Gene
KWMTBOMO00569
Pre Gene Modal
BGIBMGA012242
Annotation
reverse_transcriptase_[Bombyx_mori]
Location in the cell
Mitochondrial Reliability : 1.151 Nuclear Reliability : 1.133 PlasmaMembrane Reliability : 1.688
Sequence
CDS
ATGTCTCTAGGCAAACTGTATGAGCGTCTGCTCTACAAACGCCTCAGAGACTTCGTCTCATCCAAGGGCATTCTCATCGATGAACAATTCGGATTCCGTACAAATCACTCATGCGTTCAACAGGTGCACCGCCTCACGGAGCACATTCTTGTGGGGCTTAATCGACCAAAACCGTTATACACGGGAGCTCTCTTCTTCGACGTCGCAAAAGCGTTCGACAAAGTCTGGCACAACGGTTTGATTTTCAAACTATTCAACATGGGTGTGCCGGATAGTCTCGTGCTCATCATACGGGACTTCTTGTCGAACCGCTCTTTTCGATATCGAGTCGAGGGAACCCGCTCCTCCCCACGACCTCTCACAGCTGGAGTCCCGCAAGGCTCTGTCCTCTCACCCCTCCTATTTAGCTTATTCGTTAACGATATTCCCCGGTCGCCGCCGACCCATTTAGCTTTATTCGCCGACGACACGACTGTTTACTATTCCAGTAGAAACAAGTCCCTAATCGCGAAGAAGCTTCAGAGCGCAGCCCTAGCCCTAGGACAGTGGTTCCGAAAATGGCGCATAGACATCAACCCAGCGAAAAGTACTGCGGTGCTCTTTCAGAGGGGAAGCTCCACACGGATTTCCTCCCGTATTAGGAGGAGGAATCTCACACCCCCGATTACTCTCTTTAGTCAATCCATACCCTGGGCCAGGAAGGTCAAGTACCTGGGCGTTACCCTGGATGCATCGATGACATTCCGCCCGCATATAAAATCAGTCCGTGACCGTGCCGCGTTTATTCTCGGTAGACTCTACCCCATGATTTGTAAGCGGAGTAAAATGTCCCTTCGGAACAAGGTGACACTTTACAAAACTTGCATAAGGCCCGTCATGACTTACGCGAGTGTGGTGTTCGCTCACGCGGCCCGCACACACATAGACACCCTTCAATCTCTACAATCCCGCTTTTGCAGGTTAGCCGTCGGAGCTCCGTGGTTCGTGAGGAACGTTGACCTACACGACGACCTGGGCCTCGAATCTATACAGAAATACATGAAGTCAGCGTCGGAACGGTACTTCGATAAGGCTATGCGTCATGATAATCGCCTTATCGTAGCCGCCGCTGACTACTCCCCGAATCCTGATCATGCAGGAGCCAGTCACCGTCGACGCCCTAGACACGTCCTTACGGATCCATCAGATCCAATAACCTTCGCACTAGACGCCTTCAGCTCTAGGAGCAGGCTTAGGGACCTCGGTCTTTACCTACATAACGTAGTAGCTGCGAACAATTTGCGAGAACGTGTCCCCTACCAATGGTATTGTGTTTGGGCCTGGGGCGCTCCCGTTGTTATAACATCAATTTGGACTATATTAACAGCTCTTAAATATCGCGGTGAAAAAGTTCAAACGAAAGCGGTGCGGGCGGCTCTGGTACTCTTACCTCTGCTAGGAATTACAAACATTATGAATATGTTCGAAGCTCCTCTGAGCTCTGATCCGATCCGGTTTGCCGTATGGAGTTACTTAACACATTTCTTAAGATCTTTTCAAGGCTTCTTCATCGCGCTAATATACTGTTTCTTAAACGGCGAGGTGAAGCAGTGCCTGTCGAAGGCATACACCAACTACATGGCGGAGAGGGCACTCCTGGTTCGGCAGAATGCCATTTGTGTACCATCTATGGATGAAGAGCCAGCTAAAGAAAAAAAGGCAAGCTATCTGTCTTGCTGCTTCCCAAGCAAGACTGAAAAGCGAACAAGCAAAGACTACCGGGCTTGTGCTTTGGATTTAAACAAGGATGAAGAGCCAGCTAAAGAAAAAAAGGCAAGCTGTCTGTCTTTCTGCTTCCCAAGCAAGACTGAAAAGCGAACAAGCAAAGACTATCGGGCTGGTGCTTTGGATTTCAACAACACGGCCCGCGCGCGTCGTCTCGAATTGCACATGGTGAGCAATTCCCAATTGCCTACTCCACTACAATCGCCATGTCCTGCTGTGGTTCGTAGACAGATGGAATTGCAGGAGCTCAAACAATCCACTCCGCTAATTCCCCGTCGGCATATCGTGTCGGCCCCGAAGAGGGCCGTAAGGATTCCGTTTGATGACGACGATGAGGCCGTCACTAAGGAGCCCTTCTCGTGCTACGCTGATACTCTTGAAATGGCCGAACTGGGTGCGGTAAGCCCCTGGGTTTACAGGCGACGATGCTCGCCACCAGAGATGGGGATATTCGATACCTGCAGCTTGACGCGCGGCTCGTGCGATGAGCAGCCTCCTATTCATATTGAGAGGTGTATATACGCAACTAGGGCTATCGTACCGAGCTCACCCTATGTGGCTGACACTGATGCTCGTGAAGTCGGCTCGTGCGATGAGCAGTCTCCTGTTCATATTGGGGGCTATATACACGCAACTAGGGTTATCGTACCGAGCTCACCCTATGTGGCTGACACTGATGCTCGTGAAGTGTCCAAATAA
Protein
MSLGKLYERLLYKRLRDFVSSKGILIDEQFGFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFKLFNMGVPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPLTAGVPQGSVLSPLLFSLFVNDIPRSPPTHLALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPAKSTAVLFQRGSSTRISSRIRRRNLTPPITLFSQSIPWARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPVMTYASVVFAHAARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIQKYMKSASERYFDKAMRHDNRLIVAAADYSPNPDHAGASHRRRPRHVLTDPSDPITFALDAFSSRSRLRDLGLYLHNVVAANNLRERVPYQWYCVWAWGAPVVITSIWTILTALKYRGEKVQTKAVRAALVLLPLLGITNIMNMFEAPLSSDPIRFAVWSYLTHFLRSFQGFFIALIYCFLNGEVKQCLSKAYTNYMAERALLVRQNAICVPSMDEEPAKEKKASYLSCCFPSKTEKRTSKDYRACALDLNKDEEPAKEKKASCLSFCFPSKTEKRTSKDYRAGALDFNNTARARRLELHMVSNSQLPTPLQSPCPAVVRRQMELQELKQSTPLIPRRHIVSAPKRAVRIPFDDDDEAVTKEPFSCYADTLEMAELGAVSPWVYRRRCSPPEMGIFDTCSLTRGSCDEQPPIHIERCIYATRAIVPSSPYVADTDAREVGSCDEQSPVHIGGYIHATRVIVPSSPYVADTDAREVSK
Summary
Uniprot
ProteinModelPortal
PDB
6NBI
E-value=0.000592573,
Score=105
Ontologies
GO
Topology
Length:
820
Number of predicted TMHs:
3
Exp number of AAs in TMHs:
62.4118900000001
Exp number, first 60 AAs:
0.00017
Total prob of N-in:
0.01989
outside
1 - 434
TMhelix
435 - 457
inside
458 - 468
TMhelix
469 - 488
outside
489 - 502
TMhelix
503 - 525
inside
526 - 820
Population Genetic Test Statistics
Pi
18.396741
Theta
16.465506
Tajima's D
-1.716837
CLR
0.011839
CSRT
0.0346982650867457
Interpretation
Uncertain
