Gene

KWMTBOMO00613

Annotation

endonuclease-reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr1(-):19020149-19020608      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.13 Nuclear   Reliability : 1.361

CDS

ATGCTGCTTGCTATCAAAAAGCGCAAGATAGAGTATCTCGGCCACGTGCTCAGGAACGATCGATACATGCTGCTGCAGCTGATAATTATGGGCAAAGTGGACGGAAAGAGACGTGCTGGGCGAAGGAAAAAGTCATGGCTCCGGAATATCCGGGAGTGGACCGGTATTGCCTCCGTCGAACAGCTGTTCCGGCTGGCTGCTGACAGAAAGGAATACAGAAAGCTAACGGCCAACCTTCAGGATTGA

Protein

MLLAIKKRKIEYLGHVLRNDRYMLLQLIIMGKVDGKRRAGRRKKSWLRNIREWTGIASVEQLFRLAADRKEYRKLTANLQD

Uniprot

D5LB38   A0A2A4J795   A0A0N0PCF3   S4NVE8   A0A194PZW3   A0A194PL64   + More
A0A151IIH7   A0A194RRJ3   A0A146L0Z1   A0A0A9VZT6   A0A2H1V1U0   A0A0J7KRQ5   A0A0K8T3U8   A0A2S2QJK3   A0A0A9XCF5   A0A2S2PW26   A0A0J7KZE8   A0A2S2QAF2   A0A0A9XXL9   A0A0N0PFP4   A0A0N1IQU0   A0A2A4JBK9   W4Y921   X1D4L4   H3B2Y3   A0A2S2P9Y7   A0A2S2PJ33   J9LIJ7   A0A0J7KK86   A0A2A4JXP9   A0A0B7BUS3   A0A2S2NMQ2   A0A2G8L4W3   A0A0B7BT80   A0A2W1BSK1   A0A2S2P7C6   A0A0B7BSZ9   A0A0B7BUR9   W4XFH1   W4ZJA4   H2YWZ5   A0A0B7BVF8   A0A0B7BT11   A0A2G8JIV5   A0A2W1BJT6   A0A2W1BHL0   H2YWZ6   A0A2J7PHB0   A0A2G8JCM7   W4XV24   A0A0B7BTW4   A0A2G8K274   A0A0B7BSC2   A0A2G8JCI6   A0A1W7RAL1   D7F174   A0A1S4ERW3   A0A2G8K327   A0A0B7BVF2   D7F161   A0A2G8JE23   A0A0B7BSB6   A0A0B7BVD9   A0A2G8KAM1   A0A0B7BVD3   W5NMM5   A0A2J7Q3X3   A0A2G8LJK7   A0A2G8KTJ4   A0A2W1BKE5   A0A2W1B3R1   W4Z5I9   A0A067QUE5   D5LB39   X1WK45   H3J6U9   A0A2S2PJ80   J9M5S4   A0A2W1BSS7   A0A2P8ZAK7   A0A2P8YSP7  

Pubmed

20470440    26354079    23622113    26823975    25401762    24624126    + More
9215903    29023486    28756777    24845553    29403074   

EMBL

GU815089    ADF18552.1    NWSH01002736    PCG67606.1    KQ460652    KPJ12975.1    + More
GAIX01012977    JAA79583.1    KQ459585    KPI98284.1    KQ459602    KPI93474.1    KQ977522    KYN02133.1    KQ459765    KPJ20087.1    GDHC01017214    JAQ01415.1    GBHO01041897    JAG01707.1    ODYU01000306    SOQ34818.1    LBMM01003995    KMQ92919.1    GBRD01005612    JAG60209.1    GGMS01008711    MBY77914.1    GBHO01028834    JAG14770.1    GGMS01000367    MBY69570.1    LBMM01001656    KMQ95932.1    GGMS01004979    MBY74182.1    GBHO01020011    GDHC01013600    JAG23593.1    JAQ05029.1    LADJ01023802    KPJ21112.1    LADJ01040095    KPJ21345.1    NWSH01001998    PCG69477.1    AAGJ04161766    BART01031562    GAH15691.1    AFYH01119920    GGMR01013640    MBY26259.1    GGMR01016842    MBY29461.1    ABLF02012409    ABLF02012412    LBMM01006413    KMQ90631.1    NWSH01000469    PCG76200.1    HACG01049256    CEK96121.1    GGMR01005851    MBY18470.1    MRZV01000221    PIK55282.1    HACG01049244    HACG01049247    CEK96109.1    CEK96112.1    KZ149912    PZC78062.1    GGMR01012724    MBY25343.1    HACG01049248    HACG01049253    CEK96113.1    CEK96118.1    HACG01049251    HACG01049252    CEK96116.1    CEK96117.1    AAGJ04075245    AAGJ04021158    HACG01049496    CEK96361.1    HACG01049494    HACG01049495    CEK96359.1    CEK96360.1    MRZV01001840    PIK35676.1    KZ150136    PZC72990.1    KZ150087    PZC73751.1    NEVH01025142    PNF15708.1    MRZV01002526    PIK33493.1    AAGJ04068581    HACG01049492    CEK96357.1    MRZV01000964    PIK42080.1    HACG01049254    CEK96119.1    MRZV01002544    PIK33458.1    GFAH01000222    JAV48167.1    FJ265559    ADI61827.1    MRZV01000940    PIK42365.1    HACG01049490    HACG01049491    CEK96355.1    CEK96356.1    FJ265546    ADI61814.1    MRZV01002322    PIK33998.1    HACG01049249    CEK96114.1    HACG01049255    CEK96120.1    MRZV01000739    PIK45030.1    HACG01049245    CEK96110.1    AHAT01022938    NEVH01018421    PNF23288.1    MRZV01000056    PIK60437.1    MRZV01000378    PIK51329.1    KZ149994    PZC75509.1    KZ150366    PZC71172.1    AAGJ04063504    KK852927    KDR13697.1    GU815090    ADF18553.1    ABLF02024992    ABLF02024994    ABLF02025002    ABLF02043975    AAGJ04118689    AAGJ04161747    GGMR01016881    MBY29500.1    ABLF02015324    KZ149985    PZC75696.1    PYGN01000123    PSN53532.1    PYGN01000382    PSN47273.1   

Proteomes

UP000218220    UP000053240    UP000053268    UP000078542    UP000036403    UP000007110    + More
UP000008672    UP000007819    UP000230750    UP000007875    UP000235965    UP000079169    UP000018468    UP000027135    UP000245037   

PRIDE

D5LB38    D7F174    D7F161    D5LB39   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF03188   Cytochrom_B561
PF10613   Lig_chan-Glu_bd
PF00096   zf-C2H2
PF03221   HTH_Tnp_Tc5
PF04218   CENP-B_N

Interpro

IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR006593   Cyt_b561/ferric_Rdtase_TM       
IPR027124   Swc5/CFDP2       
IPR019594   Glu/Gly-bd       
IPR013087   Znf_C2H2_type       
IPR036236   Znf_C2H2_sf       
IPR006600   HTH_CenpB_DNA-bd_dom       
IPR007889   HTH_Psq       
IPR009057   Homeobox-like_sf       

SUPFAM

SSF56219   SSF56219        + More
SSF57667   SSF57667       
SSF46689   SSF46689       

Gene 3D

3.60.10.10    

ProteinModelPortal

D5LB38   A0A2A4J795   A0A0N0PCF3   S4NVE8   A0A194PZW3   A0A194PL64   + More
A0A151IIH7   A0A194RRJ3   A0A146L0Z1   A0A0A9VZT6   A0A2H1V1U0   A0A0J7KRQ5   A0A0K8T3U8   A0A2S2QJK3   A0A0A9XCF5   A0A2S2PW26   A0A0J7KZE8   A0A2S2QAF2   A0A0A9XXL9   A0A0N0PFP4   A0A0N1IQU0   A0A2A4JBK9   W4Y921   X1D4L4   H3B2Y3   A0A2S2P9Y7   A0A2S2PJ33   J9LIJ7   A0A0J7KK86   A0A2A4JXP9   A0A0B7BUS3   A0A2S2NMQ2   A0A2G8L4W3   A0A0B7BT80   A0A2W1BSK1   A0A2S2P7C6   A0A0B7BSZ9   A0A0B7BUR9   W4XFH1   W4ZJA4   H2YWZ5   A0A0B7BVF8   A0A0B7BT11   A0A2G8JIV5   A0A2W1BJT6   A0A2W1BHL0   H2YWZ6   A0A2J7PHB0   A0A2G8JCM7   W4XV24   A0A0B7BTW4   A0A2G8K274   A0A0B7BSC2   A0A2G8JCI6   A0A1W7RAL1   D7F174   A0A1S4ERW3   A0A2G8K327   A0A0B7BVF2   D7F161   A0A2G8JE23   A0A0B7BSB6   A0A0B7BVD9   A0A2G8KAM1   A0A0B7BVD3   W5NMM5   A0A2J7Q3X3   A0A2G8LJK7   A0A2G8KTJ4   A0A2W1BKE5   A0A2W1B3R1   W4Z5I9   A0A067QUE5   D5LB39   X1WK45   H3J6U9   A0A2S2PJ80   J9M5S4   A0A2W1BSS7   A0A2P8ZAK7   A0A2P8YSP7  

KEGG

101739063    no KO assigned | (RefSeq) uncharacterized LOC101739063

GO

GO:0003964   GO:0004519   GO:0055114   GO:0016021   GO:0004970   GO:0003676   GO:0003677  

PANTHER

PTHR23227  

Length:

81

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01592

Exp number, first 60 AAs:

0.01206

Total prob of N-in:

0.48232

outside

1  -  81

 

 

Pi

22.109187

Theta

21.541055

Tajima's D

0.080436

CLR

0

CSRT

0.39998000099995

Interpretation

Uncertain