97384.1    KQ483417    KYP53032.1    GBHO01024949    JAG18655.1    GBHO01024951    JAG18653.1    GBHO01024947    JAG18657.1    GBHO01024950    JAG18654.1    KQ483702    KYP42748.1    AAZX01000798    GGFM01000953    MBW21704.1    KA648745    AFP63374.1    GDHC01012180    JAQ06449.1    GGFM01000952    MBW21703.1    GEHC01000879    JAV46766.1    GGFL01004951    MBW69129.1    GAMC01019995    JAB86560.1    KQ484038    KYP38095.1    OIVN01003986    SPD14739.1    GAMC01020355    JAB86200.1    OIVN01000486    SPC81000.1    KQ484186    KYP36645.1    OIVN01000260    SPC77257.1    OIVN01001906    SPC98838.1    CM003607    KYP67664.1    GBXI01007143    JAD07149.1    GFTR01008771    JAW07655.1    GAMC01019998    JAB86557.1   

Proteomes

UP000053240    UP000218220    UP000036403    UP000054776    UP000054995    UP000054805    + More
UP000054826    UP000055048    UP000054632    UP000235965    UP000069940    UP000249989    UP000243006    UP000054783    UP000054673    UP000215914    UP000236291    UP000054815    UP000054630    UP000075243    UP000002358    UP000007879   

Pfam

PF07727   RVT_2        + More
PF00665   rve
PF13961   DUF4219
PF13976   gag_pre-integrs
PF00098   zf-CCHC

Interpro

IPR025314   DUF4219        + More
IPR012337   RNaseH-like_sf       
IPR036875   Znf_CCHC_sf       
IPR013103   RVT_2       
IPR001584   Integrase_cat-core       
IPR025724   GAG-pre-integrase_dom       
IPR036397   RNaseH_sf       
IPR001878   Znf_CCHC       
IPR039537   Retrotran_Ty1/copia-like       

SUPFAM

SSF57756   SSF57756        + More
SSF53098   SSF53098       

Gene 3D

3.30.420.10    

ProteinModelPortal

A0A194RU38   A0A2A4JRI1   A0A2A4J959   A0A194RJV9   A0A0J7NHJ8   A0A1Y1N668   + More
A0A1Y1N932   A0A0A1WXQ3   A0A224XA26   A0A1W7R6K6   A0A1W7R6J6   A0A0N1ICY1   A0A0A9WPH5   A0A0A9WRE3   A0A1Y1LWI3   A0A1B6E9D0   E5SB91   A0A034VP70   A0A0V1APS7   A0A0V1FKH2   A0A0V1K1Y9   A0A0V0TUP0   A0A0V0T3I0   A0A0V1F2E6   A0A085MVP5   A0A1Y1N6L8   A0A085N572   A0A2J7R8S8   A0A2J7Q1Z2   A0A2J7RKJ6   A0A2J7R668   A0A0N1IFR1   A0A182GZK6   A0A0A9XEY5   A0A1Y3E9R1   A0A0V0Z6Q0   A0A0J7KG03   A0A0A9XVJ9   A0A1W7R657   A0A1Y1NAZ7   A0A1W7R6H6   A0A0A9WQD4   V5GAG2   A0A0A1XLZ7   A0A0V0WR33   A0A1Y1LYU4   W4VRQ4   A0A1W7R670   A0A1W7R663   A0A251T2S6   A0A1Y1N664   A0A251TN47   W4VRP9   A0A1Y1N3X2   W4VRP2   A0A0P6IXK4   W8ANX7   A0A251TCA0   A0A355BEE2   A0A2K3MYT4   A0A0J7K7B7   A0A0K8U956   A0A0V0YNF4   B6V6Z8   A0A0A9YFM0   B8YLY5   A0A0V0RWJ3   A0A182GZN1   W8BWJ0   B8YLY6   B8YLY3   A0A151TGQ2   B8YLY4   A0A151SDY6   A0A0A9XNJ4   A0A0A9XIP2   A0A0A9XD75   A0A0A9XFC8   A0A151RJN4   K7JBY9   A0A2M3YZL3   T1PKV2   A0A146LFV8   A0A2M3YZL7   A0A1W7R6H7   A0A2M4CV35   W8AEF0   A0A151R6U8   A0A2N9HSV3   A0A1X7U495   W8ADM5   A0A2N9F1W0   A0A151R2G6   A0A2N9EE40   A0A2N9GHB5   A0A151TKT1   A0A0A1X768   A0A224X581   W8AL23  

PDB

5HRR     E-value=3.37809e-05,     Score=116

KEGG

105841774    no KO assigned | (RefSeq) retrovirus-related Pol polyprotein from transposon TNT 1-94

GO

GO:0008270   GO:0003676   GO:0000943   GO:0015074   GO:0003964   GO:0005634   GO:0043565   GO:0003677   GO:0003707   GO:0004887   GO:0016021  

PANTHER

PTHR11439  

Length:

912

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01976

Exp number, first 60 AAs:

2e-05

Total prob of N-in:

0.00103

outside

1  -  912

 

 

Pi

0

Theta

0

Tajima's D

0

CLR

0

CSRT

0

Interpretation

Uncertain