Gene

KWMTBOMO00572

Annotation

endonuclease-reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr1(+):16929274-16932427      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.347

CDS

ATGAGCAGGTCTTATAAGAGTAAAAGTGTGCGTTGCGATCCGAGTAGCGACCGGCGCCCTAAGTTGTCCGGGAACCGGGGTGTGAAATTGGTTACCGGCCATGGGGGAGCAGGCGACCAGGCACCTCATGGAAATTATGCCACTGGAAGAAGAACAACAAAACTCCAATTACGTAATGATATCCGCATCGGAACGTGGAATGTGAGAGGCCTCATCGATGAAGGAAAGCTCCACGTACTGGATCACGAACTCGAGCGATGTAATACGGTTATTACGGGACTAAGTGAGACGCATTGGAAAGAGAGTGGGCACAGAAACCTGGAGAACCACACCATCTACTTCTCAGGAAATGAATTATCTAGCTTTGCTGGAGTGGGTATCGCAATACCCAAGCTCTGGACTGAGTCGGTCCTGGGCTATAATCCTGTCAGCGACAGGATCATCACCATGAAACTCAGTGCTTCACCATGTGCACTGAATATCATTCAGGTCTACGCCCCTACTAGCGCTGCTACTGAGGAAAAAATTGAGAGCTTCTATAATCAACTCGAGGCTTGTATAAACAACATCCCAAAAAGAGAGATACTGATGATTATCGGCGACTTTAACGCAAAGGTTGGAACCACTGTTTTGGATGTAGGGTTACGAAATATCGTGGGTCACTACGGTCTTGGTTGCAGGAACAGTAGAGGAGAACGGTTGATTCAGTTTGCGGCAGATAATAACTTAACAATAATGAATACAGCCTTCAAACACCACCCCAGAAGACTGTATACTTGGACATCCCCAAACGGAGAGCACCGCAACCAAATCGACTATATACTGATCAAGACAAGATGGAGAAGCTCAATAACCAACGCTCATACACTACCGGGAGCTGATGTCACGTCGGATCACCAGCTACTAATATGCAATATGAGGATCAGACTGCGTAGACCTATAATTAGAAAAACTGTCAAACGCCTAGAAGTCATTGATAGAAACTCGTTTGTCCAGTCTCTTCAGGATATGGAACAGTGCTGGTACGAAAACTGCAGCAAGGAAGTGAGCGTTGATCACCTCTGGCAATCTACCGTGCAATTTATAAAAGATGTCGTGCACGAATCACAGCCCAAAAAGAAATCCAAGAAAAGGCAGCATTGGATGTCTACCGAGACCTGGGACTTAATTGAGAAGCGTAGAGAGCTTAAGGCTGGCGGTGTCAGAATGCAGGAGTTGAACGTCATGAGCTCCGCCATACAGGCTGCTTGCCGTCGTGACCGAAACACAGCGCTACAATCAATATGTGAAGAGGTTGAAAGGCATTCTCAAAATTTTGAAACAAAAGATTTACACATGAAAATCAGACTTATAACCCGTCAATTTAAGCCAAAGACTTGGGCTATTGAGAATGCGTCTGGAGATACTGTCACTGAGATCAAAAAGATTGTTAGTGCTTGGAAAGACTATTGCAAGTCTCTGTTTACTGACACCACAACAAAGATCTCAATGACCTACAGTGAACCCTCGGAACTGGAGCCGATGCCTTTGAAGGACGAGGTGCGAGCAGCAATCAACCACCTTAAACGGAATAAGGCTGTAGGTTTTGATGAAATCCCCATCGAGACAATAAAAGCCATGGGGGAAATCGGAGTGGATATACTGCACATCATCTGTTGTCGAATTTGGGTCACTGGAGTTTGGCCGAGCGATTGGTCACATTCGATATTCATTCCACTTCACAAAAAGGGATCAACGAAGAAGTGCAATAACTACAGACTAATTTCTCTCGTATCCCACGCCAGTAAAGTCATGCTGCACATAATTAACACGAGGCTCCAAGGTTACTTGTCCCGAGAGATCGCCCCCGAGCAAGCAGGATTTGTAAAAGGTCGAGGCACAAGAGAGCAACTACTCGTAATGCGGCAAATTGTAGAAAAGGCCAGAGAATTTAATATTAGCCTATATGTGTGCTTCGTGGATTTCCGAAAGGCTTTTGATACCGTCAAGTGGTGGAAGCTGTGGTTGGTACTGACGGAAATGGGTGTACCGCAACATCTTGTACACACCATCAGACGTCTGTACGAAGATGGCACGGCCGCTGTTCGTGTTGACAGTATTGACTCCGAACGCTTCAGCACACAGGCAGGCGTTAGGCAGGGCTGCATACTATCTCCTCTTTTATTTAATATATACACAGAGTATATAATGCGGATAGTTCTTGATGATTGGGATAAAGGAATATCCGTTGGTGGTCGGAAAATATCAAACTTGAGATACGCCGATGATACTACCCTCTTGGCGTCAACCAGAGACGAAATCGAGGTGCTTCTTCGCCGGCTGGAGACTACAGCGTTGGATTTTGGACTTGCGATCAATCGTGATAAGACCAAAATGATGATCGTAGATCGTGCTAACATCAACCAACCGGAAGTCCAACATATAGCGGGATGCGAGGTAGTTAATAGCTATGTATATCTAGGCTCCACTATCACCAACGCTGGAGGCTGCGAAGATGAGATCCGAAGACGTTGCGCCGTGACAAGATCCTCAGTTGAGAGGCTAACAAAGATTTGGAGAGACCGCAGAATAACCAAAAATACAAAAGTTCGGTTAATGAGATGCCTGGTCTTTCCAATCTTTCTGTATGGGGCTGAGACGTGGACGCTGAGGATGCAAGACCGTCGTAAGATCGACGCACTAGAAATGTGGTGTTGGAGACGTCTCCTCAGAATTCCGTGGACCGCGCACCGTACCAACATTTCGATCCTGAAAGAGCTCAACATCAAGGAGAGACTATCGTCAACAGTCCAATTACGAATCCTCAAATTCTTCGGGCACATCACTCGTAATGAGGACTCCATTGAGCGGTTGGTGGTGCAAGGGAAAGTCGAGGGCAAAAGATCTCGCGGACGATCTCCAACACGATGGACCGACCTCATAAAATCTGTTACTCACTCCAACTTAAATGCTTGCTCTCACTCTGCGAAACATCGTGCCACATGGCGTCGCATCGCGAGAGCATCGGTATCGCAGGATCCGACTGATGCATGA

Protein

MSRSYKSKSVRCDPSSDRRPKLSGNRGVKLVTGHGGAGDQAPHGNYATGRRTTKLQLRNDIRIGTWNVRGLIDEGKLHVLDHELERCNTVITGLSETHWKESGHRNLENHTIYFSGNELSSFAGVGIAIPKLWTESVLGYNPVSDRIITMKLSASPCALNIIQVYAPTSAATEEKIESFYNQLEACINNIPKREILMIIGDFNAKVGTTVLDVGLRNIVGHYGLGCRNSRGERLIQFAADNNLTIMNTAFKHHPRRLYTWTSPNGEHRNQIDYILIKTRWRSSITNAHTLPGADVTSDHQLLICNMRIRLRRPIIRKTVKRLEVIDRNSFVQSLQDMEQCWYENCSKEVSVDHLWQSTVQFIKDVVHESQPKKKSKKRQHWMSTETWDLIEKRRELKAGGVRMQELNVMSSAIQAACRRDRNTALQSICEEVERHSQNFETKDLHMKIRLITRQFKPKTWAIENASGDTVTEIKKIVSAWKDYCKSLFTDTTTKISMTYSEPSELEPMPLKDEVRAAINHLKRNKAVGFDEIPIETIKAMGEIGVDILHIICCRIWVTGVWPSDWSHSIFIPLHKKGSTKKCNNYRLISLVSHASKVMLHIINTRLQGYLSREIAPEQAGFVKGRGTREQLLVMRQIVEKAREFNISLYVCFVDFRKAFDTVKWWKLWLVLTEMGVPQHLVHTIRRLYEDGTAAVRVDSIDSERFSTQAGVRQGCILSPLLFNIYTEYIMRIVLDDWDKGISVGGRKISNLRYADDTTLLASTRDEIEVLLRRLETTALDFGLAINRDKTKMMIVDRANINQPEVQHIAGCEVVNSYVYLGSTITNAGGCEDEIRRRCAVTRSSVERLTKIWRDRRITKNTKVRLMRCLVFPIFLYGAETWTLRMQDRRKIDALEMWCWRRLLRIPWTAHRTNISILKELNIKERLSSTVQLRILKFFGHITRNEDSIERLVVQGKVEGKRSRGRSPTRWTDLIKSVTHSNLNACSHSAKHRATWRRIARASVSQDPTDA

Uniprot

D7F162   D7F175   D7F167   D7F161   D7F172   D7F168   + More
D7F163   D5LB39   A0A2W1BNH4   D7F174   A0A0J7KGF7   H2YWZ5   D5LB38   A0A2A4JBK9   A0A2V9X8L4   W5NGM3   A0A076N1B6   W5MYT3   H3J6U9   A0A2B7ZXS2   A0A2J7RP47   A0A2J7PMJ3   A0A2J7QEJ0   A0A2J7RLI7   A0A2J7PQA3   A0A2J7QI56   A0A2J7RGX2   A0A2J7Q3T8   A0A2J7QKB0   A0A2J7PHM9   A0A2J7QH51   A0A2J7Q0C6   A0A2J7QGJ2   A0A2J7R4R4   A0A2J7QUN7   A0A2J7QGX8   A0A2J7Q2Z3   A0A2J7Q5D5   A0A2J7QGT4   A0A2J7Q6A8   A0A1W7RAL1   A0A076N3Z4   A0A2J7Q6P7   A0A2J7PTY0   A0A2J7QR01   A0A2J7PW81   A0A2J7REE7   A0A146LUY8   W5MT28   A0A2S2PMS6   W5MT59   A0A2A4JXP9   A0A2B4RLZ4   A0A2B4R8E3   A0A2J7PSH5   H3ABE5   A0A2P8ZLT6   A0A2P8YWA2   A0A2J7QCG2   A0A2P8Z488   A0A023F0F3   A0A060Q6A2   A0A2J7PT27   A0A2J7PFC5   A0A0U4HM41   A0A2J7Q6T5   A0A2J7QJJ9   A0A2P8Y2S1   A0A2P8ZFZ0   W4XQE1   A0A2P8Z313   H3A4I6   A0A2J7R8P5   A0A2J7QMC5   A0A2J7R901   A0A2J7QUD0   A0A2J7R8G1   A0A2J7RIL8   A0A2J7PX03   A0A0V0G8V1   A0A2S2PT92   Q4QQE8   A0A2J7PSI0   D7F173   A0A2J7Q7C6   A0A023EZ18   A0A0J7KMY2   D7F170   A0A2M4ACI4   C7C207   J9LFP1   A0A1B0DRK3  

Pubmed

20470440    28756777    26823975    9215903    29403074    25474469    + More
25527032    15939396   

EMBL

FJ265547    ADI61815.1    FJ265560    ADI61828.1    FJ265552    ADI61820.1    + More
FJ265546    ADI61814.1    FJ265557    ADI61825.1    FJ265553    ADI61821.1    FJ265548    ADI61816.1    GU815090    ADF18553.1    KZ150025    PZC74827.1    FJ265559    ADI61827.1    LBMM01007694    KMQ89503.1    GU815089    ADF18552.1    NWSH01001998    PCG69477.1    QIAP01000240    PYX61602.1    AHAT01008485    KF881087    AIJ27486.1    AHAT01017643    AAGJ04118689    AAGJ04161747    PDHN01000949    PGH37547.1    NEVH01002141    PNF42599.1    NEVH01023985    PNF17546.1    NEVH01015309    PNF27009.1    NEVH01002684    PNF41704.1    NEVH01022640    NEVH01008218    NEVH01005885    PNF18513.1    PNF34430.1    PNF38481.1    NEVH01013959    PNF28275.1    NEVH01003750    PNF40091.1    NEVH01019064    PNF23230.1    NEVH01013275    PNF29009.1    NEVH01025135    PNF15828.1    NEVH01014358    PNF27914.1    NEVH01019971    PNF22037.1    NEVH01018372    NEVH01014371    NEVH01011208    NEVH01002697    NEVH01002552    PNF23678.1    PNF27673.1    PNF31697.1    PNF41592.1    PNF42118.1    NEVH01007402    PNF35815.1    NEVH01023960    NEVH01010501    PNF17732.1    PNF32290.1    NEVH01014359    PNF27813.1    NEVH01019075    PNF22955.1    NEVH01017570    PNF23798.1    PNF27789.1    NEVH01017534    PNF24114.1    GFAH01000222    JAV48167.1    KF881086    AIJ27485.1    NEVH01017460    PNF24248.1    NEVH01021219    PNF19787.1    NEVH01012082    PNF31006.1    NEVH01020937    PNF20581.1    NEVH01005277    PNF39212.1    GDHC01007098    GDHC01001590    JAQ11531.1    JAQ17039.1    AHAT01016400    GGMR01018096    MBY30715.1    AHAT01010273    NWSH01000469    PCG76200.1    LSMT01000478    PFX17357.1    LSMT01001244    PFX12648.1    NEVH01021931    PNF19256.1    AFYH01236276    PYGN01000020    PSN57453.1    PYGN01000324    PSN48495.1    NEVH01016289    PNF26277.1    PYGN01000203    PSN51319.1    GBBI01004261    JAC14451.1    HE799691    CCH14900.1    NEVH01021921    PNF19488.1    NEVH01025668    PNF15041.1    KU311054    ALX81665.1    NEVH01017452    PNF24293.1    NEVH01013553    PNF28765.1    PYGN01001004    PSN38555.1    PYGN01000070    PSN55417.1    AAGJ04045270    PYGN01000219    PSN50892.1    AFYH01196306    NEVH01006721    PNF37211.1    NEVH01013215    PNF29703.1    PNF37310.1    NEVH01011186    PNF32183.1    NEVH01016335    PNF25462.1    PNF37115.1    NEVH01003500    PNF40666.1    NEVH01020865    PNF20863.1    GECL01001585    JAP04539.1    GGMR01020071    MBY32690.1    BN000794    CAJ00236.1    NEVH01021928    PNF19298.1    FJ265558    ADI61826.1    NEVH01017443    PNF24485.1    GBBI01004262    JAC14450.1    LBMM01005351    KMQ91586.1    FJ265555    ADI61823.1    GGFK01005184    MBW38505.1    FN356221    CAX83710.1    ABLF02066124    AJVK01001578   

Proteomes

UP000036403    UP000007875    UP000218220    UP000247801    UP000018468    UP000007110    + More
UP000235965    UP000225706    UP000008672    UP000245037    UP000007819    UP000092462   

PRIDE

D7F162    D7F175    D7F167    D7F161    D7F172    D7F168    + More
D7F163    D5LB39    D7F174    D5LB38    D7F173    D7F170   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF03372   Exo_endo_phos

Interpro

IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR002138   Pept_C14_p10       
IPR000637   HMGI/Y_DNA-bd_CS       
IPR027124   Swc5/CFDP2       

SUPFAM

SSF56219   SSF56219       

Gene 3D

3.60.10.10    

ProteinModelPortal

D7F162   D7F175   D7F167   D7F161   D7F172   D7F168   + More
D7F163   D5LB39   A0A2W1BNH4   D7F174   A0A0J7KGF7   H2YWZ5   D5LB38   A0A2A4JBK9   A0A2V9X8L4   W5NGM3   A0A076N1B6   W5MYT3   H3J6U9   A0A2B7ZXS2   A0A2J7RP47   A0A2J7PMJ3   A0A2J7QEJ0   A0A2J7RLI7   A0A2J7PQA3   A0A2J7QI56   A0A2J7RGX2   A0A2J7Q3T8   A0A2J7QKB0   A0A2J7PHM9   A0A2J7QH51   A0A2J7Q0C6   A0A2J7QGJ2   A0A2J7R4R4   A0A2J7QUN7   A0A2J7QGX8   A0A2J7Q2Z3   A0A2J7Q5D5   A0A2J7QGT4   A0A2J7Q6A8   A0A1W7RAL1   A0A076N3Z4   A0A2J7Q6P7   A0A2J7PTY0   A0A2J7QR01   A0A2J7PW81   A0A2J7REE7   A0A146LUY8   W5MT28   A0A2S2PMS6   W5MT59   A0A2A4JXP9   A0A2B4RLZ4   A0A2B4R8E3   A0A2J7PSH5   H3ABE5   A0A2P8ZLT6   A0A2P8YWA2   A0A2J7QCG2   A0A2P8Z488   A0A023F0F3   A0A060Q6A2   A0A2J7PT27   A0A2J7PFC5   A0A0U4HM41   A0A2J7Q6T5   A0A2J7QJJ9   A0A2P8Y2S1   A0A2P8ZFZ0   W4XQE1   A0A2P8Z313   H3A4I6   A0A2J7R8P5   A0A2J7QMC5   A0A2J7R901   A0A2J7QUD0   A0A2J7R8G1   A0A2J7RIL8   A0A2J7PX03   A0A0V0G8V1   A0A2S2PT92   Q4QQE8   A0A2J7PSI0   D7F173   A0A2J7Q7C6   A0A023EZ18   A0A0J7KMY2   D7F170   A0A2M4ACI4   C7C207   J9LFP1   A0A1B0DRK3  

PDB

5HHL     E-value=0.000866784,     Score=105

KEGG

105842503    no KO assigned | (RefSeq) uncharacterized LOC105842503

GO

GO:0004519   GO:0003964   GO:0004197   GO:0006355  

PANTHER

PTHR23227  

Length:

1010

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.47318

Exp number, first 60 AAs:

0.00018

Total prob of N-in:

0.00374

outside

1  -  1010

 

 

Pi

1.025671

Theta

1.94266

Tajima's D

-1.686282

CLR

0

CSRT

0.0264486775661217

Interpretation

Uncertain