SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO00623
Pre Gene Modal
BGIBMGA003856
Annotation
hypothetical_protein_KGM_08773_[Danaus_plexippus]
Location in the cell
PlasmaMembrane   Reliability : 4.983
 

Sequence

CDS
ATGGTCGAAGAAAGAATAAAAATGCGGAAGCAGTTAGGGTTGCTAGAAGGGGTCGCTATTATACTGGGAATAATCTTCGGAAGTGGGATTTTCATATCTCCAAAAGAAGTCTTAGAAAAAACTGGTTCTGTATGGAGTGCTTTGATTGTGTGGGCAGCTTGCGGTGTACTCGCCACTCTTGGTGCTATGTCGTATGCTGAACTTGGAACTACTCTCGCTCAAAGTGGAGGAGATTATCATTACATTAATGAAGCATATGGTCCATTACCAGCCTTCTTATATCTATGGGATGCTAATTTTGTCTTTGTACCAAGCACTAATGCAATTATGGCTTTGACATTCACAAACAACGTTGTGGAGCCACTATTTCCTAACTGCCCAGTAAATCACATCAGTCGGAAATTAATTGCAGCATCTACTATATGTATTCTAACATTCATAAATGCTTATGACATTAAGTTCACAACAAGGATACAAAACGTGTTTATGTTTACGAAGATTATGGCTTTGGTTATTATAATTATTGGTGGCATTGTGTGGATATTGAGAGGTGGCACAGAGCATTTTGAAAATGGATGGGAAGGCACAAAGACTTCAGCTGCTGAGTGGTCTGTGGCATTCTATTCGGGAATATTCTCTTATTCAGGATGGAGTTACTTGAACTTTATGACAGAAGAATTGAGAGATCCATACGTCAATCTTCCGCGCGCCATATATATATCGTTGCCACTGGTCACTGTTATATACCTGCTTGCTAATATGTCATATCTCGCTGTACTGGGACCAGTCGGGGTGACATCAACGGAGGCCATTGCTGTGGATTTCGCGGATCACGCCCTGGGTTGGTTTAAGTGGGCCATGCCGACGCTAGTAGCCGTCGCGATCCTCGGCGGGCTCTCTGTGCACATAATGACATCATCGCGCATGTGCTTCGCTGGAGCCAGGAACGGACACATGCCGGAACTTCTCGCCCACATCAACGTAAAGTGCATGTCGCCGATGCCTTCGCTCGTGTTCTTGATGCTGATGTCGTTATTAATGTTGATTCCGAATAATCTGACATCTTTGATAACGTACTGCACGGTCGTCGAGTCTTTCTTCACCACGTTGAGCTGCAGCGCTGTACTTTGGCTGAGATACAAGAGACCAGAATTACATAGACCTATACAGGTTCAACTTTGGATACCGGTGTTGTTTGTGGTGATCAGTACCATGCTGCTCGTGGTGCCTGTGATCAGCGAGCCATTCGCCGTGCTGGCCGGTGCCGGTATGACCCTGGCCGGAGTACCGGTGTACTTGTGCCTGGTCCGAACAACGCCAAGTCCAATCAAGAGATTGTCTGTGAGATTCACGTATTTTTGCCAGAAGATATTCCTGTGCGTCGTCGAAGACAAGGAAGAATGA
Protein
MVEERIKMRKQLGLLEGVAIILGIIFGSGIFISPKEVLEKTGSVWSALIVWAACGVLATLGAMSYAELGTTLAQSGGDYHYINEAYGPLPAFLYLWDANFVFVPSTNAIMALTFTNNVVEPLFPNCPVNHISRKLIAASTICILTFINAYDIKFTTRIQNVFMFTKIMALVIIIIGGIVWILRGGTEHFENGWEGTKTSAAEWSVAFYSGIFSYSGWSYLNFMTEELRDPYVNLPRAIYISLPLVTVIYLLANMSYLAVLGPVGVTSTEAIAVDFADHALGWFKWAMPTLVAVAILGGLSVHIMTSSRMCFAGARNGHMPELLAHINVKCMSPMPSLVFLMLMSLLMLIPNNLTSLITYCTVVESFFTTLSCSAVLWLRYKRPELHRPIQVQLWIPVLFVVISTMLLVVPVISEPFAVLAGAGMTLAGVPVYLCLVRTTPSPIKRLSVRFTYFCQKIFLCVVEDKEE

Summary

EMBL
BABH01031256    BABH01031257    NWSH01000355    PCG77085.1    AGBW02013268    OWR43776.1    + More
ODYU01006044    SOQ47542.1    KQ461196    KPJ06312.1    KQ459605    KPI91991.1    CH477244    EAT46282.1    AY249245    AAP76305.1    JXUM01115895    JXUM01115896    JXUM01115897    JXUM01115898    JXUM01111899    JXUM01111900    JXUM01111901    JXUM01111902    GFDL01014314    JAV20731.1    GGFK01010721    MBW44042.1    GGFJ01004868    MBW54009.1    AXCN02000307    ADMH02001770    ETN61132.1    DS232529    EDS43043.1    AXCM01000079    AAAB01008851    EAA07276.3    APCN01002208    ATLV01018186    KE525221    KFB42759.1    QOIP01000007    RLU20165.1    GBBI01002446    JAC16266.1    KK107238    EZA54699.1    KQ971312    EEZ98248.2    GFTR01006544    JAW09882.1    GL888216    EGI64825.1    GFDL01014276    JAV20769.1    KQ978931    KYN27473.1    KQ434869    KZC09425.1    KQ435830    KOX71791.1    GL771869    EFZ09116.1    GL447108    EFN86936.1    GFXV01007152    MBW18957.1    ADTU01003529    GDAI01000900    JAI16703.1    KQ976462    KYM84641.1    KQ983089    KYQ47692.1    APGK01053334    KB741223    ENN72355.1    KQ414797    KOC60683.1    GBHO01034384    GBHO01014094    GBRD01012171    GDHC01019047    JAG09220.1    JAG29510.1    JAG53653.1    JAP99581.1    KI210134    KI210135    ERL96163.1    ERL96168.1    KZ288208    PBC33009.1    GANO01002133    JAB57738.1    GGMR01009375    MBY21994.1    CH916369    EDV92782.1    GECU01028029    JAS79677.1    NNAY01001179    OXU24843.1    CH933806    EDW14529.1    KRG01052.1    KQ981204    KYN44939.1    GEBQ01017773    JAT22204.1    GDHF01003507    JAI48807.1    GAKP01012450    GAKP01012448    JAC46504.1    ABLF02039764    ABLF02039771    ABLF02039772    ABLF02066330    LBMM01004199    KMQ92707.1    GGMS01005835    MBY75038.1    CM000160    EDW98545.1    CH954182    EDV53461.1    CM000364    EDX14631.1    AE014297    AY060663    BT011041    AAF56667.1    AAL28211.1    AAR31112.1    AHN57554.1    ALI30642.1    CH940650    EDW67419.1    CH480828    EDW45200.1    KK854218    PTY13246.1    CCAG010001934    GFDF01009320    JAV04764.1    CM000070    EAL27419.2    CH479179    EDW24005.1    GEZM01036441    JAV82697.1    JRES01001712    KNC20583.1    CH902623    EDV30414.1    DS235021    EEB10585.1    GDIP01179137    GDIP01106756    LRGB01002993    JAL96958.1    KZS05113.1    GBXI01015860    JAC98431.1    OUUW01000005    SPP80566.1    GDIQ01259220    JAJ92504.1    IACF01002450    LAB68104.1    GL732598    EFX72587.1    GAMC01017439    GAMC01017437    JAB89118.1    CH964232    EDW81388.1    GDIP01195836    JAJ27566.1   
Pfam
PF13520   AA_permease_2
Interpro
IPR002293   AA/rel_permease1       
PDB
6IRT     E-value=8.05995e-78,     Score=740

Ontologies

Topology

Length:
467
Number of predicted TMHs:
10
Exp number of AAs in TMHs:
249.08345
Exp number, first 60 AAs:
37.64253
Total prob of N-in:
0.99590
POSSIBLE N-term signal
sequence
inside
1  -  11
TMhelix
12  -  34
outside
35  -  43
TMhelix
44  -  66
inside
67  -  159
TMhelix
160  -  182
outside
183  -  201
TMhelix
202  -  224
inside
225  -  236
TMhelix
237  -  259
outside
260  -  278
TMhelix
279  -  301
inside
302  -  321
TMhelix
322  -  341
outside
342  -  355
TMhelix
356  -  378
inside
379  -  390
TMhelix
391  -  413
outside
414  -  416
TMhelix
417  -  436
inside
437  -  467
 
 

Population Genetic Test Statistics

Pi
20.965265
Theta
18.764843
Tajima's D
-0.541971
CLR
0
CSRT
0.229188540572971
Interpretation
Uncertain
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