Gene

KWMTBOMO00578  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA012239

Annotation

PREDICTED:_uncharacterized_protein_LOC101745012_[Bombyx_mori]

Location

Bomo_Chr1(-):17212309-17284383      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.819

CDS

ATGGAGGCAGAGGACGTGGCAGACAATGAATTCTTGGAAGTTAAGCCCAAAGATCTCGGTCTTGATGGACATCTACGACGACTGAAACGTGGTCTATTTGACAGTTGGTTTTCGCCTTTTGACACGTCTTCGACTACTGAGGCGCCCCCTGAAAACATCGAGTCGATCACTGAAGACGATGCGAGCTTCGACAGGAAAGACGACGATTTGGACACCGAAGGCTCCGGCTACCCGGAGAACAGAGTCGAGCCAGAAATTAAAGAAAAGACCCTTCGTGTTACCTTCGTAGTCATGGAACCATATCGAGAAGAGTACGTCAACAGAGATTCGATACAGTTCCAGAACTTATCCAAATCTCTTGCTGATGAAGTCAATAAGCTCTTCGAATCTTTGCCTGGCACACAAAAGGCTAGCCTAGTGAGAATCCAGTCTTGCGTCTCCGACGACTTCTCCTGCAAAGTTACTCTGGACATTGTAACAACTGGATACGACAACACGGACGTGATCGCTCAAACCCTGAGAGACCACATCAGGAACCGAAGCATGCTAGGGAAGGTCACAGTAAACGATAACGATTTCAGCGCTTTTGTTATTGATTCAGCAAACTTCACTTGTCGCCCTAATGAGATCCAGTGCGGCGACGGTGCTTGCGTCCCAGAATCGGCAAGATGTAATAATGAAAGGGACTGTAGCGATTGGTCCGACGAAAAGAACTGCCCTATTGAAAACATTCCCGATGAGGAACAAGAACAGACCTTAGAGGCTGAAACAGAAAGTTATCGTCCTATCGAACGTGGCGATCAGCCCTTCGCATCTGAAACGACCACGCCTTATTATGACGAAGACGAAGTTACAGTTCCCTATCCTGAACAATTTACATGTTCATTGGACGAGTTCAAATGCGATGAGACCCGTTGCATCAGACGGGACGAGGTGTGCAACAACATCAACGACTGTCACGATGGAACTGACGAAGTGGACTGCGCAAACCTTGACCACAAGATGGCATTTGAGTTGTACATGTGGCCTCCTCGAGTCCCTTAA

Protein

MEAEDVADNEFLEVKPKDLGLDGHLRRLKRGLFDSWFSPFDTSSTTEAPPENIESITEDDASFDRKDDDLDTEGSGYPENRVEPEIKEKTLRVTFVVMEPYREEYVNRDSIQFQNLSKSLADEVNKLFESLPGTQKASLVRIQSCVSDDFSCKVTLDIVTTGYDNTDVIAQTLRDHIRNRSMLGKVTVNDNDFSAFVIDSANFTCRPNEIQCGDGACVPESARCNNERDCSDWSDEKNCPIENIPDEEQEQTLEAETESYRPIERGDQPFASETTTPYYDEDEVTVPYPEQFTCSLDEFKCDETRCIRRDEVCNNINDCHDGTDEVDCANLDHKMAFELYMWPPRVP

Uniprot

H9JRS9   A0A1E1W5F9   A0A1E1VXS1   A0A194PG74   A0A194QZ87   A0A139WI18   + More
A0A139WI17   A0A139WIN8   A0A139WIA3   A0A1Y1MVG2   A0A1Y1N267   A0A1V1FQN6   A0A087ZY95   A0A1B6H0Y4   A0A1B6EZM0   A0A1B6FYY0   A0A195AUX2   A0A224XSJ6   A0A0L7QT60   A0A151WH30   A0A195FWA5   E9IR36   A0A158NND7   A0A195BZ34   A0A310SDI3   A0A1B6KPM4   A0A026X1H8   F7CCA0   A0A3L8DHC7   A0A1B6HNG0   A0A2A3EF83   A0A1B6KBT2   A0A1L8FP59   A0A1B6IQI8   A0A1B6IHQ9   A0A1B6J9M1   A0A0M9A216   I3KII9   A0A1W5AS91   A0A087T6N4   A0A3Q0IR92   I3KIJ0   A0A2I4CIQ1   A0A3L8RXT3   A0A3B4C5S2   A0A2U9C270  

Pubmed

19121390    26354079    18362917    19820115    28004739    28410430    + More
21282665    21347285    24508170    20431018    30249741    27762356    25186727    30282656   

EMBL

BABH01017209    GDQN01008875    JAT82179.1    GDQN01011583    JAT79471.1    KQ459605    + More
KPI92028.1    KQ460953    KPJ10290.1    KQ971342    KYB27640.1    KYB27638.1    KYB27637.1    KYB27639.1    GEZM01019399    JAV89661.1    GEZM01019402    JAV89657.1    FX985450    BAX07463.1    GECZ01001452    JAS68317.1    GECZ01026263    JAS43506.1    GECZ01014383    JAS55386.1    KQ976738    KYM75825.1    GFTR01004924    JAW11502.1    KQ414756    KOC61661.1    KQ983136    KYQ47141.1    KQ981208    KYN44706.1    GL765043    EFZ16969.1    ADTU01021233    ADTU01021234    ADTU01021235    ADTU01021236    ADTU01021237    ADTU01021238    ADTU01021239    ADTU01021240    ADTU01021241    ADTU01021242    KQ978457    KYM93872.1    KQ773953    OAD52335.1    GEBQ01026592    JAT13385.1    KK107031    EZA62102.1    AAMC01127504    AAMC01127505    AAMC01127506    AAMC01127507    AAMC01127508    AAMC01127509    AAMC01127510    AAMC01127511    AAMC01127512    QOIP01000008    RLU19726.1    GECU01031496    JAS76210.1    KZ288266    PBC30144.1    GEBQ01031102    JAT08875.1    CM004478    OCT73376.1    GECU01018549    JAS89157.1    GECU01021259    JAS86447.1    GECU01011877    JAS95829.1    KQ435760    KOX75587.1    AERX01002528    AERX01002529    KK113670    KFM60773.1    QUSF01000139    RLV89744.1    CP026253    AWP10153.1   

Proteomes

UP000005204    UP000053268    UP000053240    UP000007266    UP000005203    UP000078540    + More
UP000053825    UP000075809    UP000078541    UP000005205    UP000078542    UP000053097    UP000008143    UP000279307    UP000242457    UP000186698    UP000053105    UP000005207    UP000192224    UP000054359    UP000079169    UP000192220    UP000276834    UP000261440    UP000246464   

PRIDE

H9JRS9   

Pfam

PF00057   Ldl_recept_a        + More
PF01390   SEA
PF00053   Laminin_EGF
PF00052   Laminin_B
PF13895   Ig_2
PF00047   ig
PF07679   I-set
PF00054   Laminin_G_1
PF00008   EGF
PF02210   Laminin_G_2

Interpro

IPR023415   LDLR_class-A_CS        + More
IPR036055   LDL_receptor-like_sf       
IPR002172   LDrepeatLR_classA_rpt       
IPR000082   SEA_dom       
IPR036364   SEA_dom_sf       
IPR003598   Ig_sub2       
IPR013032   EGF-like_CS       
IPR000742   EGF-like_dom       
IPR036179   Ig-like_dom_sf       
IPR003599   Ig_sub       
IPR007110   Ig-like_dom       
IPR013783   Ig-like_fold       
IPR000034   Laminin_IV       
IPR002049   Laminin_EGF       
IPR013151   Immunoglobulin       
IPR013098   Ig_I-set       
IPR009030   Growth_fac_rcpt_cys_sf       
IPR001881   EGF-like_Ca-bd_dom       
IPR013320   ConA-like_dom_sf       
IPR001791   Laminin_G       
IPR000152   EGF-type_Asp/Asn_hydroxyl_site       
IPR013106   Ig_V-set       

SUPFAM

SSF57424   SSF57424        + More
SSF82671   SSF82671       
SSF48726   SSF48726       
SSF57184   SSF57184       
SSF49899   SSF49899       

Gene 3D

4.10.400.10     2.60.40.10     3.30.70.960    

CDD

cd00112  LDLa

ProteinModelPortal

H9JRS9   A0A1E1W5F9   A0A1E1VXS1   A0A194PG74   A0A194QZ87   A0A139WI18   + More
A0A139WI17   A0A139WIN8   A0A139WIA3   A0A1Y1MVG2   A0A1Y1N267   A0A1V1FQN6   A0A087ZY95   A0A1B6H0Y4   A0A1B6EZM0   A0A1B6FYY0   A0A195AUX2   A0A224XSJ6   A0A0L7QT60   A0A151WH30   A0A195FWA5   E9IR36   A0A158NND7   A0A195BZ34   A0A310SDI3   A0A1B6KPM4   A0A026X1H8   F7CCA0   A0A3L8DHC7   A0A1B6HNG0   A0A2A3EF83   A0A1B6KBT2   A0A1L8FP59   A0A1B6IQI8   A0A1B6IHQ9   A0A1B6J9M1   A0A0M9A216   I3KII9   A0A1W5AS91   A0A087T6N4   A0A3Q0IR92   I3KIJ0   A0A2I4CIQ1   A0A3L8RXT3   A0A3B4C5S2   A0A2U9C270  

PDB

6BYV     E-value=6.82493e-08,     Score=135

KEGG

101745012    no KO assigned | (RefSeq) uncharacterized LOC101745012

GO

GO:0009887   GO:0005886   GO:0009888   GO:0016021   GO:0005509   GO:0005604   GO:0016477   GO:0007519   GO:0001935   GO:0043534   GO:0001525   GO:0034446   GO:0005515   GO:0004190   GO:0006508   GO:0007166   GO:0016020   GO:0019752   GO:0030246   GO:0007169  

Length:

347

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01769

outside

1  -  347

 

 

Pi

25.864924

Theta

26.50685

Tajima's D

0.077424

CLR

0.050093

CSRT

0.395530223488826

Interpretation

Uncertain