Gene

KWMTBOMO00606  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA012223

Annotation

PREDICTED:_paraplegin_[Amyelois_transitella]

Location

Bomo_Chr1(-):18454643-18470949      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 2.104 Mitochondrial   Reliability : 1.577

CDS

ATGAATATAAATCTCGGTGGATTCAGCCAACTGGGCAGAGCTAAGTTCACTCTAGTGGATTCTATGACCGGTCAAGGCAAAGGTGTGAAATTTGAAGACGTCGCCGGTCTTAGGGAAGCCAAAATTGAAGTTATGGAATTCGTGGACTATCTAAAGAGGCCGGAGCATTACAAGAATTTGGGTGCAAAGGTACCAAAAGGTGCGCTTTTGCTTGGCCCGCCTGGCTGCGGGAAAACGTTGCTGGCTAAGGCGGTGGCTACAGAGGCCAACGTTCCGTTCCTGTCTATGAACGGTTCAGAGTTCATCGAGATGATCGGAGGCTTGGGGGCCGCTAGAGTCAGAGATCTGTTCAAAGAGGCAAGTTCTCGTAAGCCCTGCATCATATACATAGACGAGATGGACGCGGTGGGCAGAGCCAGGGCTTCCGGCACGTCCCCCTGGGGTCCAGGCGGAGGCGAATCGGAGCAGACCTTGAACCAGCTGCTTGTGGAAATGGACGGCATGAAGAGTAGGGAAGGAGTCGTTGTGTTGGCTTCGACTAACAGAGCTGATGTGCTCGATAAGGCGCTCCTCAGACCTGGCAGATTCGATCGTCACATATTAATCGACCTGCCCACCCTCCAAGAGCGCGAGGAAATTTTCGAACGACATCTAAAAAGCATTGTACTAGAAGAGCTGCCAACGTATTACATAAAGAGATTGGCTTATCTTACGCCCGGATTTAGTGGTGCAGATATAGCTAATGTGTGTAATGAGGCCGCCTTGCATGCCGCAAGATTCAAACAGAACATTGTGAAGGCAGCTAATTTAGAATACGCCGTTGAAAGAGTTGTTGGTGGTACCGAGAAACGTAGTCACGCCATGTCGCCGGCCGAGAAGAGGATAGTCGCCTACCACGAGTCCGGTCACGCACTCGTCGGCTGGCTGTTGGAACACACGGACGCTCTATTGAAAGTTACAATAGTGCCTAGAACGAACATGGCTCTAGGTTTCGCTCAGTACACGACGTCGGACCAGAAACTCTACACTAAAGAAGAGCTATTCGATCGTATGTGCATGGCGTTGGGCGGCCGTGCATCTGAAGCCATAACCTTCAATTCAATAACAAGCGGTGCGCAGAACGACTTGGAGAAAGTCACGAAAATAGCCTACGCTCAGGTGAGAGTCTATGGGATGTCGCCAACGGTTGGTCTCGTCTCCTTTCCCGATATCAACGAACGTGGCAAGAGTCCGTTCAGCAAGACCCTCAAGAACCTGATAGATCTGGAAGCCAGGAAGATAATAGCGAACGCTTATTACAGGACCGAAGATATATTGAGAACGAATCAAGATAAACTGAAGAAGCTCGCTGAAGAGCTTCTCAAGAAGGAAACATTAAACTTCAACGAAGTTCAAGGTATATTAGGTCCACCGCCCTTCCCCGGGAAGAAGTTCATCGACCCCGTAGAATTCGAGAACAGCCTCAAGAATATGGAGAAGGCGGCATCCTCTGAAGAGGGCACGCCTGTCGGAGCGCCATCAGCGAAACCAGAGTCGCAGCCTGGGTTGTGA

Protein

MNINLGGFSQLGRAKFTLVDSMTGQGKGVKFEDVAGLREAKIEVMEFVDYLKRPEHYKNLGAKVPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLGAARVRDLFKEASSRKPCIIYIDEMDAVGRARASGTSPWGPGGGESEQTLNQLLVEMDGMKSREGVVVLASTNRADVLDKALLRPGRFDRHILIDLPTLQEREEIFERHLKSIVLEELPTYYIKRLAYLTPGFSGADIANVCNEAALHAARFKQNIVKAANLEYAVERVVGGTEKRSHAMSPAEKRIVAYHESGHALVGWLLEHTDALLKVTIVPRTNMALGFAQYTTSDQKLYTKEELFDRMCMALGGRASEAITFNSITSGAQNDLEKVTKIAYAQVRVYGMSPTVGLVSFPDINERGKSPFSKTLKNLIDLEARKIIANAYYRTEDILRTNQDKLKKLAEELLKKETLNFNEVQGILGPPPFPGKKFIDPVEFENSLKNMEKAASSEEGTPVGAPSAKPESQPGL

Uniprot

A0A212FKL2   A0A194QYA7   A0A2A4JT79   A0A194PFG1   A0A2W1BRD9   H9JRR3   + More
D6WIB7   A0A2J7PL62   A0A2J7PL59   A0A067QZP8   A0A1B6CC58   A0A1B6DUN7   A0A1Y1L1Z2   A0A1B6KFJ2   U4TZ15   A0A1B6F8D8   A0A0P5LDV2   A0A0N8AGR9   A0A162PSJ7   A0A0P6AXI0   A0A0P5KZH8   A0A0P6HKJ4   A0A0P5SQ79   A0A182W4S2   A0A182LX52   A0A182YK71   A0A182RV32   U4TW09   N6TDK5   A0A2P8YWV7   A0A182K6E2   A0A0P5GZB3   A0A182QMD3   A0A182J2R9   A0A1Q3FGN8   A0A1Q3FGI5   A0A182P7N0   A0A182NVI8   A0A1J1HUG4   A0A182XLR6   A0A182IA75   A0A1I8MM13   T1PPR9   A0A182VE92   A0A182LGZ0   W5JKN9   Q7QFM1   A0A182GCH7   A0A1S4G065   Q16I01   A0A336K415   A0A0N8D5Q6   B4M814   B4JKJ7   A0A232EFL9   U5EWW0   B3MRY3   O76867   K7J6T4   B4Q0X5   A0A0A1XQE0   Q9W4W8   A0A084VFN9   B3NTV6   A0A0A1X8I0   Q16V22   A0A0M5J6G5   A0A0P6A453   A0A0N8B9E5   W8BWY1   A0A0N8CV44   A0A1I8PDJ0   A0A0P5RIQ1   A0A1B6CTJ8   A0A1A9WXZ6   A0A1W4VQX8   A0A2S2NA86   B4MSH2   A0A0K8U9C8   A0A1L8D8S4   B4L634   A0A226F2K5   A0A034WSE7   A0A1L8D8U2   A0A0K8VBW3   A0A0P4VSS4   A0A069DWN2   B4H4F7   A0A1B0CZ87   Q29I07   T1I0I0   A0A0N7ZDD3   A0A224XFM3   A0A3B0K665   A0A1B0GBC2   A0A1A9YH90   A0A1A9VP34   E2C000   A0A0V0G7H8   A0A2M4BEJ3  

Pubmed

22118469    26354079    28756777    19121390    18362917    19820115    + More
24845553    28004739    23537049    25244985    29403074    25315136    20966253    20920257    23761445    12364791    14747013    17210077    26483478    17510324    17994087    28648823    20075255    17550304    25830018    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    24438588    24495485    25348373    27129103    26334808    15632085    20798317   

EMBL

AGBW02008029    OWR54278.1    KQ460953    KPJ10284.1    NWSH01000649    PCG75029.1    + More
KQ459605    KPI92022.1    KZ149925    PZC77608.1    BABH01017326    BABH01017327    BABH01017328    BABH01017329    KQ971321    EFA00737.1    NEVH01024428    PNF17074.1    PNF17073.1    KK852811    KDR15916.1    GEDC01026393    JAS10905.1    GEDC01007902    JAS29396.1    GEZM01066981    JAV67604.1    GEBQ01030023    JAT09954.1    KB630347    ERL83551.1    GECZ01023271    JAS46498.1    GDIQ01171002    JAK80723.1    GDIP01148985    JAJ74417.1    LRGB01000446    KZS19113.1    GDIP01023308    JAM80407.1    GDIQ01185100    JAK66625.1    GDIQ01017729    JAN77008.1    GDIQ01100990    JAL50736.1    AXCM01005886    KB631202    ERL84158.1    APGK01041927    APGK01041928    KB740998    ENN75828.1    PYGN01000311    PSN48736.1    GDIQ01235592    JAK16133.1    AXCN02002225    GFDL01008334    JAV26711.1    GFDL01008386    JAV26659.1    CVRI01000017    CRK90142.1    APCN01001131    KA650195    AFP64824.1    ADMH02001263    ETN63344.1    AAAB01008846    EAA06300.5    JXUM01054167    KQ561808    KXJ77472.1    CH478124    EAT33893.1    UFQS01000107    UFQT01000107    SSW99714.1    SSX20094.1    GDIP01066199    JAM37516.1    CH940653    EDW62290.2    CH916370    EDW00100.1    NNAY01004963    OXU17169.1    GANO01002792    JAB57079.1    CH902622    EDV34538.1    AL023874    CAA19646.1    AAZX01008957    CM000162    EDX01342.1    GBXI01001544    JAD12748.1    AE014298    AAF45806.1    AAS65257.2    ATLV01012451    KE524793    KFB36783.1    CH954180    EDV45664.1    GBXI01007091    JAD07201.1    CH477606    EAT38370.1    CP012528    ALC49898.1    GDIP01034894    JAM68821.1    GDIQ01199899    JAK51826.1    GAMC01002803    JAC03753.1    GDIP01095895    JAM07820.1    GDIQ01100234    JAL51492.1    GEDC01020597    JAS16701.1    GGMR01001436    MBY14055.1    CH963851    EDW75061.1    GDHF01029354    JAI22960.1    GFDF01011215    JAV02869.1    CH933812    EDW05830.1    LNIX01000001    OXA63570.1    GAKP01001378    JAC57574.1    GFDF01011216    JAV02868.1    GDHF01015992    JAI36322.1    GDKW01002565    JAI54030.1    GBGD01000643    JAC88246.1    CH479209    EDW32708.1    AJVK01002128    CH379064    EAL31599.2    ACPB03008738    GDRN01044354    GDRN01044353    JAI66928.1    GFTR01007828    JAW08598.1    OUUW01000025    SPP89625.1    CCAG010022538    GL451712    EFN78696.1    GECL01002203    JAP03921.1    GGFJ01002324    MBW51465.1   

Proteomes

UP000007151    UP000053240    UP000218220    UP000053268    UP000005204    UP000007266    + More
UP000235965    UP000027135    UP000030742    UP000076858    UP000075920    UP000075883    UP000076408    UP000075900    UP000019118    UP000245037    UP000075881    UP000075886    UP000075880    UP000075885    UP000075884    UP000183832    UP000076407    UP000075840    UP000095301    UP000075903    UP000075882    UP000000673    UP000007062    UP000069940    UP000249989    UP000008820    UP000008792    UP000001070    UP000215335    UP000007801    UP000002358    UP000002282    UP000000803    UP000030765    UP000008711    UP000092553    UP000095300    UP000091820    UP000192221    UP000007798    UP000009192    UP000198287    UP000008744    UP000092462    UP000001819    UP000015103    UP000268350    UP000092444    UP000092443    UP000078200    UP000008237   

PRIDE

H9JRR3    O76867    Q9W4W8   

Pfam

PF00004   AAA        + More
PF17862   AAA_lid_3
PF01434   Peptidase_M41
PF06480   FtsH_ext
PF00098   zf-CCHC

Interpro

IPR005936   FtsH        + More
IPR003593   AAA+_ATPase       
IPR041569   AAA_lid_3       
IPR027417   P-loop_NTPase       
IPR003959   ATPase_AAA_core       
IPR037219   Peptidase_M41-like       
IPR000642   Peptidase_M41       
IPR011546   Pept_M41_FtsH_extracell       
IPR036875   Znf_CCHC_sf       
IPR001878   Znf_CCHC       

SUPFAM

SSF140990   SSF140990        + More
SSF52540   SSF52540       
SSF57756   SSF57756       

Gene 3D

1.20.58.760    

ProteinModelPortal

A0A212FKL2   A0A194QYA7   A0A2A4JT79   A0A194PFG1   A0A2W1BRD9   H9JRR3   + More
D6WIB7   A0A2J7PL62   A0A2J7PL59   A0A067QZP8   A0A1B6CC58   A0A1B6DUN7   A0A1Y1L1Z2   A0A1B6KFJ2   U4TZ15   A0A1B6F8D8   A0A0P5LDV2   A0A0N8AGR9   A0A162PSJ7   A0A0P6AXI0   A0A0P5KZH8   A0A0P6HKJ4   A0A0P5SQ79   A0A182W4S2   A0A182LX52   A0A182YK71   A0A182RV32   U4TW09   N6TDK5   A0A2P8YWV7   A0A182K6E2   A0A0P5GZB3   A0A182QMD3   A0A182J2R9   A0A1Q3FGN8   A0A1Q3FGI5   A0A182P7N0   A0A182NVI8   A0A1J1HUG4   A0A182XLR6   A0A182IA75   A0A1I8MM13   T1PPR9   A0A182VE92   A0A182LGZ0   W5JKN9   Q7QFM1   A0A182GCH7   A0A1S4G065   Q16I01   A0A336K415   A0A0N8D5Q6   B4M814   B4JKJ7   A0A232EFL9   U5EWW0   B3MRY3   O76867   K7J6T4   B4Q0X5   A0A0A1XQE0   Q9W4W8   A0A084VFN9   B3NTV6   A0A0A1X8I0   Q16V22   A0A0M5J6G5   A0A0P6A453   A0A0N8B9E5   W8BWY1   A0A0N8CV44   A0A1I8PDJ0   A0A0P5RIQ1   A0A1B6CTJ8   A0A1A9WXZ6   A0A1W4VQX8   A0A2S2NA86   B4MSH2   A0A0K8U9C8   A0A1L8D8S4   B4L634   A0A226F2K5   A0A034WSE7   A0A1L8D8U2   A0A0K8VBW3   A0A0P4VSS4   A0A069DWN2   B4H4F7   A0A1B0CZ87   Q29I07   T1I0I0   A0A0N7ZDD3   A0A224XFM3   A0A3B0K665   A0A1B0GBC2   A0A1A9YH90   A0A1A9VP34   E2C000   A0A0V0G7H8   A0A2M4BEJ3  

PDB

6NYY     E-value=5.2474e-129,     Score=1182

KEGG

101739618    K09552 spastic paraplegia 7 [EC:3.4.24.-] | (RefSeq) paraplegin

GO

GO:0004222   GO:0016021   GO:0005524   GO:0005739   GO:0007005   GO:0008270   GO:0016020   GO:0016887   GO:0006508   GO:0008237   GO:0003676   GO:0007166   GO:0019752   GO:0030246   GO:0007169  

Length:

516

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00453

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00075

outside

1  -  516

 

 

Pi

27.229046

Theta

19.62718

Tajima's D

-1.537076

CLR

0.007357

CSRT

0.055597220138993

Interpretation

Uncertain