SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO00571
Annotation
PREDICTED:_uncharacterized_protein_LOC105398649_[Plutella_xylostella]
Location in the cell
Nuclear   Reliability : 2.44
 

Sequence

CDS
ATGATGAGTCGTAAAATCGAACAGAAGACGCTGCGTGAATGGGAAGAGTGCAAAGGTCATCTTGATAAAGAAAAGTCCATTTCTTTGTCCATATTTCTCGATTTCATTCGTAACCGGGCCGATCTATTAGAAACGATGGAATTTACTCGCCCTAACCTTCCTCACACACAAGTTCAGCCACCACAGTCACCTAAAGCCGATCCCCAATTTTATAGGGCGTCAGAAATTGACATGATAATTGGATCTAATATCTTTTGGGATCTGCTCGGGACGCGAAAGATCAATCTGGGAGATAACATCTCGATCCTCTGGGAAACTCGACTTGGCTGGTTGGTGGTTTCCGGGGATCTAAGTGATGGTCATGGATATGCTCCCCTAATGTGCAACTTTACAAAACTTACAGACATTTCTCAAGATCTTGATCTCGGCGTTGATGACACTCAGAACTTGCTGTCGCGGTTCTGGCAGCTGAAGGAAGTAGGCCTTAGGTCATCATACTCCGAGGAGGCACGAAAATGTGAAGAACATTTCGTTAAAAATACGAAACGTCTAGCTGATGGTTGTTTTCGTATCGGCCTTGAATGCAGTGACAAGAACATCTCAGAGATCATCATTCACGACTTCTACGAGAATGATCTGCTCACGGGGTCTGACTCATTTCAGGAGGCGTTGGACATTAAGAAGAAAGTTGCCGCCGCAGAGCTCGCCTCCGCCAGGATGCCTCTGCGCAAGTGGAAGTCCAACGATCCTCTACTCTGTCTTACTAGTGATCCGTGCGACGATAATGCGTCGCAAAGCGCCTATCGTGCTTGCCTTTACGCGCGAAGCGCGAACGTGTATGGACGAATCAAGGTCTCGTTACTTATGGCCAAGAGGAAGGTGGCTGCATTAAAGCCAACTACGATCCCTCGGTTGGAGCTCTGTGGGGCTCTGGTAGGAGTGCGCCTCTACGAGAAGGCTATTGATTCGCTCCGGGTTCAGCTATATCCACAAGCCAGCCATTTAAGCTCTAAAGAGCTACAGAACGCTTTGAACTTGATTATTAGGAAAGCTCAGTCTGAGTCGTTCGTCGAATACAAGCTCCTAACTCAGGGACATTCGTTATCTCCTAAAAGTCCCCTCAACAAGTTCAATGTCTTTCTTGATGACGCTCAAATTATGCGTGTTGGTGGCAGGTTTGGAAACGCGTCGGAGTTTTCGTATGAGAAAAAATATCCTATAATCCTACAGTCCACTCACATTCTCACAAAACTCGTATTCAAGGCTGAACATATTAAGCTTATGCACGCTGGACCCCAACTATTATTAGCTTCTATAAGAGAAGTCTACTGGCCTATTGGCGGTCGCAATTTGGCCAAGGCCACTTACCATAATTGTATAAGATGTACTCGCATGCGAGCACAAATAGTTACTCCTCTTATGGGAAATTTACCTGTGCACCGCCTCACTCCTGGTCGCCCGTTCGAGTGTGTAGGCATCGACTACGCTGGACCCATCTCGTCCGCTAACCGCCTTGGTCGAGGTTGTAGAATCGTTAAGGTCTACATCGCGATTTTTCCCCTTACTGCAATGCCTGCTGCTGAGTACAAGGACTGCCGGCTAAGCAATCTCATCAGGTTCCAGCGGTTCGAGCTTATGCGACAACATTTTTGGGCCAGATGGTCAAAGGAATACATTAGTGAGCTGCAGCAAAGAACAAAATGGCGCACCAGTGTGGTGAAGGAAGACAATCTCCCGCCACTTAAATGGAGACTGGGCCGCATAGTAGCTGTCTATCCAGGGTCCGACGGAGTTAACCGGGTCGCAGACATTCGTACCTCAAGCGGAGTCATCAAGAGGTCTTTTAATAAGATTTGTCCCCTGATTGCGGATTAG
Protein
MMSRKIEQKTLREWEECKGHLDKEKSISLSIFLDFIRNRADLLETMEFTRPNLPHTQVQPPQSPKADPQFYRASEIDMIIGSNIFWDLLGTRKINLGDNISILWETRLGWLVVSGDLSDGHGYAPLMCNFTKLTDISQDLDLGVDDTQNLLSRFWQLKEVGLRSSYSEEARKCEEHFVKNTKRLADGCFRIGLECSDKNISEIIIHDFYENDLLTGSDSFQEALDIKKKVAAAELASARMPLRKWKSNDPLLCLTSDPCDDNASQSAYRACLYARSANVYGRIKVSLLMAKRKVAALKPTTIPRLELCGALVGVRLYEKAIDSLRVQLYPQASHLSSKELQNALNLIIRKAQSESFVEYKLLTQGHSLSPKSPLNKFNVFLDDAQIMRVGGRFGNASEFSYEKKYPIILQSTHILTKLVFKAEHIKLMHAGPQLLLASIREVYWPIGGRNLAKATYHNCIRCTRMRAQIVTPLMGNLPVHRLTPGRPFECVGIDYAGPISSANRLGRGCRIVKVYIAIFPLTAMPAAEYKDCRLSNLIRFQRFELMRQHFWARWSKEYISELQQRTKWRTSVVKEDNLPPLKWRLGRIVAVYPGSDGVNRVADIRTSSGVIKRSFNKICPLIAD

Summary

Pfam
PF05380   Peptidase_A17        + More
PF17921   Integrase_H2C2
PF18701   DUF5641
Interpro
IPR041588   Integrase_H2C2        + More
IPR012337   RNaseH-like_sf       
IPR008042   Retrotrans_Pao       
IPR040676   DUF5641       
SUPFAM
SSF53098   SSF53098       

Ontologies

GO

Topology

Length:
624
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.03716
Exp number, first 60 AAs:
0.00017
Total prob of N-in:
0.00406
outside
1  -  624
 
 

Population Genetic Test Statistics

Pi
19.727983
Theta
30.522099
Tajima's D
-1.647425
CLR
0.003606
CSRT
0.0431978401079946
Interpretation
Uncertain
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