SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO00547
Annotation
reverse_transcriptase_[Danaus_plexippus]
Location in the cell
Mitochondrial   Reliability : 1.157 Nuclear   Reliability : 1.764
 

Sequence

CDS
ATGCTAGGCCATGTCCCCGGCGGTTCTCTGGCTGTTAAAGGGGAAGGCCCTCCAGAGGGGGGTACCGGAGGGTACCACCTTAGGTGGAGAATCCCTCCGTGCTTTCACCTCGGTGGGAGCACGCTGCCCCGCGTATTCTGGGGGGGCAAAGAATGCCATGATGAAGGGGGCTGTGCGACGGGCAGCGGAAAACCCGTCGAACCGAGGTGTGCCAGCGCTGGCTCGACGCGTTCTGCGCTCGTCAGCGACGGCGAAACAGTTGATCCGAAAGGGACAGCCGCCAAGAAGATCAGGCGGAAGAGGAAATCCTGGCGAGTTTCCTCTCGTGAGGGGGTAGGGGAGCCAGCATCGTCCTCTGGTGCGGATGCCCCGCCGGAGAAAGTGCTGGTAGTCTCCGATGCGGCATCTGCTGCAGAGGAGATGCCGCCCCCTAAAGGAAGACCCGCCCGTAGAAGGGGCGCGCCGTCACCGGCGCCATCATCAGTGTCGATGTCTGTCGCCTCACTGGACGGGCAGACGACGGAGGAGGAAGAGGGTGGCCTTCAGGACCCTGCCTTGGTCATAGACAGGGCCATGAAGACCATCAAAACCTATGCGGCCAACGGCACCAAGACCAAAGCCGCTGGCCGTAAACTGCGAGAAGTGGTCTCGCAAGTCTCGAAGGTTCTGCCTTCGGTTGCTTCTGCCAATGACCAGGTAGTGCAGCTGAGGGCGGAGAATTCGAGGCTTCGAGCACAGCTTCAAGCACAGCAGCAGCCCAATGATGGCGCAGCGACGCCTTGGGTCGCTGGAGCCCCTCGAGGTCCCCGTCCCCCGGCGCTGACTGGCGACCGATGGCCTGTGCTGCCGCCACCGCGTGTGGCACAGCAGAGGCCGCGTCTCCCGTCGCCGCGCTCTAGGGAGACGACCGCTGCCGAGCGACAGCAAGCACTCGCGGGGCCACGGATGTTGGCTCCGCTACAACCAACAAACTTCAGCCTGGAAGAGGTCATCAGCCGCACCATCCAGGCTGTAATAGAAAGGCTGGGCGGCAGGTTGGCGGCTCTCGAGGCGAAAGTCCCTACCTCGGCTGACGCTAGGCGGCCGGCGGTGTCGGGTGCTTTGGCCGCTCGTCCTGCTCCCGTACGGGCTCCAGTCACCAGGTCGGGCCCGGGACGGGATAGAACCAAGCGAGGGGGTCGCGCTAACGCGAAGCCCTCACTACAAGCACCCCAGTCCCGCCCGCTGCCTCCGCCCCCGTCAGATATGGATGAGGGGTGGAACGTGGTGGCCCGGCGGGGTACCAAAAAGGCCCCACCGGCAGCTCCTCAAACGAGTAGAGCGCCGGTGGCCATGGTGGCTCAGGGTGCACCCCAACAGGGTCGAGCGCCTGTAGCCGCCAAGAAAAACAAGAAGAAAAAGAAGTTGCCGCGCGCGCCTCGGTCGGCGGCAGTGGTTCTTACCCTACTGCCAGCCGCTGAAGCCAAGGGCATGACATACAGAGATGTCATTGCCCGGGCGCGTGCGGCAGTTGACCTGGGCGAGATCGGGGCGGAGGAGGAGGGCCTCCGCTGCAGGCAGACGGCCAACGGGGCCAAGCTGCTAGAATGTCCCGGTGCCGATAGTTCCGGCATCGCGGAGCGTCTGGCGGCGAAGCTCCGTAAGGTCCTGCCTGAGGAGGAGGTACGGGTGCACAGGCCGGTAAAAATGGCCGAATTAAGAGTAACCGGCCTGGACGACTGCACCACCAGGGATGAGGTGACGGCGGCCGTCGCTGCCCAGGGCAAATGCGCACTGGAAAATGTTACAGTAGGCGAGCCGCGCCGCGGTTATACCGGGGCCAGCTCGGTATGGGTGCGTTGCCCGGTGGAAGCGGCCGCCTCCCTGGCTGCTCCTCCTCCCGGGAGACCTTCGGGAAATCCGGGCATGCTGCGCGTGGGCTGGATAGCGGCCCACGTGCACTTGCTTGAACCACGCGCCTGGCGATGCCTCCGGTGCTTTAGCACCGGACACGGCCTCGCCAGGTGCACCAGCTCGGTTGACCGCAGTGGTCTGTGTTTCCGCTGCGGCCAGCCGGGACATAAAGCGGCGTCCTGCACGGCTGCCCCGCATTGCGCTCTGTGTGCTGCGGCCGGGCGCAGGGCAAGCCACCGAACGGGAGGCAAGGCGTGCTTTTCGTCCGGTAATAATACCGAACGCAACCGGCGCCGCAAGTCAAAGCGTCGGCAAAACAGAAGGTTGGCCAGAGGAGCACTGGCCAACGCTGTAATCCCCGCTGCGGTGCCGGTGCCGGAGGGCGGGGCAGTGGACATGCTGTCTCAGAGCATGGCGGAGTGGTCCATAGATGTGGCTGTGGTCGCCGAGCCGTACTTCGTTCCCCCGGCAAATGATTGCTGGTTTGGGGACGATGGCGGCCTGGCGGCCATAGTCATAAGAAGAGACGCGGCGATCCCCCCCCTGGCGATGGCCTACTGTCGAGTTCGGGCATTTCCTGGGCGGGATCGGGGCGATTGCTCGCCGCCTCGCTCCCCGTCCAGTGATTCTCGCGGGGGACCTCAATGCGAAGTCTGTCGCATGGGGTTCCCCCGCTCGGACGCTCGTGGTAGGCTGCTGGAGAGGTGGGCGAACGTGGCCGGCCTCTGTTTGTTGAATAGAGGTTCGGTTGCGACGTGCGTGCGGTGGCAGGGCGAGTCTATTGTGGACGTTACGTTCGCAAGCCCGGCCATCGCGCGCCGTATCCGCGACTGGAGGGTCTTGGAGGGGGCGGAGACACTGTCAGATCACCGATATATTCGGTTTGATCTCTCCGCCCGCTCCGCAGTCGCGGACGTCCACAGGGACCACCCCCATGGTGCGTCCCGGTCATTCCCCAAGTGGGCACTGAAGCGCCTGAATAAGGAGCTCCTGATGGAAGCCTCTATGGTGGCGGCGTGGGCGCCCATGCGTCCACACCCGGTCGAGGTCGAGGGCGAGGCAGGGTGGTTCCGGGACACGATGTGTCGCATTTGTGATGCGTCGATGCCCCGGATTGGCCCTCGACTTCCTAATCGCCAAGCGTACTGGTGGTCGCCCGAAATTGCGCAACTCCGCGTGGAGTGCGTTCGGGCGAGGCGCGAGTGCGCCAGGCATCGCCGCCGCCGCCTGCCGCGACGCAATGATCCGGTTGCATTCGCGGCGGAAGAGGTCCGGCTGCACGGCGCATTTCGCGTCGCGCAGAGGGCATTGCAGCTGGCCATCAGAAGAGCCAAGAACCAACACATGGAGGGTCTCTTGGAGACGCTGGATGAGGATCCGTGGGGGCGGCCCTATCATATGGTGCGCAATAAAATGCGCCCATGGGCCCCCCCGATCACGGAGCGTCTCCAGCCTCAGCAGCTGCGGGACATCGTCTCGGCGCTGTTCCCGCAGGAGCGGGATGGATTTATCGCTCCCGCTATGGACACGCCGCCGGAATACGACGGTGAAGTCCCTGCTGAGGTGCCCCATATAACGGGGGCGGAGCTCCGTGTGGCCGTACGCAAAATGTGCGCGAAGGACACTGCACCCGGCCCGGACGGCGTCCATGGTCGGGTTTGGGGCTTGGCTCTTGGTGCCCTGGGGGACCGACTCTTGAGGCTTTACAACTCCTGCCTCGAGTCGGGACGGTTTCCTTCATCGTGGAGGACGGGCAGACTCGTGCTGTTGAGAAAGGAGGGGCGCCCGGCGGATACCGCCGCCGGGTACCGTCCCATCGTGTTGCTGGATGAGGTGGGCAAGCTGCTGGAACGTATTCTGGCAGCCCGCATCATCCAGCATCTGGCCGGGGTGGGACCCGATCTGTCGGCGGAACAGTATGGCTTCCGAGAGGGCCGCTCAACCGTAGACGCGATCCTTCGCGTGCGGGCCCTCTCGGAGGAGGCCGTCTCCAGGGGCGGGGTGGCCCTGGCGGTATCACTCGATATCGCCAATGCGTTCAACACCCTGCCCTGGTCCGTGATAGGGGGGGCGCTGGAAAGACACGGAGTGCCCCCCTACCTTCGCCGGCTGGTGGGTTCCTACTTAGAGGACAGATCGGTCACGTGTACTGGACATGATGGGATCGTGCACCGATTCCCGGTCGTGCGCGGTGTTCCACAGGGGTCGGTGCTCGGCCCTCTTCTGTGGAATATCGGGTATGACTGGGTGCTAAGAGGTGCCCTCCTCCCGGGCCTGAGTGTAATCTGCTACGCAGACGACACGTTGGTCGTGGCCCGGGGGGGAGTTTTGCTGAGTCTGCCCGTCTTGCTACCGTTGGGGCCCCGGAGAGTGCCACCTATCGATGCTCAAATCGTGGTTGGAGGCGTCCGTATTGGGGTCGGGGTGCAGTTGAAGTACCTCGGCCTCATTCTAGACAGTCGTTGGACCTTCCGTGCTCACTTTCAGAATCTGGTCCCTCGTTTGTTGGGGGTGGCCGGCGCGTTAAGCCGGCTTCTGCCCAACGTCGGGGGGCCTGACCAGGTGACGCGCCGTCTCTATACAGGGGTGGTGCGGTCAATGGCCCTATACGGGGCGCCCGTGTGGGGCCAGTCCCTGGCCGTGGGGGTAGCAAAGTTGCTGCAACGGCCGCAACGCACCATCGCGGTCAGGGTCATCCGCGGCTATCGCACCATCTCCTTCGAGGCGGCGTGTGTACTGGCTGGGACGCCGCCTTGGGTTCTGGAAGCGGAGGCGCTCGCCGCTGACTATCAGTGGCGGGCTGACTTTCGTGCCCGGGGCGTGGCGCGCCCCAGCCCCAGTGTGGTCAGAGCGCGGAGGGCCCAATCTCGGCGGTCCGTGCTGGAATCATGGTCCAGGCGGCTGGCCGATCCTTCGGCTGGTCGTAGGACCGTCGAGGCGATTCGCCCAGTCCTTGTGGACTGGGCGAATCGTGACAGAGGACGCCTCACTTTCCGGCTCACGCAGGTGCTCACTGGGCATGGTTGCTTCGGTGAGTTCCTGCACCGGATCAGAGCCGAGCCGACGGCAGAGTGCCACCATTGTGGTTGCGACTTGGACACGGCAGAGCACACGCTCGTTGCCTGCCCCGCATGGGAGGGGTGGCGCCGTGTCCTCGTCGCAAAAATAGGAAACGACTTGTCGTTGCCGAGTGTTGTGGCATCGATGCTCGGCGACGACGAGTCGTGGAAGGCGATGCTCGACTTCTGCGAGTGCACCATCTCGCAGAAGGAGGCGGCGGGGCGCGTGAGAGACGCGCAAGCCCGCCGCCGTCGAGCGGGGGCCAGGGAGGCGGATATCGCCCAAGCCCTGGCCCTCTAA
Protein
MLGHVPGGSLAVKGEGPPEGGTGGYHLRWRIPPCFHLGGSTLPRVFWGGKECHDEGGCATGSGKPVEPRCASAGSTRSALVSDGETVDPKGTAAKKIRRKRKSWRVSSREGVGEPASSSGADAPPEKVLVVSDAASAAEEMPPPKGRPARRRGAPSPAPSSVSMSVASLDGQTTEEEEGGLQDPALVIDRAMKTIKTYAANGTKTKAAGRKLREVVSQVSKVLPSVASANDQVVQLRAENSRLRAQLQAQQQPNDGAATPWVAGAPRGPRPPALTGDRWPVLPPPRVAQQRPRLPSPRSRETTAAERQQALAGPRMLAPLQPTNFSLEEVISRTIQAVIERLGGRLAALEAKVPTSADARRPAVSGALAARPAPVRAPVTRSGPGRDRTKRGGRANAKPSLQAPQSRPLPPPPSDMDEGWNVVARRGTKKAPPAAPQTSRAPVAMVAQGAPQQGRAPVAAKKNKKKKKLPRAPRSAAVVLTLLPAAEAKGMTYRDVIARARAAVDLGEIGAEEEGLRCRQTANGAKLLECPGADSSGIAERLAAKLRKVLPEEEVRVHRPVKMAELRVTGLDDCTTRDEVTAAVAAQGKCALENVTVGEPRRGYTGASSVWVRCPVEAAASLAAPPPGRPSGNPGMLRVGWIAAHVHLLEPRAWRCLRCFSTGHGLARCTSSVDRSGLCFRCGQPGHKAASCTAAPHCALCAAAGRRASHRTGGKACFSSGNNTERNRRRKSKRRQNRRLARGALANAVIPAAVPVPEGGAVDMLSQSMAEWSIDVAVVAEPYFVPPANDCWFGDDGGLAAIVIRRDAAIPPLAMAYCRVRAFPGRDRGDCSPPRSPSSDSRGGPQCEVCRMGFPRSDARGRLLERWANVAGLCLLNRGSVATCVRWQGESIVDVTFASPAIARRIRDWRVLEGAETLSDHRYIRFDLSARSAVADVHRDHPHGASRSFPKWALKRLNKELLMEASMVAAWAPMRPHPVEVEGEAGWFRDTMCRICDASMPRIGPRLPNRQAYWWSPEIAQLRVECVRARRECARHRRRRLPRRNDPVAFAAEEVRLHGAFRVAQRALQLAIRRAKNQHMEGLLETLDEDPWGRPYHMVRNKMRPWAPPITERLQPQQLRDIVSALFPQERDGFIAPAMDTPPEYDGEVPAEVPHITGAELRVAVRKMCAKDTAPGPDGVHGRVWGLALGALGDRLLRLYNSCLESGRFPSSWRTGRLVLLRKEGRPADTAAGYRPIVLLDEVGKLLERILAARIIQHLAGVGPDLSAEQYGFREGRSTVDAILRVRALSEEAVSRGGVALAVSLDIANAFNTLPWSVIGGALERHGVPPYLRRLVGSYLEDRSVTCTGHDGIVHRFPVVRGVPQGSVLGPLLWNIGYDWVLRGALLPGLSVICYADDTLVVARGGVLLSLPVLLPLGPRRVPPIDAQIVVGGVRIGVGVQLKYLGLILDSRWTFRAHFQNLVPRLLGVAGALSRLLPNVGGPDQVTRRLYTGVVRSMALYGAPVWGQSLAVGVAKLLQRPQRTIAVRVIRGYRTISFEAACVLAGTPPWVLEAEALAADYQWRADFRARGVARPSPSVVRARRAQSRRSVLESWSRRLADPSAGRRTVEAIRPVLVDWANRDRGRLTFRLTQVLTGHGCFGEFLHRIRAEPTAECHHCGCDLDTAEHTLVACPAWEGWRRVLVAKIGNDLSLPSVVASMLGDDESWKAMLDFCECTISQKEAAGRVRDAQARRRRAGAREADIAQALAL

Summary

Pfam
PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
Interpro
IPR000477   RT_dom        + More
IPR001878   Znf_CCHC       
IPR036875   Znf_CCHC_sf       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
SUPFAM
SSF57756   SSF57756        + More
SSF56219   SSF56219       
Gene 3D
PDB
6AR3     E-value=3.6829e-05,     Score=119

Ontologies

Topology

Length:
1750
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.18386
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00001
outside
1  -  1750
 
 

Population Genetic Test Statistics

Pi
0
Theta
0
Tajima's D
0
CLR
0
CSRT
0
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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