Gene

KWMTBOMO00585

Pre Gene Modal

BGIBMGA012234

Annotation

PREDICTED:_LIM_homeobox_transcription_factor_1-beta_[Bombyx_mori]

Location

Bomo_Chr1(-):17427703-17429182      View in EpiBrowser

Transcription factor

Homeobox

Location in the cell

Nuclear   Reliability : 4.221

CDS

ATGCGGGTCGGAGAGCTCTCCTGGCATGAGCACTGCCTCAGCTGCTGTGTCTGCGGGTGTCCGCTTGCTCACACCTGCTACACCAGAAACGCGAAACTTTACTGCAAACCCGATTACGATAGATTGTTCGGGGTGAAGTGTACAAGATGCGGCGACCGTCTTCTCCCACAAGAAATGGTAATGAGGGCCCAACAGTATGTCTTTCACATACAATGCTTCGTCTGCGTGATGTGTTGCCAACCGCTACAGAAGGGCGAACAGTACGTTATTCGCGCTGGTCAAATATTTTGCAGGCAAGACTTTGAAAAAGAAATGTATCTAATGCAGCATGCTGAAGATGACATGATTATCGATGATTCAGAGCGTCCTAGAGACGGACGACGAGGCCCGAAGCGTCCTCGTACCATCCTTACTTCTGCCCAACGCAGGCAGTTCAAAGCGTCTTTCGAGGTCAGTCCGAAGCCTTGCAGGAAGGTCCGAGAGGCACTCGCTAAAGACACCGGTCTGAGTGTTAGGGTCGTGCAAGTTTGGTTTCAAAATCAACGAGCTAAAATGAAAAAGATCCAACGCAAAGCCAAACAAGAAGGCGACAAAAACGGTGACAAAGAGAAAGATAAGGACGAAAAATCGATCAAACAAGAGTCGCCGACAAGCGAGCACGGAAATTATTTAGGTCTTGATGGATCATACTCTGCCTCCAGCCAGCCATTAAATCCTAACCTTCCATATTCGCCCGATGATTACCCAGCGCATTCAGGGGACAGCTTTTGCAGTTCCGACATATCCCTCGATGGCAGCAATTTCGACCAGCTAGACGAGGGCGCGTCCGACACAATGAGCCTGCAGAATCTGGAAGTGCAGCACCACAATCACCAGCATCCTGGCCACTCTGCACACGAGCCACTGAACCTCGGAACCGGAGCCGTCGTTAACCCGATCGACAAACTTTACCTCATGCAGAATTCATATTTTAGTACTGATCATTGA

Protein

MRVGELSWHEHCLSCCVCGCPLAHTCYTRNAKLYCKPDYDRLFGVKCTRCGDRLLPQEMVMRAQQYVFHIQCFVCVMCCQPLQKGEQYVIRAGQIFCRQDFEKEMYLMQHAEDDMIIDDSERPRDGRRGPKRPRTILTSAQRRQFKASFEVSPKPCRKVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQEGDKNGDKEKDKDEKSIKQESPTSEHGNYLGLDGSYSASSQPLNPNLPYSPDDYPAHSGDSFCSSDISLDGSNFDQLDEGASDTMSLQNLEVQHHNHQHPGHSAHEPLNLGTGAVVNPIDKLYLMQNSYFSTDH

Uniprot

H9JRS4   A0A2W1BNR6   A0A2A4K392   A0A194QXU1   A0A212EUK7   A0A2H1WQC0   + More
A0A0L7KYQ6   A0A194PMZ2   A0A1B0EU68   D6WBR2   A0A1W4XSU6   N6UMC8   T1HRI1   A0A067QQJ0   A0A2J7RCL4   A0A1B6DR60   A0A336M8R0   A0A1B0D5H1   E0VED2   A0A2P8ZNG4   A0A0M3QWK7   B4J337   B4LFF7   B4L065   A0A0P9C1X1   B3M7T7   B4GR87   M9PCA3   Q9VTW5   Q2M0Q7   A0A0J9RVB3   B4QR90   B4N3J1   A0A3B0JRG4   B4HFL5   A0A0K8W3I9   B4PGC0   A0A0R1DZ32   A0A0L0BYU1   A0A1I8MC98   B3NH92   A0A0Q5UIR0   A0A1J1J714   A0A1A9WD04   A0A1I8QCX9   A0A1W4UUP6   A0A1W4UH56   A0A226EHG3   B0W5E2   A0A2H8TU69   E2BM86   A0A026VZM4   Q17LD3   A0A1B0G3P6   A0A1S4EYJ8   E1ZXG4   A0A1B0BXP5   J9K3G8   A0A1B0A6T7   A0A1A9URU1   A0A195DHV1   F4WKB4   A0A151XAX7   A0A158NQJ4   A0A195D550   A0A0J7KM82   A0A0P6ICS0   A0A0M8ZRP0   A0A1D2NML9   A0A0P6C593   A0A195ERP0   A0A2A3E4R9   A0A195BS25   A0A2S2NHT4   A0A1A9YKR4   A0A182J7Z7   A0A084W9J2   A0A0P5ZX32   K7IQU9   A0A154PN88   A0A182HAX6   U4U621   W5J7V2   A0A1S3H8H1   A0A146LC18   A0A0A9X6B9   A0A1S3JYN4   A0A1S3JXZ8   A0A1B6DS86   A0A182FH98  

Pubmed

19121390    28756777    26354079    22118469    26227816    18362917    + More
19820115    23537049    24845553    20566863    29403074    17994087    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    15632085    22936249    17550304    26108605    25315136    20798317    24508170    30249741    17510324    21719571    21347285    27289101    24438588    20075255    26483478    20920257    23761445    26823975    25401762   

EMBL

BABH01017223    KZ149976    PZC75921.1    NWSH01000237    PCG78122.1    KQ460953    + More
KPJ10358.1    AGBW02012361    OWR45166.1    ODYU01009905    SOQ54634.1    JTDY01004236    KOB68413.1    KQ459599    KPI94363.1    AJWK01011307    KQ971314    EEZ99306.1    APGK01026589    APGK01026590    KB740635    ENN79872.1    ACPB03000674    KK869568    KDR06680.1    NEVH01005885    PNF38560.1    GEDC01009122    JAS28176.1    UFQT01000253    SSX22428.1    AJVK01025245    AJVK01025246    DS235090    EEB11738.1    PYGN01000010    PSN58019.1    CP012525    ALC44319.1    CH916366    EDV96108.1    CH940647    EDW69255.2    CH933809    EDW18011.2    CH902618    KPU77648.1    EDV38810.1    CH479188    EDW40272.1    AE014296    AGB94447.1    BT003467    AAF49930.2    AAO39470.1    CH379069    EAL30873.2    CM002912    KMY99214.1    CM000363    EDX10220.1    KMY99213.1    CH964095    EDW79196.2    OUUW01000002    SPP76289.1    CH480815    EDW41246.1    GDHF01006660    JAI45654.1    CM000159    EDW94284.1    KRK01742.1    JRES01001238    KNC24404.1    CH954178    EDV51549.1    KQS43846.1    CVRI01000067    CRL06681.1    LNIX01000003    OXA57075.1    DS231842    EDS35262.1    GFXV01005694    MBW17499.1    GL449158    EFN83212.1    KK107648    QOIP01000008    EZA48329.1    RLU19974.1    CH477216    EAT47529.1    CCAG010015899    GL435038    EFN74141.1    JXJN01022295    JXJN01023514    ABLF02035865    ABLF02035867    KQ980824    KYN12478.1    GL888199    EGI65338.1    KQ982335    KYQ57504.1    ADTU01023344    ADTU01023345    ADTU01023346    KQ976885    KYN07554.1    LBMM01005583    KMQ91402.1    GDIQ01006416    JAN88321.1    KQ435922    KOX68586.1    LJIJ01000005    ODN06459.1    GDIP01005670    LRGB01002451    JAM98045.1    KZS07658.1    KQ982021    KYN30544.1    KZ288372    PBC26727.1    KQ976419    KYM89314.1    GGMR01003853    MBY16472.1    ATLV01021825    KE525324    KFB46886.1    GDIP01038505    JAM65210.1    KQ434998    KZC13309.1    JXUM01123612    KQ566736    KXJ69875.1    KB631996    KI210453    ERL87788.1    ERL96272.1    ADMH02002078    ETN59458.1    GDHC01012726    JAQ05903.1    GBHO01029231    JAG14373.1    GEDC01008775    JAS28523.1   

Proteomes

UP000005204    UP000218220    UP000053240    UP000007151    UP000037510    UP000053268    + More
UP000092461    UP000007266    UP000192223    UP000019118    UP000015103    UP000027135    UP000235965    UP000092462    UP000009046    UP000245037    UP000092553    UP000001070    UP000008792    UP000009192    UP000007801    UP000008744    UP000000803    UP000001819    UP000000304    UP000007798    UP000268350    UP000001292    UP000002282    UP000037069    UP000095301    UP000008711    UP000183832    UP000091820    UP000095300    UP000192221    UP000198287    UP000002320    UP000008237    UP000053097    UP000279307    UP000008820    UP000092444    UP000000311    UP000092460    UP000007819    UP000092445    UP000078200    UP000078492    UP000007755    UP000075809    UP000005205    UP000078542    UP000036403    UP000053105    UP000094527    UP000076858    UP000078541    UP000242457    UP000078540    UP000092443    UP000075880    UP000030765    UP000002358    UP000076502    UP000069940    UP000249989    UP000030742    UP000000673    UP000085678    UP000069272   

PRIDE

H9JRS4    Q9VTW5   

Pfam

PF00046   Homeodomain        + More
PF00412   LIM

Interpro

IPR017970   Homeobox_CS        + More
IPR001356   Homeobox_dom       
IPR001781   Znf_LIM       
IPR009057   Homeobox-like_sf       

SUPFAM

SSF46689   SSF46689       

CDD

cd00086  homeodomain

ProteinModelPortal

H9JRS4   A0A2W1BNR6   A0A2A4K392   A0A194QXU1   A0A212EUK7   A0A2H1WQC0   + More
A0A0L7KYQ6   A0A194PMZ2   A0A1B0EU68   D6WBR2   A0A1W4XSU6   N6UMC8   T1HRI1   A0A067QQJ0   A0A2J7RCL4   A0A1B6DR60   A0A336M8R0   A0A1B0D5H1   E0VED2   A0A2P8ZNG4   A0A0M3QWK7   B4J337   B4LFF7   B4L065   A0A0P9C1X1   B3M7T7   B4GR87   M9PCA3   Q9VTW5   Q2M0Q7   A0A0J9RVB3   B4QR90   B4N3J1   A0A3B0JRG4   B4HFL5   A0A0K8W3I9   B4PGC0   A0A0R1DZ32   A0A0L0BYU1   A0A1I8MC98   B3NH92   A0A0Q5UIR0   A0A1J1J714   A0A1A9WD04   A0A1I8QCX9   A0A1W4UUP6   A0A1W4UH56   A0A226EHG3   B0W5E2   A0A2H8TU69   E2BM86   A0A026VZM4   Q17LD3   A0A1B0G3P6   A0A1S4EYJ8   E1ZXG4   A0A1B0BXP5   J9K3G8   A0A1B0A6T7   A0A1A9URU1   A0A195DHV1   F4WKB4   A0A151XAX7   A0A158NQJ4   A0A195D550   A0A0J7KM82   A0A0P6ICS0   A0A0M8ZRP0   A0A1D2NML9   A0A0P6C593   A0A195ERP0   A0A2A3E4R9   A0A195BS25   A0A2S2NHT4   A0A1A9YKR4   A0A182J7Z7   A0A084W9J2   A0A0P5ZX32   K7IQU9   A0A154PN88   A0A182HAX6   U4U621   W5J7V2   A0A1S3H8H1   A0A146LC18   A0A0A9X6B9   A0A1S3JYN4   A0A1S3JXZ8   A0A1B6DS86   A0A182FH98  

PDB

4JCJ     E-value=2.69521e-19,     Score=233

KEGG

101745307    K09371 LIM homeobox transcription factor 1 | (RefSeq) LIM homeobox transcription factor 1-beta

GO

GO:0006355   GO:0043565   GO:0046872   GO:0005634   GO:0000981   GO:0000977   GO:0045944   GO:0030182   GO:0016740   GO:0003677   GO:0008270   GO:0007166   GO:0016020   GO:0019752   GO:0030246   GO:0007169   GO:0016021  

Subcellular location

Nucleus  

Length:

328

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01542

Exp number, first 60 AAs:

0.00735

Total prob of N-in:

0.01226

outside

1  -  328

 

 

Pi

12.979526

Theta

17.859409

Tajima's D

-0.816499

CLR

0

CSRT

0.175141242937853

Interpretation

Uncertain