SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO00588
Pre Gene Modal
BGIBMGA012355
Annotation
PREDICTED:_F-box/WD_repeat-containing_protein_7_isoform_X1_[Bombyx_mori]
Location
Bomo_Chr1(+):17520773-17547950      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 3.313
 

Sequence

CDS
ATGGAATCATCATGTTCCCACACTTCCTGTAATATATACGACGGAGCTAATAGAGTCTTCGAAATAAATGAACGTAAGACTGATGGCGCTGCCAGCGTTGTTGACAAAGGCGGTCACTCGCGGAGCACTGGGCGACAACAGATAGATGACATCGAAAGAGAAGACTTCGACGAGGAGAATAGGATCATAAATCAGTGCTCTAGCATGATAGTGGACGGAAAGCTGGCGGCTGCCTCCCACTACTCTGGAAACTTATCGAGTGCCAACTCGAGTTTAGCGTCCAGTTCCGAGACAATATCGACTTTATCAAACATTATCACTAACTACAGTCTTCCAGGATGTAGCAAAGACTGCGAAGATAGTAATACTACTATAAAGAATATGATAAGTAGGAAATGTGACGATCCACAGACTGACGAAAACAATCCCGATTTTATGCAGAAATTGTTGATCAGTGGAGTGCAAGATAATGTGGATTTTCCCAAAGGGAAGATGTATAAAGTAGATCAGGAGGGTTACTGTGAAAACGACGGTGAAGGCTGTGATATAGAGAGGGTGGGAGGTCCAGCGGGAAGGACTAGTTCAAACGCTTCGAGCATTGGCAGTGCCAGTTCGGATAGCACGAAGGATTTTAACGTACCGTCTACCTCAAATGCTGAAAGACTGCTCGGAATCGAGGATAGGAGCCTGGAGGACAGAAGAAATGACCCGATACACTCTAAAGCATCGCAATATTTGTTGCGTTTCTGCGATGGCACCGATGATTCTGATGAAGAAGGAACTGAAGAGTCTTGGTGTACTTGTCTTTCGTCGCACGAGGATGACGACGACGAAGACGAACCTGAACAAGAATCGGACAGGCTTTGGAGGAAGCGACGTTACGAGCCGTCTCCGCCGCATACGAGCAAAAGGTTTTGTGCGGACAGTCCCCCGGGGCAGGAACGGCAGCTCGTCCCGGGCGGCAGCGGTCAGGGAACCAGCCTGGGTAATCCCGAGATGAAACAGTGGCTCAATAGATTCCAATCGTGGACGAACGCCGAAAGGATACAAGCCATTGACGCGTTGATCAGTCGTTGTGCGGCCAGCCAAGTACGGCACATGATGAAGGCGATCGAGCCACTTTTTCAACGGGATTTCATCTCGCTCCTGCCCAAGGAACTGGCCCTTACCGTTTTAGGGTACCTGCAGCCGATGGACTTGCTGAGAGCCGCCCAAACTTGCCGATACTGGAGGTTCCTAGCTGATGATAACCTGCTCTGGAAGGAGCAGTGCCGTCGCATTGGTATCACCACTCTGAAGAAGACTCCTCGTTCGCTTCCCCGATGCGCGAGTCCGTGGAAGGCGGCTTACATGCGCCAGTATCTGATAGAGGACAACTGGCTTCACAAGCCGGTCAGCAACCCTATTGTGATGCGGGGCCATGATGATTACGTCATAACTTGCCTCCAGTTCTACGGGAATCGTATCCTGAGCGGGAGTGACGATGCCACTTTGAAGGTCTGGTCGGCTATAACTGGCAAGTGTCTCCGTACTCTAGTGGGTCACTCGGGCGGGGTGTGGTCGTCGCAAATGATCGGTGACTTGGTGATCAGCGGCTCGACCGATCGAACCCTGCGCGTTTGGAACGCTAAGAGCGGACAGTGCTTGAAGGTGCTCGCCGGTCACACGTCCACCGTACGTTGTATGCATCTGCATCAGAACAAGGTCGTGTCCGGTTCCCGGGACGCCACACTCCGCGTGTGGTCGATACCGGACGGCCGCTGCCTGAGGGTTCTGGTCGGACATCTGGCTGCCGTACGTTGCGTACAGTACGACGGTAAGGTGGTCGTGTCCGGCGCGTACGATTACTTCGTCAAAGTATGGAATCCTGAGACCGGTGAATGTCTACACACACTGGCTGGACACACTAACAGGGTGTACAGTTTGCAGTTTGACGGTAACCATGTCGTGAGCGGATCCCTGGATACTTCTATCCGGGTTTGGGACGTGGAATCCGGTCAGCTGAAACACACGCTCATCGGTCATCAGTCCCTTACTTCTGGCATGGAGCTGCAGTCCAATATCCTTGTCTCCGGCAATGCTGATTCTACAGTTAAAGTGTGGGATATCACGACGGGACAGTGTCTGCATACCCTTGCCGGTACGAACAAACACCAATCGGCCGTCACTTGCCTTCAGTCGTCGAATCGCTTCGTGATCACGTCCTCCGACGACGGCACCGTCAAGCTGTGGGACGTTCGAACCGGCGAGTTCATACGGAACCTCGTCGAATTGTCATCGGGCGGCTCCGGAGGCGTAGTCTGGCGCATCAAGGCGTCCGCGACCAAACTCATATGCGCGGTCGGCTCTCGTAACGGAACCGAGGAGACGAAACTCCTGGTGCTCGACTTCGACGTGCCCGGGGCCTGCCGCAAGTGCGACGAATAG
Protein
MESSCSHTSCNIYDGANRVFEINERKTDGAASVVDKGGHSRSTGRQQIDDIEREDFDEENRIINQCSSMIVDGKLAAASHYSGNLSSANSSLASSSETISTLSNIITNYSLPGCSKDCEDSNTTIKNMISRKCDDPQTDENNPDFMQKLLISGVQDNVDFPKGKMYKVDQEGYCENDGEGCDIERVGGPAGRTSSNASSIGSASSDSTKDFNVPSTSNAERLLGIEDRSLEDRRNDPIHSKASQYLLRFCDGTDDSDEEGTEESWCTCLSSHEDDDDEDEPEQESDRLWRKRRYEPSPPHTSKRFCADSPPGQERQLVPGGSGQGTSLGNPEMKQWLNRFQSWTNAERIQAIDALISRCAASQVRHMMKAIEPLFQRDFISLLPKELALTVLGYLQPMDLLRAAQTCRYWRFLADDNLLWKEQCRRIGITTLKKTPRSLPRCASPWKAAYMRQYLIEDNWLHKPVSNPIVMRGHDDYVITCLQFYGNRILSGSDDATLKVWSAITGKCLRTLVGHSGGVWSSQMIGDLVISGSTDRTLRVWNAKSGQCLKVLAGHTSTVRCMHLHQNKVVSGSRDATLRVWSIPDGRCLRVLVGHLAAVRCVQYDGKVVVSGAYDYFVKVWNPETGECLHTLAGHTNRVYSLQFDGNHVVSGSLDTSIRVWDVESGQLKHTLIGHQSLTSGMELQSNILVSGNADSTVKVWDITTGQCLHTLAGTNKHQSAVTCLQSSNRFVITSSDDGTVKLWDVRTGEFIRNLVELSSGGSGGVVWRIKASATKLICAVGSRNGTEETKLLVLDFDVPGACRKCDE

Summary

Uniprot
A0A2A4K2G0   A0A2A4K235   A0A2W1BLX0   A0A212FKL4   A0A194QXR3   A0A194PG49   + More
Pubmed
28756777    22118469    26354079   
EMBL
NWSH01000237    PCG78118.1    PCG78119.1    KZ149976    PZC75918.1    AGBW02008029    + More
OWR54287.1    KQ460953    KPJ10267.1    KQ459605    KPI92003.1   
Proteomes
UP000218220    UP000007151    UP000053240    UP000053268   
Pfam
PF00400   WD40        + More
PF12937   F-box-like
Interpro
IPR015943   WD40/YVTN_repeat-like_dom_sf        + More
IPR001810   F-box_dom       
IPR017986   WD40_repeat_dom       
IPR001680   WD40_repeat       
IPR036047   F-box-like_dom_sf       
IPR020472   G-protein_beta_WD-40_rep       
IPR019775   WD40_repeat_CS       
IPR036322   WD40_repeat_dom_sf       
SUPFAM
SSF50978   SSF50978        + More
SSF81383   SSF81383       
Gene 3D
2.130.10.10    
ProteinModelPortal
A0A2A4K2G0   A0A2A4K235   A0A2W1BLX0   A0A212FKL4   A0A194QXR3   A0A194PG49   + More
PDB
5V4B     E-value=0,     Score=1731

Ontologies

KEGG
101739053    K10260 F-box and WD-40 domain protein 7 | (RefSeq) F-box/WD repeat-containing protein 7
PATHWAY
04120    Ubiquitin mediated proteolysis - Bombyx mori (domestic silkworm)
GO
GO:0005515   GO:0008270   GO:0006355   GO:0043565   GO:0007166   GO:0016020   GO:0019752   GO:0030246   GO:0007169   GO:0016021  

Topology

Length:
808
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.002
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00011
outside
1  -  808
 
 

Population Genetic Test Statistics

Pi
14.062477
Theta
16.076695
Tajima's D
-2.680985
CLR
0.764945
CSRT
4.99975001249937e-05
Interpretation
Uncertain
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