Silkworm Genome Informatics Database

Gene

KWMTBOMO00589

Pre Gene Modal

BGIBMGA012232

Annotation

PREDICTED:_protein_bric-a-brac_1-like_[Bombyx_mori]

Location

Bomo_Chr1(-):17558978-17570362 View in EpiBrowser

Transcription factor

HTH

Location in the cell

Nuclear Reliability : 2.336

CDS

ATGTGGCAAAAATGCTGGAACACCAACCAGAACTTGGTACACAACCTGCGTTTCCGCGAACGCGGTCCTCTCAAGTCCTGGCGGCCAGAAACTATGGCTGAGGCCATTTTCTCTGTGCTGAAGGAGGGCTTGTCTCTCTCCCAAGCGGCTAGGAAGTACGACATCCCGTACCCGACGTTCGTGCTGTATGCCAACCGCGTCCATAACATGCTCGGACCCAGCGCCGATGGTGGAGCAGATCTGCGACCAAAAGGACGCGGTCGCCCACAAAGGATTCTGCTGGGCGTCTGGCCCGATGAACATATCCGTGGAGTTATCCGCGCGGTCGTATTCCGCGACACGCAGGCACCGCACGCTAATCCTCATCATCTCCGCGAACTAGAGCTGCCGACGTACCCTGCCATCACGGATGGATCACCGACACCGGCTGCATATACCGCGGTGGGGGTCGGCAATGGACGCGAAGAGCGCGTGTCTCCAAATGTTGCCGCCGCCGCCGCCGTAGCCGCCGTGGCCCATGGGCTGCGCCGTCAGATGTGCAACATGGTGGTGGCGGCGCAGCGCCCACAGGACCAGCCGCCACTCGGCCTGCCTCCGCTGCCAATGCACTCACCGCGGCTGCCGTCACCGCTCTCCGCGAGCCTGGAATCACCAATGTGCTCCCCGAGCCAGACGCTCGAGGCCGCGAAGCCCGCCGATCCATTCCGCCCGTTCATATCGCCCCGACCTGAAAGTCGCTATGCAGAACGCGACATTATCCCGGAAATGACCGATATGGGACCGCCAAAGACACCGGTGCCGACTCGGAACGGACAGGCCGCCGGTGCTATGGAGCTGGATGGCTCCGATGACCGTTCCGACATGATATGA

Protein

MWQKCWNTNQNLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGADLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDTQAPHANPHHLRELELPTYPAITDGSPTPAAYTAVGVGNGREERVSPNVAAAAAVAAVAHGLRRQMCNMVVAAQRPQDQPPLGLPPLPMHSPRLPSPLSASLESPMCSPSQTLEAAKPADPFRPFISPRPESRYAERDIIPEMTDMGPPKTPVPTRNGQAAGAMELDGSDDRSDMI

Uniprot

H9JRS2 A0A212FKK9 A0A0L7L5D9 A0A194QY91 A0A2H1VK62 A0A2A4K5V3 + More
A0A2W1BXR0 A0A194PLM2

Pubmed

19121390 22118469 26227816 26354079 28756777

EMBL

BABH01017231 AGBW02008029 OWR54285.1 JTDY01002818 KOB70657.1 KQ460953 + More
KPJ10269.1 ODYU01003001 SOQ41210.1 NWSH01000126 PCG79294.1 KZ149925 PZC77600.1 KQ459605 KPI92005.1

Proteomes

UP000005204 UP000007151 UP000037510 UP000053240 UP000218220 UP000053268 + More

PRIDE

H9JRS2

Pfam

PF05225 HTH_psq

Interpro

IPR009057 Homeobox-like_sf + More
IPR007889 HTH_Psq

SUPFAM

SSF46689 SSF46689

ProteinModelPortal

H9JRS2 A0A212FKK9 A0A0L7L5D9 A0A194QY91 A0A2H1VK62 A0A2A4K5V3 + More
A0A2W1BXR0 A0A194PLM2

KEGG

101745447 no KO assigned | (RefSeq) protein bric-a-brac 1-like

GO

GO:0003677 GO:0005634 GO:0008270 GO:0006355 GO:0043565 GO:0007166 GO:0016020 GO:0019752 GO:0030246 GO:0007169 GO:0016021

Subcellular location

Nucleus

Length:

289

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0861199999999999

Exp number, first 60 AAs:

0.00086

Total prob of N-in:

0.25919

outside

1 - 289

Pi

20.219406

Theta

18.897074

Tajima's D

0.16262

CLR

0.131426

CSRT

0.413329333533323

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics