Gene

KWMTBOMO00607  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA012223

Annotation

PREDICTED:_paraplegin_[Amyelois_transitella]

Location

Bomo_Chr1(-):18471771-18476379      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 2.205

CDS

ATGTTATCAGTGAAAAGGTTCCCGGCACTTTCAGCGTCAAAATTTCAAAATAAACTACATTTTAATCTGAGTAATTATGTCTTAGGAAAGCAAGTAAACAAACATTGTGAAAGTAAGATGTTGAAATTATGTAGATCGTTCTCTGTTTTACACAATTTGACCGCCAAATCTAAGAATCCGCAACTCAGAACCTTCAATGCAGAATATAAAGCTGCTTGTGCATTACTTAAGAGGTCACAACTTCCAAGCTTGGACTCTTTCATCCACAGCATAAGCACAAGGGGCATCCACACCACACAAACCAACCATAACCAACAAGATGATAAAGATAAGGATAAAAAAGACAAGAAGAATAATGAACTCTCTTCTCTATTAATGAAAGCAGTTTTTTGGATGCTCACAACTTGTATTTTAATTATCATGAGTACTCTGCTTGTACCGAGTGACACTCCACAGAATGAGGTAATACGATATGTGTCCTGGAATGAATTTGTTTACTCGATGCTGGCGAAAGGTGAAGTTCAAGAGTTGATAGTACGACCCGATATGGAAGTTGTCACAATTATACTTTATGAGGGCGCCATCATCAAAGGAAGGCGGGCAAACAACAGAGTCTTTCACATAAACGTTGGCGACATACACAGATTCGAAGAAAAGCTACGGGAAACCGAGAAGAACCTAGGAGTCAAAGAAGGTAAAATATGTCGTGGGGTGAAATGA

Protein

MLSVKRFPALSASKFQNKLHFNLSNYVLGKQVNKHCESKMLKLCRSFSVLHNLTAKSKNPQLRTFNAEYKAACALLKRSQLPSLDSFIHSISTRGIHTTQTNHNQQDDKDKDKKDKKNNELSSLLMKAVFWMLTTCILIIMSTLLVPSDTPQNEVIRYVSWNEFVYSMLAKGEVQELIVRPDMEVVTIILYEGAIIKGRRANNRVFHINVGDIHRFEEKLRETEKNLGVKEGKICRGVK

Uniprot

A0A2W1BRD9   A0A2A4JT79   A0A212FKL2   A0A194QYA7   A0A194PFG1   V5I8W7   + More
A0A2J7PL62   A0A2J7PL59   D6WIB7   A0A1B6KDF9   A0A1Y1L1Z2   A0A067QZP8   A0A1B6IRX5   A0A1B6CC58   A0A1B6F8D8   A0A1S4G065   Q16I01   A0A224XFM3   A0A0A9Z798   A0A0N8AGR9   A0A0P5GZB3   A0A0N8CV44   A0A0P6A453   A0A162PSJ7   A0A0N8B9E5   A0A0P5SQ79   A0A0P6HKJ4   A0A0P4VSS4   N6TDK5   A0A182GCH7   W8CD02   G3MSV1   T1I0I0   A0A224YPR2   A0A023FMC2   W8BWY1   A0A131XIU0   A0A023GP31   A0A023G039   A0A131Z542   A0A034WSE7   U4TZ15   U4TW09   A0A1E1X984   L7M7J7   A0A1I8MM13   A0A1L8D8S4   A0A0K8U9C8   A0A0K8V030   A0A0K8VBW3   A0A182LX52   A0A182W4S2   A0A1Z5L301   B0X3B3   A0A182YK71   A0A293MDT0   A0A182TB73  

Pubmed

28756777    22118469    26354079    18362917    19820115    28004739    + More
24845553    17510324    25401762    27129103    23537049    26483478    24495485    22216098    28797301    28049606    26830274    25348373    28503490    25576852    25315136    28528879    25244985   

EMBL

KZ149925    PZC77608.1    NWSH01000649    PCG75029.1    AGBW02008029    OWR54278.1    + More
KQ460953    KPJ10284.1    KQ459605    KPI92022.1    GALX01003965    JAB64501.1    NEVH01024428    PNF17074.1    PNF17073.1    KQ971321    EFA00737.1    GEBQ01030743    JAT09234.1    GEZM01066981    JAV67604.1    KK852811    KDR15916.1    GECU01018076    JAS89630.1    GEDC01026393    JAS10905.1    GECZ01023271    JAS46498.1    CH478124    EAT33893.1    GFTR01007828    JAW08598.1    GBHO01004371    GBRD01017640    JAG39233.1    JAG48187.1    GDIP01148985    JAJ74417.1    GDIQ01235592    JAK16133.1    GDIP01095895    JAM07820.1    GDIP01034894    JAM68821.1    LRGB01000446    KZS19113.1    GDIQ01199899    JAK51826.1    GDIQ01100990    JAL50736.1    GDIQ01017729    JAN77008.1    GDKW01002565    JAI54030.1    APGK01041927    APGK01041928    KB740998    ENN75828.1    JXUM01054167    KQ561808    KXJ77472.1    GAMC01002801    JAC03755.1    JO844952    AEO36569.1    ACPB03008738    GFPF01005097    MAA16243.1    GBBK01002098    JAC22384.1    GAMC01002803    JAC03753.1    GEFH01002144    JAP66437.1    GBBM01000513    JAC34905.1    GBBL01000937    JAC26383.1    GEDV01002028    JAP86529.1    GAKP01001378    JAC57574.1    KB630347    ERL83551.1    KB631202    ERL84158.1    GFAC01003368    JAT95820.1    GACK01005182    JAA59852.1    GFDF01011215    JAV02869.1    GDHF01029354    JAI22960.1    GDHF01020052    JAI32262.1    GDHF01015992    JAI36322.1    AXCM01005886    GFJQ02005241    JAW01729.1    DS232312    EDS39805.1    GFWV01019149    MAA43877.1   

Proteomes

UP000218220    UP000007151    UP000053240    UP000053268    UP000235965    UP000007266    + More
UP000027135    UP000008820    UP000076858    UP000019118    UP000069940    UP000249989    UP000015103    UP000030742    UP000095301    UP000075883    UP000075920    UP000002320    UP000076408    UP000075901   

PRIDE

L7M7J7   

Pfam

PF17862   AAA_lid_3        + More
PF00004   AAA
PF01434   Peptidase_M41
PF06480   FtsH_ext

Interpro

IPR003959   ATPase_AAA_core        + More
IPR037219   Peptidase_M41-like       
IPR000642   Peptidase_M41       
IPR027417   P-loop_NTPase       
IPR041569   AAA_lid_3       
IPR003593   AAA+_ATPase       
IPR005936   FtsH       
IPR011546   Pept_M41_FtsH_extracell       

SUPFAM

SSF52540   SSF52540        + More
SSF140990   SSF140990       

Gene 3D

1.20.58.760    

ProteinModelPortal

A0A2W1BRD9   A0A2A4JT79   A0A212FKL2   A0A194QYA7   A0A194PFG1   V5I8W7   + More
A0A2J7PL62   A0A2J7PL59   D6WIB7   A0A1B6KDF9   A0A1Y1L1Z2   A0A067QZP8   A0A1B6IRX5   A0A1B6CC58   A0A1B6F8D8   A0A1S4G065   Q16I01   A0A224XFM3   A0A0A9Z798   A0A0N8AGR9   A0A0P5GZB3   A0A0N8CV44   A0A0P6A453   A0A162PSJ7   A0A0N8B9E5   A0A0P5SQ79   A0A0P6HKJ4   A0A0P4VSS4   N6TDK5   A0A182GCH7   W8CD02   G3MSV1   T1I0I0   A0A224YPR2   A0A023FMC2   W8BWY1   A0A131XIU0   A0A023GP31   A0A023G039   A0A131Z542   A0A034WSE7   U4TZ15   U4TW09   A0A1E1X984   L7M7J7   A0A1I8MM13   A0A1L8D8S4   A0A0K8U9C8   A0A0K8V030   A0A0K8VBW3   A0A182LX52   A0A182W4S2   A0A1Z5L301   B0X3B3   A0A182YK71   A0A293MDT0   A0A182TB73  

KEGG

101739618    K09552 spastic paraplegia 7 [EC:3.4.24.-] | (RefSeq) paraplegin

GO

GO:0016021   GO:0004222   GO:0005524   GO:0008270   GO:0005739   GO:0007005   GO:0016020   GO:0007229  

Length:

239

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

20.45955

Exp number, first 60 AAs:

0.00036

Total prob of N-in:

0.47900

outside

1  -  128

TMhelix

129  -  148

inside

149  -  239

 

 

Pi

23.941563

Theta

27.353547

Tajima's D

-1.196812

CLR

0.040685

CSRT

0.102544872756362

Interpretation

Uncertain