Gene

KWMTBOMO00542  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA012333

Annotation

PREDICTED:_phytanoyl-CoA_dioxygenase_domain-containing_protein_1_[Bombyx_mori]

Location

Bomo_Chr1(+):16045600-16061069      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.625 Nuclear   Reliability : 1.626

CDS

ATGCACGACTCAATAAAGAGCCAGTTGATTACGGACGGCTACGCGATCCTAGAAGATTTTCTTCATGTTGCGGAATGTGATGAAATCAAAGCCGCTGGATTGGAATTCACTGAAAACTTGCCAGACATAGAGGAGAGAGCAACGTTCTCGACAACAGAGAAAACACATTTAAAGGATAAATATTTCCTAGAAAGCAACGACAAGATAAGGTGTTTCTTCGAAGAGGGAGCCATCGACGCCGATGGAAATCTTACAGTCGAACCGGAGATTTCATTAAACAAGGTCGGTCACGCACTGCATCTCCTACATCCGATTTTCAGATGTTACACGTATAGTGAACGCGTGAAGAGCATTTGCAAAGAGCTTGGCTTTATCGAGCCGGCTGTGGTGCAAAGCATGTATATTTTTAAGAACCCTGGCATTGGTTCCGAAGTGGTTCCACATCAAGACGCAACATATCTGTACACAGAGCCAACTCCCCCAGTTGGCTTCTGGATAGCTCTTGAAGAAGCCACAGTTCAAAACGGCTGTCTGTGGCTGTCTCGAGGCTCTCACAGGTCAGGAGTGCACAGACGTTTGATCCGCAACCCAGATGAAGACAGTGACGAGGCTTTAATCTATGATAAACCTGCAGCGGTTTATCCACAATCTAGCTTTACACCCATACCGGTTTCGAAAGGAACGTGTATATTATTACACGGCAACGTTGTACATAAGAGCTCCCACAACAAATCTGATAAGAGTCGCCACGCCTACACTTTCCACGTGGTGGAGACATACAATAATTTGTACTCGACCGAAAATTGGTTGCAGGAAGGCGAAGACGCTCCCTTTTGTAACTTGTACAACACATTACAGATGATTTAA

Protein

MHDSIKSQLITDGYAILEDFLHVAECDEIKAAGLEFTENLPDIEERATFSTTEKTHLKDKYFLESNDKIRCFFEEGAIDADGNLTVEPEISLNKVGHALHLLHPIFRCYTYSERVKSICKELGFIEPAVVQSMYIFKNPGIGSEVVPHQDATYLYTEPTPPVGFWIALEEATVQNGCLWLSRGSHRSGVHRRLIRNPDEDSDEALIYDKPAAVYPQSSFTPIPVSKGTCILLHGNVVHKSSHNKSDKSRHAYTFHVVETYNNLYSTENWLQEGEDAPFCNLYNTLQMI

Uniprot

H9JS23   A0A0B6VHE3   A0A2A4JKP4   I4DLF0   A0A194QS93   A0A194PGQ3   + More
A0A0B6VIJ0   A0A212EKE9   A0A2H1V2R0   A0A2Z5ULY9   A0A2H1VG37   A0A2J7QTX7   A0A1B6GEC5   A0A067QJC2   A0A1B6IQ44   A0A023EMH8   Q17Q56   A0A1S4EUY1   Q17Q55   A0A182FL16   A0A088A5Q3   D6WGI8   A0A158NTQ7   A0A182HF21   W5J6Z6   A0A0J7L1L3   F4WJ01   Q7QAW1   A0A182VKF2   A0A182HZ45   A0A182WVZ4   A0A182KXA9   E2AIR3   A0A195FR23   B5DVF5   A0A0N0BD00   A0A195BP24   A0A182TIR7   A0A310S6Q9   A0A1L8DYY0   A0A182QXU4   A0A1Q3G4F6   A0A182NSJ7   A0A1B0BB94   A0A182VS42   A0A182P094   Q7QLE4   D3TPY0   A0A034WWF7   A0A0C9QDF8   A0A0K8UC17   A0A0L7QXZ9   A0A182M324   A0A195CV44   A0A084W1R7   A0A1A9Z8D7   A0A0L0CLL7   A0A232ETS2   A0A3B0K4P1   A0A182K2F6   A0A151X4Z5   A0A154PB32   A0A1A9UYY9   Q9VGY8   W8C8A5   B4LWF5   B4JIJ4   B4NF68   W8BQ75   B4PKQ9   B4K5K5   U5EY12   A0A1W4W0E2   B4HIS2   A0A1A9YFB5   A0A1B0CGX0   B3LVY0   B3P1M3   A0A1B0GEY0   A0A182JE58   B4G685   K7J4W9   A0A0C9PR10   A0A182YLL2   E2BBF5   A0A1L8DYU6   T1PI95   A0A026VYB4   A0A3L8D544   A0A182R898   A0A1J1J421   A0A2R7WS04   E0V9U6   B0X5I5   A0A1I8P4P4   A0A1Y1KXX9   J3JU81   T1HCC7   A0A224XLE9  

Pubmed

19121390    22651552    26354079    22118469    24845553    24945155    + More
17510324    18362917    19820115    21347285    26483478    20920257    23761445    21719571    12364791    14747013    17210077    20966253    20798317    15632085    17994087    9087549    20353571    25348373    24438588    26108605    28648823    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    24495485    17550304    20075255    25244985    25315136    24508170    30249741    20566863    28004739    22516182   

EMBL

BABH01017102    AB926418    AB926420    BAQ19531.1    BAQ19533.1    NWSH01001117    + More
PCG72531.1    AK402118    BAM18740.1    KQ461196    KPJ06411.1    KQ459605    KPI91884.1    AB926421    BAQ19534.1    AGBW02014274    OWR41969.1    ODYU01000405    SOQ35127.1    AP017491    BBB06757.1    ODYU01002396    SOQ39830.1    NEVH01011192    PNF32040.1    GECZ01008980    JAS60789.1    KK853424    KDR07687.1    GECU01018660    JAS89046.1    GAPW01003071    JAC10527.1    CH477187    EAT48861.1    EAT48860.1    KQ971321    EFA00565.1    ADTU01026110    JXUM01133286    KQ567959    KXJ69214.1    ADMH02002130    ETN58554.1    LBMM01001244    KMQ96657.1    GL888181    EGI65771.1    AAAB01008888    EAA08759.5    APCN01005482    GL439869    EFN66675.1    KQ981382    KYN42359.1    CM000070    EDY67741.2    KQ435891    KOX69391.1    KQ976435    KYM87109.1    KQ767283    OAD53424.1    GFDF01002403    JAV11681.1    AXCN02000234    GFDL01000350    JAV34695.1    JXJN01011342    JXJN01011343    AAAB01007485    EAA02969.4    EZ423482    ADD19758.1    GAKP01000819    JAC58133.1    GBYB01012473    GBYB01013172    JAG82240.1    JAG82939.1    GDHF01028130    JAI24184.1    KQ414699    KOC63419.1    AXCM01000846    KQ977279    KYN04039.1    ATLV01019415    KE525269    KFB44161.1    JRES01000228    KNC33190.1    NNAY01002235    OXU21755.1    OUUW01000013    SPP87672.1    KQ982526    KYQ55451.1    KQ434846    KZC08400.1    AE014297    AAF54534.3    GAMC01003129    JAC03427.1    CH940650    EDW66592.1    CH916369    EDV93075.1    CH964251    EDW82935.1    GAMC01003130    JAC03426.1    CM000160    EDW96818.1    CH933806    EDW14042.1    GANO01002247    JAB57624.1    CH480815    EDW42719.1    AJWK01011660    CH902617    EDV41513.1    CH954181    EDV49622.1    CCAG010012614    CCAG010012615    CCAG010012616    CCAG010012617    CCAG010012618    CCAG010012619    CH479179    EDW23842.1    GBYB01003678    JAG73445.1    GL447038    EFN86992.1    GFDF01002478    JAV11606.1    KA647643    AFP62272.1    KK107591    EZA48630.1    QOIP01000013    RLU15261.1    CVRI01000070    CRL07151.1    KK855392    PTY22342.1    DS234996    EEB10152.1    DS232381    EDS40870.1    GEZM01070921    GEZM01070920    GEZM01070916    GEZM01070915    JAV66224.1    BT126794    AEE61756.1    ACPB03008741    GFTR01004512    JAW11914.1   

Proteomes

UP000005204    UP000218220    UP000053240    UP000053268    UP000007151    UP000235965    + More
UP000027135    UP000008820    UP000069272    UP000005203    UP000007266    UP000005205    UP000069940    UP000249989    UP000000673    UP000036403    UP000007755    UP000007062    UP000075903    UP000075840    UP000076407    UP000075882    UP000000311    UP000078541    UP000001819    UP000053105    UP000078540    UP000075902    UP000075886    UP000075884    UP000092460    UP000075920    UP000075885    UP000053825    UP000075883    UP000078542    UP000030765    UP000092445    UP000037069    UP000215335    UP000268350    UP000075881    UP000075809    UP000076502    UP000078200    UP000000803    UP000008792    UP000001070    UP000007798    UP000002282    UP000009192    UP000192221    UP000001292    UP000092443    UP000092461    UP000007801    UP000008711    UP000092444    UP000075880    UP000008744    UP000002358    UP000076408    UP000008237    UP000095301    UP000053097    UP000279307    UP000075900    UP000183832    UP000009046    UP000002320    UP000095300    UP000015103   

PRIDE

H9JS23    Q9VGY8   

Pfam

PF05721   PhyH

Interpro

IPR008775   Phytyl_CoA_dOase       

ProteinModelPortal

H9JS23   A0A0B6VHE3   A0A2A4JKP4   I4DLF0   A0A194QS93   A0A194PGQ3   + More
A0A0B6VIJ0   A0A212EKE9   A0A2H1V2R0   A0A2Z5ULY9   A0A2H1VG37   A0A2J7QTX7   A0A1B6GEC5   A0A067QJC2   A0A1B6IQ44   A0A023EMH8   Q17Q56   A0A1S4EUY1   Q17Q55   A0A182FL16   A0A088A5Q3   D6WGI8   A0A158NTQ7   A0A182HF21   W5J6Z6   A0A0J7L1L3   F4WJ01   Q7QAW1   A0A182VKF2   A0A182HZ45   A0A182WVZ4   A0A182KXA9   E2AIR3   A0A195FR23   B5DVF5   A0A0N0BD00   A0A195BP24   A0A182TIR7   A0A310S6Q9   A0A1L8DYY0   A0A182QXU4   A0A1Q3G4F6   A0A182NSJ7   A0A1B0BB94   A0A182VS42   A0A182P094   Q7QLE4   D3TPY0   A0A034WWF7   A0A0C9QDF8   A0A0K8UC17   A0A0L7QXZ9   A0A182M324   A0A195CV44   A0A084W1R7   A0A1A9Z8D7   A0A0L0CLL7   A0A232ETS2   A0A3B0K4P1   A0A182K2F6   A0A151X4Z5   A0A154PB32   A0A1A9UYY9   Q9VGY8   W8C8A5   B4LWF5   B4JIJ4   B4NF68   W8BQ75   B4PKQ9   B4K5K5   U5EY12   A0A1W4W0E2   B4HIS2   A0A1A9YFB5   A0A1B0CGX0   B3LVY0   B3P1M3   A0A1B0GEY0   A0A182JE58   B4G685   K7J4W9   A0A0C9PR10   A0A182YLL2   E2BBF5   A0A1L8DYU6   T1PI95   A0A026VYB4   A0A3L8D544   A0A182R898   A0A1J1J421   A0A2R7WS04   E0V9U6   B0X5I5   A0A1I8P4P4   A0A1Y1KXX9   J3JU81   T1HCC7   A0A224XLE9  

PDB

3OBZ     E-value=3.44277e-62,     Score=603

KEGG

101735439    no KO assigned | (RefSeq) BmPHYHD1; phytanoyl-CoA dioxygenase domain-containing protein 1

GO

GO:0051213   GO:0016021   GO:0048244  

Length:

288

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00474

Exp number, first 60 AAs:

0

Total prob of N-in:

0.03615

outside

1  -  288

 

 

Pi

20.94102

Theta

16.198221

Tajima's D

-1.469178

CLR

0.023351

CSRT

0.0602969851507425

Interpretation

Uncertain