Gene

KWMTBOMO00544

Pre Gene Modal

BGIBMGA012335

Annotation

Transmembrane_protein_C2orf18-like_[Papilio_xuthus]

Location

Bomo_Chr1(+):16089960-16101811      View in EpiBrowser

Full name

Solute carrier family 35 member F6      

Location in the cell

PlasmaMembrane   Reliability : 4.921

CDS

ATGGCCTGGACAAACTACCAGAAGTTCCTCGCCCTGATGATGTTGGTGACTGGCTCAATCAACTCTTTGAGTACAAAATGGGCTGATATATTAAAATCAAAGGGGTCAGACGGTGAAGAAAGATATTTCAACCATCCATTCTTGCAGACCTTATCTATGTTTTTGGGTGAAATGCTATGTTTACTTGTGTTCAAATTGGTGTATTACAAAACACGGAACACTGGGGGACATTCATTAACAGCTGGAACACAAAACTTCAATCCCTTAATTCTGATGCCCGCAGCTATGTTGGATTTGATTGGAACATCCATAATGTATATTGGTTTGACTCTAACCTACATCAGCAGTTTCCAAATGTTCCGTGGGTCTATCATTGTCTTTGTGGCTGTGCTGTCCATGACATTCTCCAACAAACAGATCATCAAAAGAGAATGGCTCGGGATTGTGTGCGTCATCATCGGACTTTTGATCGTGGGAGTTACGGACGCTTTGTACCAAACACCGGGAGAGTCTAAAGGCCGCAACAGCCTTATAACCGGCGACCTACTGATTATAATCGCTCAGGTTGTATCCGCCTGTCAGATGGTGTACGAAGAGAGATACGTTACAGGTCAAAATATCCCTCCATTGCAAGCTGTAGGCTGGGAAGGGGTGTTCGGTTTCTCTGTGCTGTCCGGTCTGTTGGTCGTGTTCTACTGGACTCCGGCCCCGCCCCACTTCGACAACAACCCGAGGGGAACCATAGAAGACGCTATCGATGGCCTGATACAAATCGCCAACAATCCATTGATCCTCGTGGCAACGCTTGGTACGATTGTATCGATAGCTTTCTTCAATTTCGCCGGCATCAGCGTTACCAAGGAAATGTCTGCTACAACCAGAATGGTGCTCGACTCAGTGAGGTAA

Protein

MAWTNYQKFLALMMLVTGSINSLSTKWADILKSKGSDGEERYFNHPFLQTLSMFLGEMLCLLVFKLVYYKTRNTGGHSLTAGTQNFNPLILMPAAMLDLIGTSIMYIGLTLTYISSFQMFRGSIIVFVAVLSMTFSNKQIIKREWLGIVCVIIGLLIVGVTDALYQTPGESKGRNSLITGDLLIIIAQVVSACQMVYEERYVTGQNIPPLQAVGWEGVFGFSVLSGLLVVFYWTPAPPHFDNNPRGTIEDAIDGLIQIANNPLILVATLGTIVSIAFFNFAGISVTKEMSATTRMVLDSVR

Description

May play a role as a nucleotide-sugar transporter.

Subunit

Interacts with SLC25A5.

Similarity

Belongs to the SLC35F solute transporter family.

Feature

chain  Solute carrier family 35 member F6

Uniprot

H9JS25   A0A2A4K439   A0A194QF62   A0A194QQD8   S4PT99   A0A212EKF5   + More
A0A1B0DGQ6   A0A1B0CL98   A0A1L8DUU7   A0A023EPY1   A0A182GVT6   U5EUX3   Q17PC1   A0A1Q3FE67   D2A5T4   A0A1B6DHG4   B0WIW3   A0A1B6BZD9   A0A1B6KB83   A0A336M3N3   A0A0A9Y3L5   A0A1Y1LHV7   A0A1Z5KV46   A0A0P5KGZ1   A0A0P5KC74   A0A1J1HL08   A0A0P5FS89   A0A1D2NDJ6   A0A0N8AP30   Q7QAT4   A0A182IN62   A0A182S8S1   W5JX72   A0A2M4BRF9   L7M0A8   A0A2M3Z8F0   A0A023F9P5   A0A2M4AEG5   A0A0V0GCH5   A0A131YNK3   J3JUR2   A0A224XEJ2   V5I8K5   A0A224Z270   A0A1B6GK29   A0A1B6HVL9   A0A023FNA8   A0A2J7RA08   A0A293LZQ0   A0A023GP72   A0A131XCH7   A0A182MCM4   N6TRG2   A0A154PIS7   E9GF53   R4G451   A0A131XSN5   B7QC12   A0A0K8RJE4   A0A182Y7F8   A0A182KBX5   A0A182RZE3   A0A182F716   A0A2S2QH57   A0A2H8TMK8   J9JYA6   A0A1S3ITM5   A0A232ES29   F4W5V5   A0A2C9H8L8   A0A182UAV4   A0A1Y9GKQ6   A0A195EZM8   A0A158P2T8   K1R6G5   A0A2L2YA49   A0A182VS07   A0A151XHY1   A0A2A3EC14   A0A195C2A0   A0A026VXV3   A0A226EJI3   A0A147BA80   V5H2Q0   A0A3P8YBX1   A0A2S2PE48   A0A3B4C899   A0A087TXZ5   A0A060WCK3   A0A0P5IPC7   Q4RQY3   E2BZ82   H3DG54   A0A195BN35   G3UE46   H2V849   A0A060XMK4   A0A1S3M8Y8   A0A2Y9DNF8   H0W8X6  

Pubmed

19121390    26354079    23622113    22118469    24945155    26483478    + More
17510324    18362917    19820115    25401762    26823975    28004739    28528879    27289101    12364791    14747013    17210077    20920257    23761445    25576852    25474469    26830274    22516182    28797301    28049606    23537049    21292972    25244985    28648823    21719571    21347285    22992520    26561354    24508170    30249741    25765539    25069045    24755649    15496914    20798317    21551351    21993624   

EMBL

BABH01017106    BABH01017107    NWSH01000183    PCG78664.1    KQ459053    KPJ04183.1    + More
KQ461181    KPJ07723.1    GAIX01012408    JAA80152.1    AGBW02014274    OWR41967.1    AJVK01060219    AJWK01017054    GFDF01003876    JAV10208.1    GAPW01001996    JAC11602.1    JXUM01002520    JXUM01002521    JXUM01002522    JXUM01002523    KQ560140    KXJ84216.1    GANO01002137    JAB57734.1    CH477193    EAT48510.1    GFDL01009184    JAV25861.1    KQ971345    EFA05027.1    GEDC01012175    JAS25123.1    DS231953    EDS28789.1    GEDC01030919    GEDC01028492    GEDC01021416    GEDC01021345    JAS06379.1    JAS08806.1    JAS15882.1    JAS15953.1    GEBQ01031277    GEBQ01027189    GEBQ01013425    GEBQ01004196    JAT08700.1    JAT12788.1    JAT26552.1    JAT35781.1    UFQT01000513    UFQT01000608    SSX24872.1    SSX25674.1    GBHO01015992    GDHC01011624    GDHC01003487    JAG27612.1    JAQ07005.1    JAQ15142.1    GEZM01057098    JAV72448.1    GFJQ02008013    JAV98956.1    GDIQ01209909    JAK41816.1    GDIP01172595    GDIQ01191668    LRGB01000248    JAJ50807.1    JAK60057.1    KZS20071.1    CVRI01000002    CRK86921.1    GDIQ01256820    JAJ94904.1    LJIJ01000077    ODN03330.1    GDIQ01256819    JAJ94905.1    AAAB01008888    EAA08806.3    ADMH02000081    ETN67874.1    GGFJ01006370    MBW55511.1    GACK01007273    JAA57761.1    GGFM01004058    MBW24809.1    GBBI01001069    JAC17643.1    GGFK01005853    MBW39174.1    GECL01000560    JAP05564.1    GEDV01008020    JAP80537.1    BT126977    AEE61939.1    GFTR01005539    JAW10887.1    GALX01004525    JAB63941.1    GFPF01012810    MAA23956.1    GECZ01031125    GECZ01006965    JAS38644.1    JAS62804.1    GECU01028959    GECU01027568    GECU01019078    GECU01017327    JAS78747.1    JAS80138.1    JAS88628.1    JAS90379.1    GBBK01001738    JAC22744.1    NEVH01006580    PNF37656.1    GFWV01008582    MAA33311.1    GBBM01000145    JAC35273.1    GEFH01003217    JAP65364.1    AXCM01001479    APGK01054667    KB741251    ENN71855.1    KQ434931    KZC11786.1    GL732541    EFX81958.1    ACPB03005214    GAHY01001650    JAA75860.1    GEFM01006581    JAP69215.1    ABJB010344060    ABJB010388403    DS903990    EEC16384.1    GADI01002598    JAA71210.1    GGMS01007865    MBY77068.1    GFXV01003415    MBW15220.1    ABLF02016845    NNAY01002506    OXU21170.1    GL887695    EGI70431.1    APCN01005504    KQ981905    KYN33367.1    ADTU01007478    JH816368    EKC41408.1    IAAA01012703    LAA05049.1    KQ982116    KYQ59921.1    KZ288308    PBC28739.1    KQ978344    KYM94989.1    KK107597    QOIP01000013    EZA48608.1    RLU15171.1    LNIX01000003    OXA56921.1    GEIB01000111    JAR87653.1    GANP01007203    JAB77265.1    GGMR01014577    MBY27196.1    KK117264    KFM69984.1    FR904422    CDQ62969.1    GDIQ01210564    JAK41161.1    CAAE01015003    CAG09199.1    GL451577    EFN78988.1    KQ976432    KYM87440.1    FR905292    CDQ78125.1    AAKN02023453   

Proteomes

UP000005204    UP000218220    UP000053268    UP000053240    UP000007151    UP000092462    + More
UP000092461    UP000069940    UP000249989    UP000008820    UP000007266    UP000002320    UP000076858    UP000183832    UP000094527    UP000007062    UP000075880    UP000075901    UP000000673    UP000235965    UP000075883    UP000019118    UP000076502    UP000000305    UP000015103    UP000001555    UP000076408    UP000075881    UP000075900    UP000069272    UP000007819    UP000085678    UP000215335    UP000007755    UP000076407    UP000075902    UP000075840    UP000078541    UP000005205    UP000005408    UP000075920    UP000075809    UP000242457    UP000078542    UP000053097    UP000279307    UP000198287    UP000265140    UP000261440    UP000054359    UP000193380    UP000008237    UP000007303    UP000078540    UP000007646    UP000005226    UP000087266    UP000248480    UP000005447   

PRIDE

H9JS25   

Pfam

PF06027   SLC35F        + More
PF04142   Nuc_sug_transp
PF08627   CRT-like
PF00892   EamA
PF14500   MMS19_N
PF12460   MMS19_C

Interpro

IPR009262   SLC35_F1/F2/F6        + More
IPR012404   UCP036436       
IPR007271   Nuc_sug_transpt       
IPR013936   CRT-like       
IPR000620   EamA_dom       
IPR019734   TPR_repeat       
IPR011990   TPR-like_helical_dom_sf       
IPR013026   TPR-contain_dom       
IPR011989   ARM-like       
IPR029240   MMS19_N       
IPR039920   MET18/MMS19       
IPR024687   MMS19_C       
IPR016024   ARM-type_fold       

SUPFAM

SSF48452   SSF48452        + More
SSF48371   SSF48371       

Gene 3D

1.25.40.10     1.25.10.10    

ProteinModelPortal

H9JS25   A0A2A4K439   A0A194QF62   A0A194QQD8   S4PT99   A0A212EKF5   + More
A0A1B0DGQ6   A0A1B0CL98   A0A1L8DUU7   A0A023EPY1   A0A182GVT6   U5EUX3   Q17PC1   A0A1Q3FE67   D2A5T4   A0A1B6DHG4   B0WIW3   A0A1B6BZD9   A0A1B6KB83   A0A336M3N3   A0A0A9Y3L5   A0A1Y1LHV7   A0A1Z5KV46   A0A0P5KGZ1   A0A0P5KC74   A0A1J1HL08   A0A0P5FS89   A0A1D2NDJ6   A0A0N8AP30   Q7QAT4   A0A182IN62   A0A182S8S1   W5JX72   A0A2M4BRF9   L7M0A8   A0A2M3Z8F0   A0A023F9P5   A0A2M4AEG5   A0A0V0GCH5   A0A131YNK3   J3JUR2   A0A224XEJ2   V5I8K5   A0A224Z270   A0A1B6GK29   A0A1B6HVL9   A0A023FNA8   A0A2J7RA08   A0A293LZQ0   A0A023GP72   A0A131XCH7   A0A182MCM4   N6TRG2   A0A154PIS7   E9GF53   R4G451   A0A131XSN5   B7QC12   A0A0K8RJE4   A0A182Y7F8   A0A182KBX5   A0A182RZE3   A0A182F716   A0A2S2QH57   A0A2H8TMK8   J9JYA6   A0A1S3ITM5   A0A232ES29   F4W5V5   A0A2C9H8L8   A0A182UAV4   A0A1Y9GKQ6   A0A195EZM8   A0A158P2T8   K1R6G5   A0A2L2YA49   A0A182VS07   A0A151XHY1   A0A2A3EC14   A0A195C2A0   A0A026VXV3   A0A226EJI3   A0A147BA80   V5H2Q0   A0A3P8YBX1   A0A2S2PE48   A0A3B4C899   A0A087TXZ5   A0A060WCK3   A0A0P5IPC7   Q4RQY3   E2BZ82   H3DG54   A0A195BN35   G3UE46   H2V849   A0A060XMK4   A0A1S3M8Y8   A0A2Y9DNF8   H0W8X6  

KEGG

101735848    no KO assigned | (RefSeq) solute carrier family 35 member F6

GO

GO:0022857   GO:0016021   GO:0000139   GO:0015165   GO:0097428   GO:0008284   GO:0005739   GO:1901029   GO:0005765   GO:0005829   GO:0005654   GO:0006810   GO:0004190   GO:0006508   GO:0015074   GO:0006013   GO:0015923   GO:0030246   GO:0007169   GO:0055085  

PANTHER

PTHR12891  

Subcellular location

Mitochondrion  

Length:

301

Number of predicted TMHs:

8

Exp number of AAs in TMHs:

169.46114

Exp number, first 60 AAs:

33.54596

Total prob of N-in:

0.85511

POSSIBLE N-term signal

sequence

inside

1  -  8

TMhelix

9  -  31

outside

32  -  45

TMhelix

46  -  68

inside

69  -  88

TMhelix

89  -  111

outside

112  -  116

TMhelix

117  -  136

inside

137  -  144

TMhelix

145  -  167

outside

168  -  176

TMhelix

177  -  199

inside

200  -  211

TMhelix

212  -  234

outside

235  -  262

TMhelix

263  -  285

inside

286  -  301

 

 

Pi

16.030391

Theta

15.501496

Tajima's D

-1.359487

CLR

0.106565

CSRT

0.0778461076946153

Interpretation

Uncertain