Gene

KWMTBOMO00530  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA012268

Annotation

D-arabinose_1-dehydrogenase_[Papilio_xuthus]

Location

Bomo_Chr1(-):15435443-15460709      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 3.091

CDS

ATGAGGTATAACGAGCTCGGTACAACCGGTATCAAAGTTTCTCACATTAGTGTTGGAAGTGCCGCTTTCAGCAATATCTATGGGAAATATGACGAGAAAAGAAGCCTGGAGCTCATTAAAGAAAGCTTGAATCTCGGTATCAACTATCTGGAAACCGGACCCTGGTACGGTCAGGGCAGCTCCGAAAAGGTCATTGGGAAGGCTTTAGTTGGAGTTCCCCGTGATTCGTATTACATCGGGAGTAAAGTCGGCCGCTACGACAAGGACACTCTAAAGATGTTTGACTTTTCTGCAGAGAAAACAGCAGCTGGTCTTGACAATACTCTTTCACTACTCGGCTTAGACTATGTCGATCTGATCCAGGTACATGATATAACTTTTGCTCCGGACACTTCGGTTGTACTCAAAGAGACGTTGCCAGTGTTGGAGCAAGCCGTGAGAGATGGAAAAGCTCGCTTCATTGGGATCGCTGACTATGATATCGACTTGATGAAGGAAGTAGTAGAGGAGTCGGAAGTCAAGATATCAACCATACTCTCTTATTCGAAGTCCACGCTCTTCGATAATCGCTTACAGAACTATATTAGCTTCTTCAAGAGTAAGGGCGTTGGGGTTATTAATGCAGCTGCAACTGGAATGGGTCTGCTGACGAACAAAGGTCCCCAGCCATGGCATCCAGCCAGTGATGATATCAAGGCTATATGCAGACGGGCTTCTGATTACTGCAAGGAACGTAAGGTGGAACTGGCTCGCTTGGCGACCTGGTTTACATTGAACCAGCCTGGAATAGACACAAACATTTGTGGTTTCTTCAACCTGGATCAACTGTACGACACTGTCGAGGTTATGGATACAGGACTCTCTGAGCACGAGTCTAGGATCCTGAGTCAAGTGCAAGCGAGGTTCTTCGACAAAGATACATTACATTGGGACAACGTCGAGCTGCCGTTGTATAAAAACAAACTTAATGAATTATCAAAGAAATGA

Protein

MRYNELGTTGIKVSHISVGSAAFSNIYGKYDEKRSLELIKESLNLGINYLETGPWYGQGSSEKVIGKALVGVPRDSYYIGSKVGRYDKDTLKMFDFSAEKTAAGLDNTLSLLGLDYVDLIQVHDITFAPDTSVVLKETLPVLEQAVRDGKARFIGIADYDIDLMKEVVEESEVKISTILSYSKSTLFDNRLQNYISFFKSKGVGVINAAATGMGLLTNKGPQPWHPASDDIKAICRRASDYCKERKVELARLATWFTLNQPGIDTNICGFFNLDQLYDTVEVMDTGLSEHESRILSQVQARFFDKDTLHWDNVELPLYKNKLNELSKK

Similarity

Belongs to the spermidine/spermine synthase family.

Uniprot

H9JRV8   A0A194PL87   A0A194QVJ6   A0A2H1V9V9   A0A212EKJ6   A0A2A4J7C0   + More
A0A067RUJ9   A0A2J7R6U6   A0A2J7R6T6   A0A088AGZ3   A0A151X4N7   B3P1I2   A0A182K3H3   A0A195BBI2   A0A158NA67   F4WJV5   A0A195FUL3   A0A195DCS5   B4PN13   A0A0N0BFX0   A0A310SWK8   A0A0L7QQ93   K7IML7   A0A2A3E841   W8C3W5   A0A1W4UAI5   A0A232FHT3   A0A182TFY4   E2AF32   E9I9F6   A0A182V9V2   A0A2C9GRD2   A0A026VSW8   A0A154NYI4   A0A195C6A8   A0A3L8DDQ6   A0A034VYK6   A0A0A1XTH3   A0A182YAZ5   Q9VGF3   A0A0C9QQ51   V4B8S9   N6U0U0   A0A2C9K0G7   A0A1Y1LJ45   A0A0K8U6U1   B4QTI7   A0A182WDL9   A0A182STQ9   W8BPY3   B4K5M3   R4UKL8   A0A1B6LJ49   B3MTW6   A0A1I8Q448   A0A1B6G2N6   B4LWS4   Q7QHC3   C3YBR4   A0A1A9Z9V2   A0A182F859   A0A182J1D9   B4HHI9   A0A1B0FCJ6   Q295T6   A0A1B0BW93   D3TQL0   A0A1I8MVP2   A0A1A9VL22   A0A1A9W454   A0A0C9QYR5   A0A1B6I0K4   T1PDF7   A0A0C9QK68   A0A0K8U1L5   A0A3B0JVQ9   A0A1B6FMV4   A0A1Q3FT10   W5JAK6   A0A182M815   B0WG16   A0A1S3IM00   A0A0L0BZV6   A0A182QCD3   A0A1S3IMI2   A0A0K8TKX0   B4LWH0   D6WLK8   A0A182X5Q5   A0A1I8Q432   A0A1I8Q425   B4K5M2   B4JT72   A0A182N282   B4NA56   A0A182PJL9   A0A084VC47   A0A1W2WKL2   E0VXS8   A0A0B6ZKG5  

Pubmed

19121390    26354079    22118469    24845553    17994087    21347285    + More
21719571    17550304    20075255    24495485    28648823    20798317    21282665    24508170    30249741    25348373    25830018    25244985    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    23254933    23537049    15562597    28004739    12364791    18563158    15632085    20353571    25315136    20920257    23761445    26108605    26369729    18057021    18362917    19820115    24438588    20566863   

EMBL

BABH01017048    KQ459605    KPI91870.1    KQ461108    KPJ08990.1    ODYU01001436    + More
SOQ37619.1    AGBW02014274    OWR41985.1    NWSH01002712    PCG67636.1    KK852409    KDR24485.1    NEVH01006750    PNF36558.1    PNF36557.1    KQ982544    KYQ55337.1    CH954181    EDV49441.1    KQ976528    KYM81893.1    ADTU01001447    GL888186    EGI65597.1    KQ981264    KYN43982.1    KQ980989    KYN10686.1    CM000160    EDW97025.1    KQ435794    KOX73961.1    KQ759852    OAD62536.1    KQ414787    KOC60797.1    KZ288330    PBC27917.1    GAMC01002607    JAC03949.1    NNAY01000192    OXU30123.1    GL438984    EFN67987.1    GL761800    EFZ22790.1    APCN01001475    KK108171    EZA46827.1    KQ434775    KZC04078.1    KQ978220    KYM96382.1    QOIP01000009    RLU18302.1    GAKP01010556    JAC48396.1    GBXI01000244    JAD14048.1    AE014297    BT023035    AAF54729.1    AAY55451.1    GBYB01005804    JAG75571.1    KB200314    ESP02247.1    APGK01044147    KB741020    KB631628    ENN75135.1    ERL84851.1    GEZM01060379    JAV71027.1    GDHF01030043    JAI22271.1    CM000364    EDX13292.1    GAMC01005514    GAMC01005513    JAC01043.1    CH933806    EDW14060.1    KC740850    AGM32674.1    GEBQ01016272    JAT23705.1    CH902623    EDV30247.1    GECZ01013071    JAS56698.1    CH940650    EDW66645.1    AAAB01008816    EAA05276.4    GG666497    EEN62421.1    CH480815    EDW42528.1    CCAG010011486    CM000070    EAL28622.2    JXJN01021671    EZ423712    ADD19988.1    GBYB01005802    JAG75569.1    GECU01027229    GECU01007238    JAS80477.1    JAT00469.1    KA646822    AFP61451.1    GBYB01003954    JAG73721.1    GDHF01031712    GDHF01010247    JAI20602.1    JAI42067.1    OUUW01000008    SPP84492.1    GECZ01018231    JAS51538.1    GFDL01004453    JAV30592.1    ADMH02002026    ETN59890.1    AXCM01000854    DS231922    EDS26657.1    JRES01001097    KNC25585.1    AXCN02001739    GDAI01002624    JAI14979.1    EDW66607.2    KRF82832.1    KQ971343    EFA04125.1    EDW14059.1    CH916373    EDV94962.1    CH964232    EDW80699.1    ATLV01010366    KE524580    KFB35541.1    DS235840    EEB18184.1    HACG01021491    CEK68356.1   

Proteomes

UP000005204    UP000053268    UP000053240    UP000007151    UP000218220    UP000027135    + More
UP000235965    UP000005203    UP000075809    UP000008711    UP000075881    UP000078540    UP000005205    UP000007755    UP000078541    UP000078492    UP000002282    UP000053105    UP000053825    UP000002358    UP000242457    UP000192221    UP000215335    UP000075902    UP000000311    UP000075903    UP000075840    UP000053097    UP000076502    UP000078542    UP000279307    UP000076408    UP000000803    UP000030746    UP000019118    UP000030742    UP000076420    UP000000304    UP000075920    UP000075901    UP000009192    UP000007801    UP000095300    UP000008792    UP000007062    UP000001554    UP000092445    UP000069272    UP000075880    UP000001292    UP000092444    UP000001819    UP000092460    UP000095301    UP000078200    UP000091820    UP000268350    UP000000673    UP000075883    UP000002320    UP000085678    UP000037069    UP000075886    UP000007266    UP000076407    UP000001070    UP000075884    UP000007798    UP000075885    UP000030765    UP000009046   

PRIDE

H9JRV8    Q9VGF3   

Pfam

PF00248   Aldo_ket_red        + More
PF17284   Spermine_synt_N
PF00069   Pkinase
PF08311   Mad3_BUB1_I

Interpro

IPR036812   NADP_OxRdtase_dom_sf        + More
IPR023210   NADP_OxRdtase_dom       
IPR020471   Aldo/keto_reductase       
IPR035246   Spermidine_synt_N       
IPR029063   SAM-dependent_MTases       
IPR037163   Spermidine_synt_N_sf       
IPR001045   Spermi_synthase       
IPR030374   PABS       
IPR030373   PABS_CS       
IPR001507   ZP_dom       
IPR000719   Prot_kinase_dom       
IPR011009   Kinase-like_dom_sf       
IPR008271   Ser/Thr_kinase_AS       
IPR015661   Bub1/Mad3       
IPR013212   Mad3/Bub1_I       
IPR017441   Protein_kinase_ATP_BS       

SUPFAM

SSF51430   SSF51430        + More
SSF53335   SSF53335       
SSF56112   SSF56112       

Gene 3D

3.20.20.100     2.30.140.10    

CDD

cd06660  Aldo_ket_red

ProteinModelPortal

H9JRV8   A0A194PL87   A0A194QVJ6   A0A2H1V9V9   A0A212EKJ6   A0A2A4J7C0   + More
A0A067RUJ9   A0A2J7R6U6   A0A2J7R6T6   A0A088AGZ3   A0A151X4N7   B3P1I2   A0A182K3H3   A0A195BBI2   A0A158NA67   F4WJV5   A0A195FUL3   A0A195DCS5   B4PN13   A0A0N0BFX0   A0A310SWK8   A0A0L7QQ93   K7IML7   A0A2A3E841   W8C3W5   A0A1W4UAI5   A0A232FHT3   A0A182TFY4   E2AF32   E9I9F6   A0A182V9V2   A0A2C9GRD2   A0A026VSW8   A0A154NYI4   A0A195C6A8   A0A3L8DDQ6   A0A034VYK6   A0A0A1XTH3   A0A182YAZ5   Q9VGF3   A0A0C9QQ51   V4B8S9   N6U0U0   A0A2C9K0G7   A0A1Y1LJ45   A0A0K8U6U1   B4QTI7   A0A182WDL9   A0A182STQ9   W8BPY3   B4K5M3   R4UKL8   A0A1B6LJ49   B3MTW6   A0A1I8Q448   A0A1B6G2N6   B4LWS4   Q7QHC3   C3YBR4   A0A1A9Z9V2   A0A182F859   A0A182J1D9   B4HHI9   A0A1B0FCJ6   Q295T6   A0A1B0BW93   D3TQL0   A0A1I8MVP2   A0A1A9VL22   A0A1A9W454   A0A0C9QYR5   A0A1B6I0K4   T1PDF7   A0A0C9QK68   A0A0K8U1L5   A0A3B0JVQ9   A0A1B6FMV4   A0A1Q3FT10   W5JAK6   A0A182M815   B0WG16   A0A1S3IM00   A0A0L0BZV6   A0A182QCD3   A0A1S3IMI2   A0A0K8TKX0   B4LWH0   D6WLK8   A0A182X5Q5   A0A1I8Q432   A0A1I8Q425   B4K5M2   B4JT72   A0A182N282   B4NA56   A0A182PJL9   A0A084VC47   A0A1W2WKL2   E0VXS8   A0A0B6ZKG5  

PDB

1PZ1     E-value=2.0465e-19,     Score=234

KEGG

101746219    no KO assigned | (RefSeq) L-galactose dehydrogenase-like

GO

GO:0016491   GO:0006596   GO:0016740   GO:0005829   GO:0005524   GO:0004672   GO:0007094  

PANTHER

PTHR14030  

Length:

328

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.13389

Exp number, first 60 AAs:

0.0635899999999999

Total prob of N-in:

0.03808

outside

1  -  328

 

 

Pi

23.198638

Theta

23.303381

Tajima's D

-0.760235

CLR

0.007666

CSRT

0.186690665466727

Interpretation

Uncertain