Gene

KWMTBOMO00555

Pre Gene Modal

BGIBMGA012340

Annotation

PREDICTED:_sodium-dependent_nutrient_amino_acid_transporter_1-like_[Bombyx_mori]

Location

Bomo_Chr1(+):16466639-16474975      View in EpiBrowser

Full name

Transporter      

Location in the cell

PlasmaMembrane   Reliability : 4.867

CDS

ATGTTTGATACCTATAAATTAAAGAAATGGATCAGTTGGCCGTTGATTCGTGCGCACTTATGCACCGTAGCAGTTGCAGTGGGTTTTACGAGCACATGGCGTGCGCCTCGAGAAGCATTCCGTTACGGCGGTCTAACATTCGCTCTGGTATTGACACTGGCATTCGTGGTGGTAGCTTTGCCGGTTGTTTTGCTACAGTTGGCTATTGGACAGCTCAGCCAGCAAGATGCCGTTGGAGTCTGGAGAGCAGTGCCGTTCTTTAAGGGTGTTGGTTATCTCCGGTTGTTGGTTACGACTTTGAGCGCAATATACACGAGTGTTTATTTATCACTAGTCATAACATATTCTTTGTACACCCTAAGTAATAATATTCCCTTCCCGGAGTGTATGGGATTCTATATTACACCGGAAATATATGTGAATGCCATGAACTCTTCAGAATGCTTAGATGAAACATTTCTAGCACCTGCAAGCGAAAAACCAGAGTATTTTTTGGCAGTGGCGCTGATTCTTATTGTACTATGGATACTGTTTCCGTTTATATTTTACAACCCGGTAAAATTTATGAAACGCATATTCTACGCACTCGGGCCCCTGATAGTATTGGTGACGTTCATAATTTTGATCGCGCACGGGGATAAAGGCAATTTGTCATCGTTCGCTCGGTCCAGTGACTGGATGAACTTTCTGCGTCCTGATATTTGGCATGGGGCTATCGTTCAAGCGTTGATATCAAGTCAGGTCGCGGGAGGGTTCCTCATATCTGCTGGAGATTCCGTTTACTCCAGCACGAACGTTCAGTGGACGGCTGTAGCTATCGTTGGCGCCAACCTATTAGCATGTTGGATAGGCATGATATTCTGGTACAGTGTTACTGGTCCTGTCAAACACACAGGAGTGCTCGCAGTTCTCGAGCAAGTATATCAAACAGCAGAAGATGACCAACTGAATAAAACGTGGACGCTACTCGTATTTGCATTGTTGTTTTTATCAGGAGTTGTTTCTACGCTAGCATTTCTTTATCCGGTTTACGATAGACTACGGCGGCTGGGAGGCCTAAAGTGGAGAGTCACTTCGATAGCGTGTTCATTGCTCGGGGCGTGTCTGTCTGTGGCGACATTGGCGGGCCGGCTACCGGCGTTGACTCTTATTGAAGACACGGCTACACCCATGTTGATAAGCTTGACTACTATTCTAGAGATACTACCTTTTATTTTTATTTACGGATGGAAACTTTTAGTGGAAGATGTAGAATTCCTCATCGGTGCCGAGCTGGTGAGATACTGGGTTTGGGGCTGGTGTGCGGCGCCGGGAGTCATTGCTCCGATGTTCGTGTGGTGGCTTACTGTCAATTCTATGGACGTTTGGGAATGGAACCAGCCACCTTGGTCAGCCAGTACTGCTTCAGTAATCGCGGTTCTAGCATTACTCATCTTCGCTATAGCCGCCGCAGTATCTGTGAAAAAACAAGTGCAGTTTGACTTTTTCGGGAAACTGCATTCCTCGTTCGTGCCATCCAGACAGTGGGGTCCCAGAGATCCGATCACTCACTACTACTGGTTGGCGTGCCGCGAGGAGACAGACCGTGGCAATGTTCCTCGATGCCGATACCAAAGACGACCACTAGGTCAACTCTCAACCAGACCCAGCTTCTTAGTTGTGCCCAATACACCACTGAAGATGGAAACAAAGCAAAGATCGAATTCTGATGATTGGTTGTACACCACTAACAGGCGAAAATATTTATCTCGCATTGTCGAACGTTACGTGGGCACCCGGAAACGGTCCAAGTCCTTGGATTGGGATGTTGCTGGAGCAGCAAAAAAATATTTAAACGTTAGTTTAGATTCCATTCTTAGTGTCAACAATAATGATGTAGTATTTAAGGGCGCTTCGGAAAAAGTACTCAAATAA

Protein

MFDTYKLKKWISWPLIRAHLCTVAVAVGFTSTWRAPREAFRYGGLTFALVLTLAFVVVALPVVLLQLAIGQLSQQDAVGVWRAVPFFKGVGYLRLLVTTLSAIYTSVYLSLVITYSLYTLSNNIPFPECMGFYITPEIYVNAMNSSECLDETFLAPASEKPEYFLAVALILIVLWILFPFIFYNPVKFMKRIFYALGPLIVLVTFIILIAHGDKGNLSSFARSSDWMNFLRPDIWHGAIVQALISSQVAGGFLISAGDSVYSSTNVQWTAVAIVGANLLACWIGMIFWYSVTGPVKHTGVLAVLEQVYQTAEDDQLNKTWTLLVFALLFLSGVVSTLAFLYPVYDRLRRLGGLKWRVTSIACSLLGACLSVATLAGRLPALTLIEDTATPMLISLTTILEILPFIFIYGWKLLVEDVEFLIGAELVRYWVWGWCAAPGVIAPMFVWWLTVNSMDVWEWNQPPWSASTASVIAVLALLIFAIAAAVSVKKQVQFDFFGKLHSSFVPSRQWGPRDPITHYYWLACREETDRGNVPRCRYQRRPLGQLSTRPSFLVVPNTPLKMETKQRSNSDDWLYTTNRRKYLSRIVERYVGTRKRSKSLDWDVAGAAKKYLNVSLDSILSVNNNDVVFKGASEKVLK

Similarity

Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.

Uniprot

A0A2H1WUH2   A0A2A4JU52   A0A2A4JUW4   A0A2W1BHG8   A0A194PFI0   A0A212EQK9   + More
A0A194R384   A0A194PIN1   A0A194QNJ1   A0A2H1VKR8   A0A2A4JQ39   H9JLX6   A0A2H8TMM4   X2D4J3   A0A146MEM0   A0A146LQK9   A0A2S2PQU7   A0A1Y1MI14   A0A1Y1ML21   J9KES3   A0A1Y1MIE3   A0A2S2PMX6   A0A2S2QZ54   A0A069DWH7   T1HU77   D6WED3   B6CY69   N6U4N6   A0A1B6DBA5   A0A1B6CRS2   A0A2J7Q3G4   A0A3Q0IT57   A0A1B6LCC7   W8AYE8   B4KZ22   A0A1B6F5R4   A0A0Q9XPD1   A0A1B6GDB9   A0A0M3QWZ4   A0A0A1WZX2   A0A0K8UXH4   A0A0R1E314   A0A1W4W4W9   A0A0Q5UJS4   A0A0K8UVD8   Q9VVG3   Q8IQQ6   A0A0P8YGX5   B4J247   C7LAC7   A0A1W4W4B2   B4PJW1   A0A0J9UN26   B3NHW0   B3M6C3   B4QNU2   B4HKR7   Q8IQQ7   C7LA83   A0A0J9RYC3   Q9U975   A0A3B0KG05   A0A1A9VYS9   B5DQ44   B4MMQ9   A0A034VAZ8   A0A1L8DJV5   A0A1L8DJV8   A0A1A9Y1H6   A0A1B0C1B4   A0A1B0FAG9   A0A1I8MQX4   B4H6L6   A0A1B0C4T3   A0A1A9WEB0   A0A1I8PP83   A0A1Q3EXX7   A0A310SK53   B0WT87   A0A336MYS6   A0A1S4FRX2   A0A1I8PP26   A0A182G8F8   W5JQB4   A0A1Q3EXK4   A0A182FEN9   Q16RP7   A0A1Q3EXK9   A0A1Q3EXU0   A0A182T2I6   A0A2M4BEJ5   A0A182THX6   A0A2M4BDW0   A0A1B0EY28   A0A2M3YYZ3  

Pubmed

28756777    26354079    22118469    19121390    26823975    28004739    + More
26334808    18362917    19820115    18621706    23537049    24495485    17994087    18057021    25830018    17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    22936249    10433833    15632085    25348373    25315136    26483478    20920257    23761445    17510324   

EMBL

ODYU01011147    SOQ56711.1    NWSH01000575    PCG75557.1    PCG75556.1    KZ150203    + More
PZC72266.1    KQ459605    KPI92042.1    AGBW02013269    OWR43759.1    KQ460953    KPJ10306.1    KQ459603    KPI92908.1    KQ461194    KPJ06924.1    ODYU01003081    SOQ41391.1    NWSH01000927    PCG73520.1    BABH01005368    BABH01005369    BABH01005370    GFXV01003570    MBW15375.1    KC713794    AHH29252.1    GDHC01001187    JAQ17442.1    GDHC01009060    JAQ09569.1    GGMR01019223    MBY31842.1    GEZM01030681    JAV85429.1    GEZM01030680    JAV85430.1    ABLF02019274    ABLF02019277    ABLF02019278    ABLF02019280    ABLF02019281    ABLF02019283    GEZM01030679    JAV85431.1    GGMR01018115    MBY30734.1    GGMS01013823    MBY83026.1    GBGD01000837    JAC88052.1    ACPB03000713    KQ971318    EFA00393.2    EU597677    ACH86322.1    APGK01049566    APGK01049567    KB741156    KB632169    ENN73547.1    ERL89466.1    GEDC01014376    JAS22922.1    GEDC01021174    JAS16124.1    NEVH01019067    PNF23126.1    GEBQ01025115    GEBQ01018628    JAT14862.1    JAT21349.1    GAMC01020671    GAMC01020669    JAB85886.1    CH933809    EDW17819.1    GECZ01024254    JAS45515.1    KRG05778.1    KRG05779.1    GECZ01009466    JAS60303.1    CP012525    ALC44969.1    GBXI01012221    GBXI01009910    GBXI01003836    JAD02071.1    JAD04382.1    JAD10456.1    GDHF01021028    JAI31286.1    CM000159    KRK02018.1    CH954178    KQS44048.1    GDHF01022024    JAI30290.1    AE014296    BT033062    AAF49348.2    ACE82585.1    BT133104    AAN11709.1    AEX98024.1    AHN58118.1    CH902618    KPU78195.1    CH916366    EDV96998.1    BT099677    ACV44463.1    EDW94730.1    KRK02019.1    CM002912    KMZ00221.1    EDV51975.2    KQS44049.1    EDV39743.1    KPU78196.1    CM000363    EDX10844.1    CH480815    EDW41872.1    BT133440    AAN11707.1    AAN11708.1    AFH78572.1    BT099633    ACU64822.1    KMZ00220.1    KMZ00222.1    AJ243264    CAB53640.1    OUUW01000012    SPP87310.1    CH379069    EDY73688.2    CH963847    EDW73465.2    GAKP01020255    GAKP01020254    JAC38698.1    GFDF01007341    JAV06743.1    GFDF01007342    JAV06742.1    JXJN01023976    CCAG010006264    CH479214    EDW33444.1    JXJN01025645    GFDL01014880    JAV20165.1    KQ763581    OAD54951.1    DS232081    EDS34236.1    UFQS01002456    UFQT01002456    SSX14090.1    SSX33507.1    JXUM01047773    JXUM01047774    KQ561532    KXJ78248.1    ADMH02000413    ETN66607.1    GFDL01015025    JAV20020.1    CH477700    EAT37089.1    GFDL01015001    JAV20044.1    GFDL01014923    JAV20122.1    GGFJ01002097    MBW51238.1    GGFJ01002098    MBW51239.1    AJVK01033670    AJVK01033671    AJVK01033672    GGFM01000710    MBW21461.1   

Proteomes

UP000218220    UP000053268    UP000007151    UP000053240    UP000005204    UP000007819    + More
UP000015103    UP000007266    UP000019118    UP000030742    UP000235965    UP000079169    UP000009192    UP000092553    UP000002282    UP000192221    UP000008711    UP000000803    UP000007801    UP000001070    UP000000304    UP000001292    UP000268350    UP000078200    UP000001819    UP000007798    UP000092443    UP000092460    UP000092444    UP000095301    UP000008744    UP000091820    UP000095300    UP000002320    UP000069940    UP000249989    UP000000673    UP000069272    UP000008820    UP000075901    UP000075902    UP000092462   

PRIDE

H9JLX6    Q9VVG3    Q8IQQ6    Q8IQQ7    C7LA83    Q9U975    + More

Pfam

PF00209   SNF

Interpro

IPR000175   Na/ntran_symport        + More
IPR037272   SNS_sf       

SUPFAM

SSF161070   SSF161070       

ProteinModelPortal

A0A2H1WUH2   A0A2A4JU52   A0A2A4JUW4   A0A2W1BHG8   A0A194PFI0   A0A212EQK9   + More
A0A194R384   A0A194PIN1   A0A194QNJ1   A0A2H1VKR8   A0A2A4JQ39   H9JLX6   A0A2H8TMM4   X2D4J3   A0A146MEM0   A0A146LQK9   A0A2S2PQU7   A0A1Y1MI14   A0A1Y1ML21   J9KES3   A0A1Y1MIE3   A0A2S2PMX6   A0A2S2QZ54   A0A069DWH7   T1HU77   D6WED3   B6CY69   N6U4N6   A0A1B6DBA5   A0A1B6CRS2   A0A2J7Q3G4   A0A3Q0IT57   A0A1B6LCC7   W8AYE8   B4KZ22   A0A1B6F5R4   A0A0Q9XPD1   A0A1B6GDB9   A0A0M3QWZ4   A0A0A1WZX2   A0A0K8UXH4   A0A0R1E314   A0A1W4W4W9   A0A0Q5UJS4   A0A0K8UVD8   Q9VVG3   Q8IQQ6   A0A0P8YGX5   B4J247   C7LAC7   A0A1W4W4B2   B4PJW1   A0A0J9UN26   B3NHW0   B3M6C3   B4QNU2   B4HKR7   Q8IQQ7   C7LA83   A0A0J9RYC3   Q9U975   A0A3B0KG05   A0A1A9VYS9   B5DQ44   B4MMQ9   A0A034VAZ8   A0A1L8DJV5   A0A1L8DJV8   A0A1A9Y1H6   A0A1B0C1B4   A0A1B0FAG9   A0A1I8MQX4   B4H6L6   A0A1B0C4T3   A0A1A9WEB0   A0A1I8PP83   A0A1Q3EXX7   A0A310SK53   B0WT87   A0A336MYS6   A0A1S4FRX2   A0A1I8PP26   A0A182G8F8   W5JQB4   A0A1Q3EXK4   A0A182FEN9   Q16RP7   A0A1Q3EXK9   A0A1Q3EXU0   A0A182T2I6   A0A2M4BEJ5   A0A182THX6   A0A2M4BDW0   A0A1B0EY28   A0A2M3YYZ3  

PDB

4XPH     E-value=1.56033e-06,     Score=126

KEGG

101736736    K05336 solute carrier family 6 (neurotransmitter transporter), invertebrate | (RefSeq) sodium-depend

GO

GO:0016021   GO:0005328   GO:0043005   GO:0005886   GO:0005332   GO:0042165   GO:0015293   GO:0006836   GO:0005089   GO:0035023   GO:0005515   GO:0019752   GO:0030246   GO:0007169  

PANTHER

PTHR11616  

Length:

637

Number of predicted TMHs:

12

Exp number of AAs in TMHs:

267.01281

Exp number, first 60 AAs:

35.90045

Total prob of N-in:

0.88442

POSSIBLE N-term signal

sequence

inside

1  -  12

TMhelix

13  -  32

outside

33  -  46

TMhelix

47  -  69

inside

70  -  89

TMhelix

90  -  112

outside

113  -  162

TMhelix

163  -  185

inside

186  -  191

TMhelix

192  -  211

outside

212  -  233

TMhelix

234  -  256

inside

257  -  268

TMhelix

269  -  291

outside

292  -  321

TMhelix

322  -  344

inside

345  -  356

TMhelix

357  -  376

outside

377  -  390

TMhelix

391  -  413

inside

414  -  425

TMhelix

426  -  448

outside

449  -  462

TMhelix

463  -  485

inside

486  -  637

 

 

Pi

15.558396

Theta

17.547306

Tajima's D

-1.219275

CLR

0.095821

CSRT

0.0990450477476126

Interpretation

Uncertain